mRNA_H-canaliculatus_F_contig1387.3069.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1387.3069.1 vs. uniprot
Match: D8LHA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA8_ECTSI) HSP 1 Score: 261 bits (668), Expect = 4.370e-74 Identity = 219/345 (63.48%), Postives = 230/345 (66.67%), Query Frame = 1
Query: 187 APATGGSTGGGEGDSLEDIQTRLQQVDAISAKIDTAMMAAAEDRLPAVGGFALTRDVDCRRRRVPTARLQQHLTDVQRNSRQRGPKKVEPRGREDPLAPTTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LEAKEAESRMWEECVDEGEAFVTAMLASVVRSLAEGPKTETELDQSVRSDMDTGRAAAGLPVADWSESHMVNVRLVVDVLIALGLVKSDYTTSEQSGGWPMDVHPPSESHGG 1215
A A G G +G+SL DIQ+RLQQVD +SAKIDTAMMAA EDRLPAVGG ALTRDVDCRRRRVPTARLQQHLTDVQR+SRQRG +K + R E XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ++AK +R WEECVDEGEAFVTAMLASVVRSLAEGPKTETELDQSVRSDMD GRAAAGLPVA+WSESHMVNVRLVVDVLIALGLVKSDY T EQS GWPMDVHPPSESHGG
Sbjct: 64 AGADGSGAEGQQGESLRDIQSRLQQVDTLSAKIDTAMMAA-EDRLPAVGGMALTRDVDCRRRRVPTARLQQHLTDVQRHSRQRGVRKSDSRPPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKVPENGTVGAAAAGASAGNARGVNPPSGSGSGSSIGTGIASIKSTAAAQAGARRINGTQHHQVKKREDSKGTAMAGAAAGAVQAKAEVARTWEECVDEGEAFVTAMLASVVRSLAEGPKTETELDQSVRSDMDAGRAAAGLPVANWSESHMVNVRLVVDVLIALGLVKSDYNTVEQSAGWPMDVHPPSESHGG 407
BLAST of mRNA_H-canaliculatus_F_contig1387.3069.1 vs. uniprot
Match: A0A6H5KYA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYA3_9PHAE) HSP 1 Score: 215 bits (547), Expect = 4.650e-58 Identity = 230/497 (46.28%), Postives = 240/497 (48.29%), Query Frame = 1
Query: 202 GSTGGGEGDSLEDIQTRLQQVDAISAKIDTAMMAAAEDRLPAVGGFALTRDVDCRRRRVPTARLQQHLTDVQRNSRQRGPKKVEPRGRED-------------------------------------------------------------------------------------------------------------------------------------------PLAPTTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------LEAKEAESRMWEECVDEGEAFVTAMLASVVRSLAEGPKTETELDQSVRSDMDTGRAAAGLPVADWSESHMVNVRLVVDVLIALGLVKSDYTTSEQSGGWPMDVHPPSESHGG 1215
GS G+G+SL DIQ+RLQQVD +SAKIDTAMMAA EDRLPAVGG ALTRDVDCRRRRVPTARLQQHLTDVQR+SRQRG KK +PR ED AP A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ++AK A +R WEECVDEGEAFVTAMLASVVRSLAEGPKTETELDQSVRSDMD GRAAAGLPVA+WSESHMVNVRLVVDVLIALGLVKSDY T EQS GWPMDVHPPSESHGG
Sbjct: 68 GSGAEGQGESLRDIQSRLQQVDTLSAKIDTAMMAA-EDRLPAVGGMALTRDVDCRRRRVPTARLQQHLTDVQRHSRQRGVKKSDPRPPEDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINGTQHFQXXXXXXXXXXXXVLGGVPAAAPAAGAVAVTAVAVPSSVGAANAVAPLNASARHQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCSKRDTPESLRAAAATAAETATAAMIHERVRVGGGDSREGAAAVEGXXXXXXXXXXXXXXXXXXXXVQAKTAVARTWEECVDEGEAFVTAMLASVVRSLAEGPKTETELDQSVRSDMDAGRAAAGLPVANWSESHMVNVRLVVDVLIALGLVKSDYNTVEQSAGWPMDVHPPSESHGG 563 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1387.3069.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1387.3069.1 >prot_H-canaliculatus_F_contig1387.3069.1 ID=prot_H-canaliculatus_F_contig1387.3069.1|Name=mRNA_H-canaliculatus_F_contig1387.3069.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=406bp LRVQLRPKPAAASPPAPAAAAAADKSTATPVPAANGRMKSAPPATAGAAAback to top mRNA from alignment at H-canaliculatus_F_contig1387:707..4726- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1387.3069.1 ID=mRNA_H-canaliculatus_F_contig1387.3069.1|Name=mRNA_H-canaliculatus_F_contig1387.3069.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4020bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1387:707..4726- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1387:707..4726- >mRNA_H-canaliculatus_F_contig1387.3069.1 ID=mRNA_H-canaliculatus_F_contig1387.3069.1|Name=mRNA_H-canaliculatus_F_contig1387.3069.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2436bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1387:707..4726- (Hapterophycus canaliculatus Oshoro5f female)back to top |