mRNA_H-canaliculatus_F_contig1388.3079.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1388.3079.1
Unique NamemRNA_H-canaliculatus_F_contig1388.3079.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1388.3079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1388contigH-canaliculatus_F_contig1388:4492..5290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size799
Cds size441
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929131.7327344-UTR-H-canaliculatus_F_contig1388:4491..48491622929131.7327344-UTR-H-canaliculatus_F_contig1388:4491..4849Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1388 4492..4849 +
1696845689.3426921-UTR-H-canaliculatus_F_contig1388:4491..48491696845689.3426921-UTR-H-canaliculatus_F_contig1388:4491..4849Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1388 4492..4849 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929131.7448628-CDS-H-canaliculatus_F_contig1388:4849..52901622929131.7448628-CDS-H-canaliculatus_F_contig1388:4849..5290Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1388 4850..5290 +
1696845689.3530846-CDS-H-canaliculatus_F_contig1388:4849..52901696845689.3530846-CDS-H-canaliculatus_F_contig1388:4849..5290Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1388 4850..5290 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1388.3079.1prot_H-canaliculatus_F_contig1388.3079.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1388 4850..5290 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1388.3079.1

>prot_H-canaliculatus_F_contig1388.3079.1 ID=prot_H-canaliculatus_F_contig1388.3079.1|Name=mRNA_H-canaliculatus_F_contig1388.3079.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=147bp
MMPQVRHMLVQKFLQVRYYRAQLGREESLLKRHNARKASEESEARLGASY
SEICLLRKIAFFIQIGDKGTFLVKCSKRKSRERVRTRFFSPPRCTISSSS
STLNGTPNSTPGRRETSPTRPQSTSSDVETTIPEEEEEKGSTPYNSG
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mRNA from alignment at H-canaliculatus_F_contig1388:4492..5290+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1388.3079.1 ID=mRNA_H-canaliculatus_F_contig1388.3079.1|Name=mRNA_H-canaliculatus_F_contig1388.3079.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=799bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1388:4492..5290+ (Hapterophycus canaliculatus Oshoro5f female)
ACAAGACTGTTGTGGTGCCGTCAAACCTCTCTACTCTCTAGGTATTCGCT
CTGTTGCTGTCGTTCGCTACTGTTCGCGGAGAGCGGAAGGTTTGAGCCCT
CAGTTTTCTGTTACACCTGCTTGTGCGCTTGTTTCAATGTCGGATTTTCA
AAGCTCTCACTCTTCTTTTTATTTTCATTTATGTCGAAGACACCCGTAGA
AAGGTGCGGCCTCCTTAACCCCCCTTTTGGGACTTTTCTTGATTGCCAAT
CAAGAAGAAGTCTACCAGGGGTAACCGGAACCCCACCGGCTGGCGGCGAG
TACCTTTTCCACTGCTTGTGTTGTACAGTCTCCTGCAGATTTCTCACGTG
TTTTTATAATGATGCCCCAAGTCCGTCACATGCTCGTACAGAAGTTTTTG
CAAGTTCGATACTACCGTGCACAGCTTGGCCGCGAAGAATCACTTCTGAA
GAGACATAATGCTCGTAAGGCTTCGGAAGAATCAGAAGCTAGGTTGGGCG
CGAGTTATAGTGAGATCTGCTTGCTCCGTAAAATTGCCTTTTTCATACAG
ATTGGTGACAAAGGGACCTTTCTTGTAAAATGCTCGAAGAGGAAGAGCCG
AGAGCGGGTTCGAACTCGGTTTTTTTCCCCACCACGGTGTACAATCTCGT
CGTCGTCGTCGACGCTAAATGGTACTCCAAATAGTACTCCGGGGAGGAGG
GAGACATCTCCTACTCGCCCTCAGAGTACTTCCTCCGATGTAGAGACTAC
CATCCCCGAGGAAGAGGAAGAAAAGGGATCCACTCCGTATAACTCTGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1388:4492..5290+

>mRNA_H-canaliculatus_F_contig1388.3079.1 ID=mRNA_H-canaliculatus_F_contig1388.3079.1|Name=mRNA_H-canaliculatus_F_contig1388.3079.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=882bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1388:4492..5290+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATGCCCCAAGTCCGTCACATGCTCGTACAGAAGTTTTTGCAAGTTCG
ATACTACCGTGCACAGCTTGGCCGCGAAGAATCACTTCTGAAGAGACATA
ATGCTCGTAAGGCTTCGGAAGAATCAGAAGCTAGGTTGGGCGCGAGTTAT
AGTGAGATCTGCTTGCTCCGTAAAATTGCCTTTTTCATACAGATTGGTGA
CAAAGGGACCTTTCTTGTAAAATGCTCGAAGAGGAAGAGCCGAGAGCGGG
TTCGAACTCGGTTTTTTTCCCCACCACGGTGTACAATCTCGTCGTCGTCG
TCGACGCTAAATGGTACTCCAAATAGTACTCCGGGGAGGAGGGAGACATC
TCCTACTCGCCCTCAGAGTACTTCCTCCGATGTAGAGACTACCATCCCCG
AGGAAGAGGAAGAAAAGGGATCCACTCCGTATAACTCTGGCATGATGCCC
CAAGTCCGTCACATGCTCGTACAGAAGTTTTTGCAAGTTCGATACTACCG
TGCACAGCTTGGCCGCGAAGAATCACTTCTGAAGAGACATAATGCTCGTA
AGGCTTCGGAAGAATCAGAAGCTAGGTTGGGCGCGAGTTATAGTGAGATC
TGCTTGCTCCGTAAAATTGCCTTTTTCATACAGATTGGTGACAAAGGGAC
CTTTCTTGTAAAATGCTCGAAGAGGAAGAGCCGAGAGCGGGTTCGAACTC
GGTTTTTTTCCCCACCACGGTGTACAATCTCGTCGTCGTCGTCGACGCTA
AATGGTACTCCAAATAGTACTCCGGGGAGGAGGGAGACATCTCCTACTCG
CCCTCAGAGTACTTCCTCCGATGTAGAGACTACCATCCCCGAGGAAGAGG
AAGAAAAGGGATCCACTCCGTATAACTCTGGC
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