mRNA_H-canaliculatus_F_contig13877.3075.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13877.3075.1
Unique NamemRNA_H-canaliculatus_F_contig13877.3075.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13877.3075.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13877contigH-canaliculatus_F_contig13877:224..927 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size704
Cds size573
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13877.3075.1prot_H-canaliculatus_F_contig13877.3075.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13877 244..816 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929131.5280106-UTR-H-canaliculatus_F_contig13877:223..2431622929131.5280106-UTR-H-canaliculatus_F_contig13877:223..243Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13877 224..243 +
1696845689.2767186-UTR-H-canaliculatus_F_contig13877:223..2431696845689.2767186-UTR-H-canaliculatus_F_contig13877:223..243Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13877 224..243 +
1622929131.5544267-UTR-H-canaliculatus_F_contig13877:816..9271622929131.5544267-UTR-H-canaliculatus_F_contig13877:816..927Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13877 817..927 +
1696845689.2939906-UTR-H-canaliculatus_F_contig13877:816..9271696845689.2939906-UTR-H-canaliculatus_F_contig13877:816..927Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13877 817..927 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929131.5389123-CDS-H-canaliculatus_F_contig13877:243..8161622929131.5389123-CDS-H-canaliculatus_F_contig13877:243..816Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13877 244..816 +
1696845689.2853804-CDS-H-canaliculatus_F_contig13877:243..8161696845689.2853804-CDS-H-canaliculatus_F_contig13877:243..816Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13877 244..816 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13877.3075.1

>prot_H-canaliculatus_F_contig13877.3075.1 ID=prot_H-canaliculatus_F_contig13877.3075.1|Name=mRNA_H-canaliculatus_F_contig13877.3075.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=191bp
MCIFVSLFAVLYPSAHFVRVTSSATCFPSVFRQTGAEGEQARYEGRPVLM
LTRSAFFVFTCFELFLYSLFRQLILMRGLGHFSANVSWRSCRNERIAALS
PSLFCGERHAQVPLKVPRELSLKTMRTRPFRGVRAPRTPQEAKGRGWDAN
VASGQYAASCTAVCFCSGKEGRLTKGGRWQGNRRTEAGER*
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mRNA from alignment at H-canaliculatus_F_contig13877:224..927+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13877.3075.1 ID=mRNA_H-canaliculatus_F_contig13877.3075.1|Name=mRNA_H-canaliculatus_F_contig13877.3075.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=704bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13877:224..927+ (Hapterophycus canaliculatus Oshoro5f female)
CTTGTGGCGTCTTATCAGGTATGTGTATTTTCGTGTCTTTATTTGCCGTG
TTGTACCCATCGGCTCATTTTGTACGCGTAACCTCCTCAGCAACATGTTT
TCCGTCCGTTTTTCGACAAACGGGGGCTGAAGGGGAGCAGGCTAGGTACG
AGGGCCGACCTGTCTTGATGTTAACGAGATCAGCGTTTTTTGTTTTTACC
TGCTTTGAACTCTTTTTATATTCGCTGTTTCGCCAGCTGATTTTGATGCG
TGGTCTGGGCCACTTTTCGGCGAACGTTTCTTGGCGCTCATGTCGAAACG
AGCGGATCGCTGCCTTGTCCCCGTCTCTTTTTTGCGGAGAGAGGCACGCA
CAGGTGCCGTTGAAGGTACCACGCGAATTGTCGTTGAAAACGATGCGCAC
AAGGCCATTTCGAGGCGTACGAGCACCACGCACGCCGCAAGAAGCGAAAG
GTCGAGGGTGGGATGCGAACGTCGCTTCCGGACAATACGCCGCAAGCTGT
ACAGCTGTGTGCTTTTGTTCCGGAAAGGAAGGACGGTTGACCAAAGGAGG
GCGATGGCAGGGAAACCGCCGGACAGAAGCGGGAGAACGTTAACGTTTGC
GCGGAGTCTGTCTTCTCTCGTTGTGGCGAAGGAACGATACGATGCCTGGT
ATCTTTCTGCGGAGGGGGCAGTGAATCGTAAACGTGACCGAGCTAGAAAC
AGAT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13877:224..927+

>mRNA_H-canaliculatus_F_contig13877.3075.1 ID=mRNA_H-canaliculatus_F_contig13877.3075.1|Name=mRNA_H-canaliculatus_F_contig13877.3075.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1146bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13877:224..927+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTGTATTTTCGTGTCTTTATTTGCCGTGTTGTACCCATCGGCTCATTT
TGTACGCGTAACCTCCTCAGCAACATGTTTTCCGTCCGTTTTTCGACAAA
CGGGGGCTGAAGGGGAGCAGGCTAGGTACGAGGGCCGACCTGTCTTGATG
TTAACGAGATCAGCGTTTTTTGTTTTTACCTGCTTTGAACTCTTTTTATA
TTCGCTGTTTCGCCAGCTGATTTTGATGCGTGGTCTGGGCCACTTTTCGG
CGAACGTTTCTTGGCGCTCATGTCGAAACGAGCGGATCGCTGCCTTGTCC
CCGTCTCTTTTTTGCGGAGAGAGGCACGCACAGGTGCCGTTGAAGGTACC
ACGCGAATTGTCGTTGAAAACGATGCGCACAAGGCCATTTCGAGGCGTAC
GAGCACCACGCACGCCGCAAGAAGCGAAAGGTCGAGGGTGGGATGCGAAC
GTCGCTTCCGGACAATACGCCGCAAGCTGTACAGCTGTGTGCTTTTGTTC
CGGAAAGGAAGGACGGTTGACCAAAGGAGGGCGATGGCAGGGAAACCGCC
GGACAGAAGCGGGAGAACGTTAAATGTGTATTTTCGTGTCTTTATTTGCC
GTGTTGTACCCATCGGCTCATTTTGTACGCGTAACCTCCTCAGCAACATG
TTTTCCGTCCGTTTTTCGACAAACGGGGGCTGAAGGGGAGCAGGCTAGGT
ACGAGGGCCGACCTGTCTTGATGTTAACGAGATCAGCGTTTTTTGTTTTT
ACCTGCTTTGAACTCTTTTTATATTCGCTGTTTCGCCAGCTGATTTTGAT
GCGTGGTCTGGGCCACTTTTCGGCGAACGTTTCTTGGCGCTCATGTCGAA
ACGAGCGGATCGCTGCCTTGTCCCCGTCTCTTTTTTGCGGAGAGAGGCAC
GCACAGGTGCCGTTGAAGGTACCACGCGAATTGTCGTTGAAAACGATGCG
CACAAGGCCATTTCGAGGCGTACGAGCACCACGCACGCCGCAAGAAGCGA
AAGGTCGAGGGTGGGATGCGAACGTCGCTTCCGGACAATACGCCGCAAGC
TGTACAGCTGTGTGCTTTTGTTCCGGAAAGGAAGGACGGTTGACCAAAGG
AGGGCGATGGCAGGGAAACCGCCGGACAGAAGCGGGAGAACGTTAA
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