mRNA_H-canaliculatus_F_contig1389.3084.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1389.3084.1
Unique NamemRNA_H-canaliculatus_F_contig1389.3084.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1389.3084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1389contigH-canaliculatus_F_contig1389:623..998 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size353
Cds size252
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1389.3084.1prot_H-canaliculatus_F_contig1389.3084.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1389 651..925 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929132.2998495-UTR-H-canaliculatus_F_contig1389:622..6501622929132.2998495-UTR-H-canaliculatus_F_contig1389:622..650Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1389 623..650 -
1696845689.574352-UTR-H-canaliculatus_F_contig1389:622..6501696845689.574352-UTR-H-canaliculatus_F_contig1389:622..650Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1389 623..650 -
1622929132.357442-UTR-H-canaliculatus_F_contig1389:925..9981622929132.357442-UTR-H-canaliculatus_F_contig1389:925..998Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1389 926..998 -
1696845689.6072655-UTR-H-canaliculatus_F_contig1389:925..9981696845689.6072655-UTR-H-canaliculatus_F_contig1389:925..998Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1389 926..998 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929132.3254676-CDS-H-canaliculatus_F_contig1389:650..8391622929132.3254676-CDS-H-canaliculatus_F_contig1389:650..839Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1389 651..839 -
1696845689.5841153-CDS-H-canaliculatus_F_contig1389:650..8391696845689.5841153-CDS-H-canaliculatus_F_contig1389:650..839Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1389 651..839 -
1622929132.3415463-CDS-H-canaliculatus_F_contig1389:862..9251622929132.3415463-CDS-H-canaliculatus_F_contig1389:862..925Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1389 863..925 -
1696845689.5976622-CDS-H-canaliculatus_F_contig1389:862..9251696845689.5976622-CDS-H-canaliculatus_F_contig1389:862..925Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1389 863..925 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1389.3084.1

>prot_H-canaliculatus_F_contig1389.3084.1 ID=prot_H-canaliculatus_F_contig1389.3084.1|Name=mRNA_H-canaliculatus_F_contig1389.3084.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=84bp
MMIQVVKTTKKQRNGYRVRVDKRRRASFALTQRNNETIEQALEERQERQE
AVCLSQHFRSCGVRHMFLEMAHLDLVQPEAMAV*
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mRNA from alignment at H-canaliculatus_F_contig1389:623..998-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1389.3084.1 ID=mRNA_H-canaliculatus_F_contig1389.3084.1|Name=mRNA_H-canaliculatus_F_contig1389.3084.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=376bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1389:623..998- (Hapterophycus canaliculatus Oshoro5f female)
GTCGCGTACCCTACCACAAGGCGAGCTTTTCAAGTAGTGCTGTCGCTCCG
GCCTACATCCTTGAAGACTTGGGATGATGATACAGGTCGTAAAAACGACA
AAGAAACAAAGAAACGGGTACAGAGTACGAGTAGACGTACTGCTGTTTCA
CCGCGCCAGAAAAGGCGTAGAGCGAGCTTTGCTTTGACACAGCGAAACAA
TGAAACAATAGAACAAGCACTTGAGGAACGACAGGAACGACAGGAAGCTG
TCTGCTTAAGCCAGCACTTCCGCTCCTGCGGAGTGCGCCACATGTTTCTT
GAGATGGCGCACCTCGATTTGGTTCAGCCAGAAGCGATGGCGGTCTGACG
ACTTCCGCTGGTGCAGTCATTCAGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1389:623..998-

>mRNA_H-canaliculatus_F_contig1389.3084.1 ID=mRNA_H-canaliculatus_F_contig1389.3084.1|Name=mRNA_H-canaliculatus_F_contig1389.3084.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=504bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1389:623..998- (Hapterophycus canaliculatus Oshoro5f female)
ATGATGATACAGGTCGTAAAAACGACAAAGAAACAAAGAAACGGGTACAG
AGTACGAGTAGACATGATGATACAGGTCGTAAAAACGACAAAGAAACAAA
GAAACGGGTACAGAGTACGAGTAGACAAAAGGCGTAGAGCGAGCTTTGCT
TTGACACAGCGAAACAATGAAACAATAGAACAAGCACTTGAGGAACGACA
GGAACGACAGGAAGCTGTCTGCTTAAGCCAGCACTTCCGCTCCTGCGGAG
TGCGCCACATGTTTCTTGAGATGGCGCACCTCGATTTGGTTCAGCCAGAA
GCGATGGCGGTCTGAAAAAGGCGTAGAGCGAGCTTTGCTTTGACACAGCG
AAACAATGAAACAATAGAACAAGCACTTGAGGAACGACAGGAACGACAGG
AAGCTGTCTGCTTAAGCCAGCACTTCCGCTCCTGCGGAGTGCGCCACATG
TTTCTTGAGATGGCGCACCTCGATTTGGTTCAGCCAGAAGCGATGGCGGT
CTGA
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