mRNA_H-canaliculatus_F_contig1386.3066.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1386.3066.1
Unique NamemRNA_H-canaliculatus_F_contig1386.3066.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1386.3066.1 vs. uniprot
Match: D7FZ58_ECTSI (Immunophilin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ58_ECTSI)

HSP 1 Score: 384 bits (985), Expect = 1.570e-121
Identity = 188/223 (84.30%), Postives = 198/223 (88.79%), Query Frame = 1 
Query:    1 RTGKPVEISFFSVPNLEEVQFGTATNKAFGMEVAKDLGMDEYKPGSTIRTYLVQYSNIYWAKKLADGLGGTCWVATSDGLKKDTSVIKKPGNAKFCSLRKAETLEGIKKGDTVIIVAPGPKAEWASCMQRFKEQKVIFLNAPLSETYDLGGPLEDLEQAYYLKRVSKGYVFRMFPKPWEALLEKPAGGVEVLGKYKDKPLLRNVAKVRTWGNTFERFAKTISR 669
            RTGKPVEI FF VPNLEEVQFGTATNKAFG EVAKDLGM EYKPGSTIRTYLVQYSNIYWAKKLADGLGGTCWVATSDGLKKDTSVIKKPG AKFCSLRK ET   +KKGDTVI+VAPGP AEWASC QRFKEQKVIFLNAPLSETYDLGGPL+DLEQ YYLKRVSKGYVFR+ PKPWEALLEKP GG+E+LGKY +KPLLRNVAKV     + +RF  +  R
Sbjct:   83 RTGKPVEICFFPVPNLEEVQFGTATNKAFGTEVAKDLGMGEYKPGSTIRTYLVQYSNIYWAKKLADGLGGTCWVATSDGLKKDTSVIKKPGKAKFCSLRKPETFAAMKKGDTVIVVAPGPTAEWASCAQRFKEQKVIFLNAPLSETYDLGGPLKDLEQGYYLKRVSKGYVFRVSPKPWEALLEKPGGGLEILGKYNEKPLLRNVAKV-VRSESMKRFGMSNDR 304
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1386.3066.1 vs. uniprot
Match: A0A836CB35_9STRA (Immunophilin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB35_9STRA)

HSP 1 Score: 268 bits (684), Expect = 1.170e-78
Identity = 128/206 (62.14%), Postives = 157/206 (76.21%), Query Frame = 1 
Query:    1 RTGKPVEISFFSVPNLEEVQFGTATNKAFGMEVAKDLGMDEYKPGSTIRTYLVQYSNIYWAKKLADGLGGTCWVATSDGLKKDTSVIKKPGNAKFCSLRKAETLEGIKKGDTVIIVAPGPKAEWASCMQRFKEQKVIFLNAPLSETYDLGGPLEDLEQAYYLKRVSKGYVFRMFPKPWEALLEKPAGGVEVLGKYKD-KPLLRNVA 615
            + G+PVE+ F  VPNL+EV FGT  N+AFG  VA+DLGM EYKPGS I+TYLVQ+SN+YWAK+LA+GLGG  W   +DGLKKD   + KPG  KF S+ K E+   +KKGDTVI+V PG   +W +C +RF EQK+IFLNAP+S TYDLGGPL+ +EQAYYLKRVSKG+ FR +P PW A LEKP   VEVL +YKD KP LR ++
Sbjct:   39 KVGRPVEVLFPCVPNLDEVAFGTPLNQAFGKSVARDLGMPEYKPGSKIKTYLVQFSNVYWAKRLAEGLGGNVWALCTDGLKKDD--VTKPGRMKFASINKPESYADVKKGDTVIVVQPGVAEQWRACEKRFTEQKLIFLNAPISTTYDLGGPLQSMEQAYYLKRVSKGWAFRAYPAPWTAYLEKPDSSVEVLCEYKDGKPSLRELS 242
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1386.3066.1 vs. uniprot
Match: A0A7S2XYT2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYT2_9STRA)

HSP 1 Score: 224 bits (570), Expect = 5.350e-62
Identity = 112/220 (50.91%), Postives = 148/220 (67.27%), Query Frame = 1 
Query:   10 KPVEISFFSVPNLEEVQFGTATNKAFGMEVAKDLGMDEYKPGSTIRTYLVQYSNIYWAKKLADGLGGTCWVATSDGLKKDTSVIKKPGNAKFCSLRKAETLEGIKKGDTVIIVAPGPKAEWASCMQRFKEQKVIFLNAPLSETYDLGGPLEDLEQAYYLKRVSKGYVFRMFPKPWEALLEKPAGGVEVLGKYKDKPLLRNVAKVRTWGNTFERFAKTISR 669
            + +EI F  VPNL+E+ FGT  N+ FG E+A DLG+ EYKPGS  R YL+Q+S IYWAK+LA  L G  +VAT DGLKKD  VI KPG  K  +    + LE ++KGDTVI+V PG  + W    + F++QKV++LN+ ++ETYDLGGPL+DLEQ+ Y KR+SKGYV R+FP  WE  L+KP    E L  + +KP LR  +K+ T   + ER+     R
Sbjct:   97 RQIEIFFNPVPNLDEIDFGTPLNQEFGKEMAVDLGLPEYKPGSLARRYLLQFSQIYWAKQLAQALPGNIYVATLDGLKKD--VITKPGKMKLANFVNGKGLENVQKGDTVIVVNPGGNSVWNKADKMFQDQKVVYLNSLVTETYDLGGPLKDLEQSLYFKRISKGYVLRVFPNKWEVYLDKPDFTTEKLAVFDEKPKLREASKL-TMQESMERYGVNNDR 313
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1386.3066.1 vs. uniprot
Match: A0A6V1RIV3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RIV3_HETAK)

HSP 1 Score: 213 bits (543), Expect = 4.910e-58
Identity = 109/233 (46.78%), Postives = 154/233 (66.09%), Query Frame = 1 
Query:   16 VEISFFSVPNLEEVQFGTATNKAFGMEVAKDLGMDEYKPGSTIRTYLVQYSNIYWAKKLADGLGGTCWVATSDGLKKDTSVIKKPGNAKFCSLR---KAETLEG----IKKGDTVIIVAPGPKAEWASCMQRFKEQKVIFLNAPLSETYDLGGPLEDLEQAYYLKRVSKGYVFRMFPKPWEALLEKPAGGVEVLGKYKDKPLLRNVAK------VRTWGNTFERFAKTISRSL 675
            VE+ F  VPNL+EV+FGT TN+ FG+E+A+DLG+ EYKPGS  + YL++++ +YWAK+LA  L G  +V ++D LKKD   I KPG +++   R   K +  EG    +K GDTV+IV PGP A W   +++F EQK++FLN+ + E Y++G PL  +E AYYLKRVSKGYV R +P PW++ LE P G  EV+  Y ++P LR V++      +  +G   +RFAK     L
Sbjct:  113 VEVYFDPVPNLDEVKFGTPTNQRFGIEIARDLGLPEYKPGSLAKRYLLEFAQLYWAKRLAGALPGAVFVLSTDNLKKDP--ITKPGKSRYIYFRSGPKKKKAEGEEELVKPGDTVVIVNPGPTAVWKKALEQFPEQKLVFLNSLVYENYNIGAPLPGVETAYYLKRVSKGYVGRRYPSPWKSYLEGPEGQSEVMSSYDERPQLREVSEELRKTSLERYGIFNDRFAKGFGARL 343
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1386.3066.1 vs. uniprot
Match: B7GAR8_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GAR8_PHATC)

HSP 1 Score: 152 bits (383), Expect = 3.620e-37
Identity = 96/236 (40.68%), Postives = 136/236 (57.63%), Query Frame = 1 
Query:   10 KPVEISFFSVPNLEEVQFGTATNKAFGMEV-AKDLGMDE-YKPGSTIRTYLVQYSNIYWAKKLADGLGGTCW------VATSDGLKKDTSVIKKPGNAKFCSLRKAETLEGIKKGDTVIIVAPGPKAEWASCMQRFKEQKVIF--LNAPLSETYDLGGPLEDLEQAYYLKRVSKGYVFRMFPKPWEALLEKPAGGVEVLGKYKDKPLLRNVAK-VRTWGNTFERFAKTISRSLSPR 684
            K +E++F  VPN+EE +FGT  N+ FG +V A+++G    YKPGS +   L+ YSN+YWAKK+A  +GG         V T++ +  +  +I+  G  +  SL    + E   + + VI+V PG + +W           + F  LN   S TYDLG      E+AY+LKR+SKG+VFR FP PW+A LEKP G VE+L  YK KP L+ VA  VR    +F+R+A    R +S R
Sbjct:   62 KQIEVNFPPVPNVEEAKFGTPLNQLFGTKVVAREIGFTGGYKPGSDVSRQLIAYSNMYWAKKIAPAIGGGIMGGSKVTVLTAEAV--NLKLIQNSGVGRTASLSPRASQEF--QNEAVIVVNPGGEEQWERIRAVHASDDIPFVILNNAYSTTYDLGNK-RGYEEAYFLKRISKGWVFRAFPGPWQAYLEKPDGNVELLASYKIKPSLKEVATAVRE--ESFKRYAMGNDRWMSGR 290
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1386.3066.1 vs. uniprot
Match: A0A6U6DJL4_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6DJL4_9STRA)

HSP 1 Score: 150 bits (379), Expect = 1.410e-36
Identity = 96/228 (42.11%), Postives = 132/228 (57.89%), Query Frame = 1 
Query:   16 VEISFFSVPNLEEVQFGTATNKAFGMEVA-KDLGMDE-YKPGSTIRTYLVQYSNIYWAKKLADGLGGTCW----VATSDGLKKDTSVIKKPGN-AKFCSLRKAETLEGIKKGDTVIIVAPGPKAEWASCMQRFKE--QKVIFLNAPLSETYDLGGPLEDLEQAYYLKRVSKGYVFRMFPKPWEALLEKPAGGVEVLGKYKDKPLLRNVA-KVRTWGNTFERFAKTISR 669
            +E+ F  VPN+EEV+FGT  N+ FG +V  +DL +   YKPGS +  YL+ Y+N+YWAKKLA  + G       V      + + S IK  G+  +   L   ++ +  + G+ VI V PG +  W   +         V+ LN   S +YDLG      E+AYYLKR+SKG+VFR FP PWEA LEKP G  E+L  YK KPLLR+VA +VR    +F+R+A +  R
Sbjct:   63 IEVQFPPVPNVEEVKFGTPLNQKFGKQVLQRDLNVSGGYKPGSDLSRYLIAYANVYWAKKLAGAVKGGALGGKPVCVLSAEQVNFSDIKSMGDLTRSGKLMTDKSRKEGRNGEAVICVNPGGEETWDRVVSAHGSPGSPVVMLNNAYSTSYDLGNK-RGFEEAYYLKRISKGWVFRSFPGPWEAYLEKPDGTCELLKSYKTKPLLRDVANEVRE--ESFKRYAISNDR 287
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1386.3066.1 vs. uniprot
Match: A0A7S2PN09_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PN09_9STRA)

HSP 1 Score: 149 bits (375), Expect = 5.570e-36
Identity = 88/230 (38.26%), Postives = 131/230 (56.96%), Query Frame = 1 
Query:   16 VEISFFSVPNLEEVQFGTATNKAFGMEVAKDLGMDEYKPGSTIRTYLVQYSNIYWAKKLADGLGGTCWVATSDGL----KKDTSVIKKPGN-AKFCSLRKAETLEGIKKGDTVIIVAPGPKAEWASCMQRFKEQKVIF--LNAPLSETYDLGGPLEDLEQAYYLKRVSKGYVFRMFPKPWEALLEKPAGGVEVLGKYKDKPLLRNVAKVRTWGNTFERFAKTISRSLSPR 684
            +++ F  VPN+EEV+FGT  N+ FG ++A DL M +Y PGS +   L+ YSN+YWAK+ A  L G        G+    + D + +K  G+ ++   +   +  +  + G+ +I + PG +  W   +    +    F  +N   S +YDLG   +  E+AYYLKR+SKG+VFR FP PWEA LEKP G VE+L  YK KP LR  A++     +F+R+A    R +S R
Sbjct:   75 IQVEFPPVPNVEEVKFGTPLNQKFGKKIAPDLKM-KYLPGSNLSRNLIAYSNVYWAKRFAGALKGGALGGKPVGVLSAEQVDFTDVKNMGDLSRSGKINTDKARKEGRNGEAIICINPGGEETWPRLVSAHGQPNCPFVVMNNSYSTSYDLGNK-KGFEEAYYLKRISKGFVFRSFPGPWEAYLEKPDGTVELLESYKTKPKLREAAEL-VRETSFKRYAMDNDRWMSGR 301
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1386.3066.1 vs. uniprot
Match: A0A7S3Q0R4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q0R4_9STRA)

HSP 1 Score: 148 bits (373), Expect = 7.560e-36
Identity = 95/228 (41.67%), Postives = 129/228 (56.58%), Query Frame = 1 
Query:   10 KPVEISFFSVPNLEEVQFGTATNKAFGMEV-AKDLGM-DEYKPGSTIRTYLVQYSNIYWAKKLADGLGG---TCWVATSD-----GLKKDTSVIKKPGNAKFCSLRKAETLEGIKKGDTVIIVAPGPKAEWASCMQRFK--EQKVIFLNAPLSETYDLGGPLEDLEQAYYLKRVSKGYVFRMFPKPWEALLEKPAGGVEVLGKYKDKPLLRNV-AKVRTWGNTFERFA 654
            K +E++F SVPN+EEV+FGT  N+ FG  V AK+L     YKPGS +   L+ YSNIYWAKK+A    G   T  V TS+      +KK    + + G     ++   +  +  +  + VI + PG +  W   +          + LN   S TYDLG      E+AYYLKRVSKG+++R +P PWEA LEKP G VE+L  +K KPLLR V A VR    +F+R+A
Sbjct:   57 KKIEVNFPSVPNVEEVKFGTPLNQKFGTNVVAKNLKFAGGYKPGSDVSRQLIGYSNIYWAKKIASAAKGKNKTVAVITSEPVIFSSIKKGMGDLSRSG-----TIMSQKARQEARDNECVICINPGGEETWDRVLSAHTTPSSSFVVLNNAYSTTYDLGNK-RGYEEAYYLKRVSKGWIYRAYPGPWEAYLEKPDGNVELLQSFKTKPLLREVSALVRD--ESFKRYA 276
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1386.3066.1 vs. uniprot
Match: A0A7S1Z767_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z767_TRICV)

HSP 1 Score: 147 bits (372), Expect = 1.110e-35
Identity = 100/240 (41.67%), Postives = 134/240 (55.83%), Query Frame = 1 
Query:   10 KPVEISFFSVPNLEEVQFGTATNKAFGMEV-AKDLGM-DEYKPGSTIRTYLVQYSNIYWAKKLADG-----LGG--TCWVAT---SDGLKKDTSVIKKPGNAKFCSLRKAETLEGIKKGDTVIIVAPGPKAEWASCMQRF--KEQKVIFLNAPLSETYDLGGPLEDLEQAYYLKRVSKGYVFRMFPKPWEALLEKPAGGVEVLGKYKDKPLLRNVA-KVRTWGNTFERFAKTISRSLSPR 684
            K +E++F  VPN+EEV+FGT  N+ FG  + AKDL +   YKPGS +   L+ Y+NIYWAKK+A       LGG   C + T   S    K    I + G       RK    EG + G+ V+   PG +  W   +      E  ++ LN   S TYDLG   +  E+AYYLKR+SKG+V+R FP PWEA LEKP G VE+L  Y+ KP LR V+ +VR    +F+R+A    R +  R
Sbjct:   61 KKIEVNFPPVPNVEEVKFGTPLNQKFGKNILAKDLKVVGGYKPGSDLSRNLIAYANIYWAKKIASAAKGGSLGGKPVCALTTEPVSFSQIKSMGDISRSGKLMSEKARK----EG-RSGEVVVCANPGGEEAWDRFVSAHGSPEGTIVMLNNAYSTTYDLGNK-KGYEEAYYLKRISKGWVYRAFPGPWEAYLEKPDGNVELLKSYRSKPSLREVSNEVRE--ESFKRYAINNDRWMGGR 292
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1386.3066.1 vs. uniprot
Match: A0A7S2MI61_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MI61_9STRA)

HSP 1 Score: 147 bits (372), Expect = 1.430e-35
Identity = 93/226 (41.15%), Postives = 128/226 (56.64%), Query Frame = 1 
Query:   10 KPVEISFFSVPNLEEVQFGTATNKAFGMEVAKDLGM-DEYKPGSTIRTYLVQYSNIYWAKKLADGLGGTCW------VATSDGLKKDTSVIKKPGNAKFC--SLRKAETLEGIKKGDTVIIVAPGPKAEWASCMQRFKE--QKVIFLNAPLSETYDLGGPLEDLEQAYYLKRVSKGYVFRMFPKPWEALLEKPAGGVEVLGKYKDKPLLRNVAKVRTWGNTFERFA 654
            K +E++F  VPNL+EV+FGT  N+ FG  +A +L     YKPGS +   LV Y+NIYWAKK+A    G         V TS+ +  D  +IK  G+   C  ++      EG + G+ V+ V PG +  W   +          + LN   S +YDLG      E+AYYLKR+SKG+VFR FP PW+A LE+P G VE+L  YK KP LR+VA +     +F+R+A
Sbjct:   69 KNIEVNFPPVPNLDEVKFGTPLNQKFGKSIASNLKFAGGYKPGSDVSRNLVGYANIYWAKKIAGAAKGGAVGGKPVAVLTSEPV--DFGLIKGLGDLSRCGKTMTPKARQEG-RNGEAVLCVNPGGEETWDRVVSAHGSPGSPFVVLNNAYSTSYDLGNK-RGFEEAYYLKRISKGWVFRSFPGPWQAYLERPDGTVELLKSYKSKPALRDVATI-VREESFKRYA 289
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1386.3066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZ58_ECTSI1.570e-12184.30Immunophilin n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A836CB35_9STRA1.170e-7862.14Immunophilin n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A7S2XYT2_9STRA5.350e-6250.91Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V1RIV3_HETAK4.910e-5846.78Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
B7GAR8_PHATC3.620e-3740.68Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A6U6DJL4_9STRA1.410e-3642.11Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S2PN09_9STRA5.570e-3638.26Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S3Q0R4_9STRA7.560e-3641.67Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S1Z767_TRICV1.110e-3541.67Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2MI61_9STRA1.430e-3541.15Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1386contigH-canaliculatus_F_contig1386:16725..22011 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score328.9
Seed ortholog evalue1.6e-87
Seed eggNOG ortholog2880.D7FZ58
EggNOG free text desc.Domain of unknown function (DUF1995)
EggNOG OGs2BHAJ@1,2S1BD@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-02_006370.1
Exons5
Model size3143
Cds size615
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929127.942991-UTR-H-canaliculatus_F_contig1386:16724..191621622929127.942991-UTR-H-canaliculatus_F_contig1386:16724..19162Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1386 16725..19162 -
1696845688.8709476-UTR-H-canaliculatus_F_contig1386:16724..191621696845688.8709476-UTR-H-canaliculatus_F_contig1386:16724..19162Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1386 16725..19162 -
1622929128.0313954-UTR-H-canaliculatus_F_contig1386:21921..220111622929128.0313954-UTR-H-canaliculatus_F_contig1386:21921..22011Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1386 21922..22011 -
1696845688.9345913-UTR-H-canaliculatus_F_contig1386:21921..220111696845688.9345913-UTR-H-canaliculatus_F_contig1386:21921..22011Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1386 21922..22011 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929127.9573646-CDS-H-canaliculatus_F_contig1386:19162..193931622929127.9573646-CDS-H-canaliculatus_F_contig1386:19162..19393Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1386 19163..19393 -
1696845688.8869166-CDS-H-canaliculatus_F_contig1386:19162..193931696845688.8869166-CDS-H-canaliculatus_F_contig1386:19162..19393Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1386 19163..19393 -
1622929127.969022-CDS-H-canaliculatus_F_contig1386:19884..199531622929127.969022-CDS-H-canaliculatus_F_contig1386:19884..19953Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1386 19885..19953 -
1696845688.8966544-CDS-H-canaliculatus_F_contig1386:19884..199531696845688.8966544-CDS-H-canaliculatus_F_contig1386:19884..19953Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1386 19885..19953 -
1622929127.9819157-CDS-H-canaliculatus_F_contig1386:20373..204821622929127.9819157-CDS-H-canaliculatus_F_contig1386:20373..20482Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1386 20374..20482 -
1696845688.9054193-CDS-H-canaliculatus_F_contig1386:20373..204821696845688.9054193-CDS-H-canaliculatus_F_contig1386:20373..20482Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1386 20374..20482 -
1622929127.9978068-CDS-H-canaliculatus_F_contig1386:21067..211741622929127.9978068-CDS-H-canaliculatus_F_contig1386:21067..21174Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1386 21068..21174 -
1696845688.9139428-CDS-H-canaliculatus_F_contig1386:21067..211741696845688.9139428-CDS-H-canaliculatus_F_contig1386:21067..21174Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1386 21068..21174 -
1622929128.0150654-CDS-H-canaliculatus_F_contig1386:21822..219211622929128.0150654-CDS-H-canaliculatus_F_contig1386:21822..21921Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1386 21823..21921 -
1696845688.926173-CDS-H-canaliculatus_F_contig1386:21822..219211696845688.926173-CDS-H-canaliculatus_F_contig1386:21822..21921Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1386 21823..21921 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1386.3066.1prot_H-canaliculatus_F_contig1386.3066.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1386 19163..21921 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1386.3066.1

>prot_H-canaliculatus_F_contig1386.3066.1 ID=prot_H-canaliculatus_F_contig1386.3066.1|Name=mRNA_H-canaliculatus_F_contig1386.3066.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=205bp
MEVAKDLGMDEYKPGSTIRTYLVQYSNIYWAKKLADGLGGTCWVATSDGL
KKDTSVIKKPGNAKFCSLRKAETLEGIKKGDTVIIVAPGPKAEWASCMQR
FKEQKVIFLNAPLSETYDLGGPLEDLEQAYYLKRVSKGYVFRMFPKPWEA
LLEKPAGGVEVLGKYKDKPLLRNVAKVRTWGNTFERFAKTISRSLSPRAW
HWPV*
back to top

mRNA from alignment at H-canaliculatus_F_contig1386:16725..22011-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1386.3066.1 ID=mRNA_H-canaliculatus_F_contig1386.3066.1|Name=mRNA_H-canaliculatus_F_contig1386.3066.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=5287bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1386:16725..22011- (Hapterophycus canaliculatus Oshoro5f female)
AGGACTGGCAAACCGGTTGAAATATCTTTTTTCTCAGTTCCGAACTTGGA
GGAGGTTCAATTCGGGACAGCAACTAACAAGGCGTTCGGCATGGAAGTGG
CCAAAGACCTGGGAATGGACGAGTACAAGCCGGGGTCCACAATCAGGACA
TACCTCGTGCAGTACAGCAACATTTACTGGGCGAAAAAGGTGAGAAAAAG
TTGTTGGGCGCGAAACCAAGAGTTCGCTCAGGTATCCCTCTGCCCTCTGA
CCTCCTGCCCTCTGCATCCGGCGCAAGGCGCTCGGGTCGGCGGTGTAAGC
ATATGGTGCGGCACGTGTGCACACACTCATCCTTTTCTGCCTTTCGCGTT
GAATACGACCGTAGCATCCTGACAGGAGAGAAGTCTTCAACGGTTGTTGT
CAACAATATTTTGTCTGAGGCTACCTAGAATTGCGAGACTTTCTCCAGAA
AGCACTCGGGGAACCCATTTTTCTGCGAGAGTGGCACCGCCTCGACAAAA
GGTGATGCTACACGCCACATGACATCATTGTGAAAGTTCATACACATCTG
AGTCCGTGCTATCCTCTTCTGACGTCGATGGCAGCGGTCGAAAGAGATCT
TCCTGTGTTTTGTATTTTTTGAAGCCCCAGAATCCCTTCGAGGTCTCCGT
GGGTCTCCCCTTGTATATCTTCGTGCCGTGAATCGTTTACTTCCTCTTTG
TCGGTGGTGCATGCTTTTTTTAGTGTTGCACTGTAGGTCGAGGTGGTGCA
TGCCTTTTCTGTCTGTTAATCCGTTGTTGTTTTGTGTATGGTGTTGCCTT
ATATGTATGTTTACGTTGTTTCCTCGTTTCATTTCAGCTGGCGGATGGTC
TTGGAGGCACGTGTTGGGTGGCGACGTCTGACGGGCTCAAGAAAGACACG
TCCGTGATCAAGAAGCCAGGGAACGCCAAGTTCTGCAGCCTCAGGTTCTC
GATTTGTTCCACTTTTTTCAGACGGTTAAGACGGACGAGGGCTCCTCATT
ATGTGGAGGGACCCAAGCAAGCCGCTGCCTTTTTGAAGCTCAATACCGAG
CTCTTCCTCTGGTTGGCACTTCTTGAGTTAGTGCTTCACTTGTCGTTTAT
ATTATTTTCGCGGACACGAATCCCGGAAATAAACCACTTTGATCATACCC
GATGGCTGATGCCCTCGTTTTTTCCAAAACCTGACGAAAATGGACGGGTA
TGTTATTCGCCTTGCAGATTTCATTGAGTCATATTAGTGTATTGGAGTTA
AGCCAGGTCGCAAGCAAAAATAGAGTAAGGACAGACCAACAAGTCAATCC
ACCCCTCCGTGCAGTGGCCTTTTCAGCGATAACGATCGGGTTGCCACTGG
CAAATAAGCGCGACCCGTGATCTTATCCCTGCCCCCAGCTTCAGTCTCGC
CCACCTCCTGAACTCCAGATCGCTCGTTTGTCAGCTGGCATTGAATGACT
CTCTCCTCTTTGTACTCGTGGATGCTTAACAAAGCACATCGCTATGCCTC
AATGCGACAATGTTGGTTTCACTACCTAGGAAAGCGGAGACGTTAGAGGG
CATAAAAAAGGGGGACACGGTGATAATTGTGGCGCCTGGTCCGAAGGCAG
AGTGGGCATCATGCATGCAGCGCTTCAAGGAACAAAAGGTACAAATCAGG
GTTCGCCTTGGAGAGCAAGTAGGCGGGAGGAAGCAGACCGGCCTCAAAGG
AACCACGCTGAAAGTTGACGCATCTGTCAACAAAGGTTTGACCATTCGGC
TGTCCAAAAGGCCAGACGGAATCCAGCAGTCCAGGGGGGAGGCCTAGCTC
TGATTCGTATATTTCAATATTGGTCAACGATAATATTGGTCAACGACGGA
AGTGGAGTTGGGAGGTCTGAAGGTCTTAAAACTTGATCAATCAAGCTTTG
TTCCTTTGCTAGGAACGGGGAGGCGATTGTCCAAATGTTTCATTCGTAGT
TTCTATCTCACTCGACAGGTCCATCACGTATTTGTTCCCCTCATGGAGCG
TGCATTTGCACCACAGCCTTATTTGATTTTGCTGCATTCTACCTGCCCTT
CGCGCTAGGTGATCTTCTTGAACGCCCCGCTGAGCGAGACGTATGACTTG
GGAGGGCCACTGGAAGATCTAGAGCAGGTGAGCGGTGTTGTCGTTAGCGT
TAGCGTTTTTCCCCTCACCTTGTCCGCGATGCTCGCTCGACGTGAATGTA
CCAATCGAAGCTTTAACGAACCATCAAGGTTACCCAACAGTCACAGAAGC
CGCACAGGATAGTTTTCCATGTTTCGCACTCCAATGCCTTGTATTCTCTG
TGGTTGGACTTGCCCGACGTTGTGACCCAGTTTCGCAGGTGTGTTTGCCT
TGTTCTTCTCCATGACGGTTATGGCCGACCTCACTCTTCATCAACTCACC
GCATCTCCCCTCGTACCCATATAAAATGATGTCATATCTCGTAATGAACG
AGCGACGAAAGATCGAGTGACAGCGGCCACCCAGAAGTGAAACCTGCCTC
CCGTACTCGTATGAGGCCATCCATGATGCCTTGTCTCAGACGAGGTGTAC
AATCAAATGCGCCTCCACGCCCCGTCCCTCCGCCGTCCGCCTTTCCTACG
CGGCGATTATTTTCGCAGGCCTACTATCTCAAGCGAGTCAGCAAAGGTTA
CGTGTTCCGCATGTTCCCTAAGCCTTGGGAGGCGTTGCTGGAGAAGCCGG
CCGGTGGCGTCGAGGTTCTGGGCAAGTACAAGGACAAGCCGCTACTGAGG
AATGTGGCTAAGGTCCGTACGTGGGGGAACACCTTTGAAAGGTTTGCAAA
AACAATTTCACGTTCGCTGAGTCCAAGAGCCTGGCACTGGCCAGTTTGAT
AGGCTGATTTCAGTCCTTTCCCTTAAAACCGTAGTTTGGTCACTACTCGT
TCCAGCTGATATGGTGCACGACGGTATTTGCTTCATTTTGAGCCAATCCT
TCGCAAGCCTCGCCTAAATTTGGGGCGGCATCTCTACACACAAACTGCGT
ACCTCAACAAACGTATTTCTCCCTGTTCGGTGCGGTTGTACTCATGAGCA
AGTTCGCTGGGCCCGTTTACTTTTCACACTCGACAACAGACGGCTCTCTG
CATGTCTCAACTCGATTTCCCCTGCGTGCAGGTAGTGCGGCAAGAGAGCA
TGAAGCGGTTCGGCATGTCCAATGACCGTTGGACCAACGACAAGCGCCTA
GGCGGGCGGCTTTGAAAGTTCTTCGAACGAGTGAACATTGTCTGCGGGCT
GTTTTTCAAGACAACATCTACCCAACTATTATTATCACTTGCTGAGTCTG
CCCCCGCAACATTGAGAGGATCAACTCATTAGCGGCCCGTTCTTACGAAT
CCAGAGGTCAGGCCCCGCCTGACTTTGTCATGCGAGGCTATAGATCATCG
CCATGTATCGTAAAGGATTTTGTGCTGCACTCGCCACTGAGCCCCACCTT
TCTTGCAAGGGAGGTGGTACTTTGCCCGCGTTTCGGGGGTGGGTAGCACA
TGCCGTGGAGTTTGGGCTTGGGCCAAGTGTTGCTTTCACGGCGTAACGTT
TTCCCGTCGCGTTGCGCTTGCTTCGTCTTGCGTTTGTCGTTCTTGTCGCA
GTTCATGGTACATTACGGGCCACTTCCCCTGCTTTGGTAAGATTTCTGCT
CGGGTATCTGCTTCGATGTTCTTCAGATTTTTGCTCGGGTGATTGCTGTG
ATAAGAGTGGTTTGCAATCTGCTGCACACTAAATTGCGGTAACGTACAAT
TATAGCACTTTTTCGGTGCAGCGGGATAGAAGATGACCCAGACATACCCA
AGTGTGAGCGCCCTTGTAGGACCGCTAAGCCGTCTAAAAAGACGGACGAT
GCAAGCTTTTTGGTCTCTCAAGCATCGAAATATTGTCGCAGGAGAAAAGT
TTCTTCTAGGAGAAGATTCCATCCCCTCTCGTTGTCAAAAGGGTGAAGTG
AAAGGTCAACCTCACTTTACACGAGTGTTGAGAACAAATGGGGATGCCAG
TTCGAGCGACCATGCGGCGCACCAGAACTGACAAGGTCGTCGTCCTTCGC
CTTGTGAGGCAGGCGACTGTACGGTCTTCTGCGAGACCCTCTTCCATTTG
TAGCGGACTTTTCAAGGGAAGAGATGCTCAGCCACAAAGTGCTTGTGTAG
TGTTGCCAGCTTTCATTGCACGTCTTTCAAGCTGAAGTTCACTTGTAGGT
TGATGCTCCAGTGTTTTCGTCTGCTCAGAGAAAGAACATTTGCCGGGTGC
TGATGGCCCTGAGCGGTGTTTTGTTCATACATATTTTCAATTTGCAGGTA
GAGGGTGTGCCATTTTATGCTCGGGGAGTTGTTTTTAAGAGGTGTTGCCC
CGGCCGTAGTCTAATCTCATGGAGTTTACACTGTTTGTGGGGTTCAGGCC
CGGTGCTGTGGACAGAAATTCCGACTTCATAAAGACGGAGCAAGGTCAAC
GTAAACGCCGAGCGAGAGGGTGGAAAGATGGCCGTGAACTATTTCAAACG
GATATGGAAGAAGAGGAAAGAGGATGGGGTAGCGCGAGGATGGAGGAGAC
GGGAGTGAAAATAAGTGTTCGTGTTGAAGCGTAACGGCGCGCTGCAAAAG
AGAACCACTATGATTGCGGGTGTCGAACCGCGGTTTGCTCGTTCAGTATC
CCACAAGTGCGTCGTCTGTCACGCAAAAACCACATTTCCGTTAGATTTTC
TAATCGACACCTTTTTTACATTGCATTGGAGGGGGGCAGGGGGGCTACTC
CGTATCAGATAGAAATCCGATTTTTAGCCACCGAGTAGATGCGGCGTTAT
TGACAAGTATTGAGAGTTTGGGTCTATCGGTAACGCCGTTTGAACTTTGT
CCTGGAAAATACTGTGAGCCTCGGCCTTGTTGTGTCACTTGATTTTGTAA
GATTACAGACGGCGGCGCCGGTTTCACTCCACCACGACAGGAGACAAAAA
TGGCAGACAAATTCTAAGGCGGTAGACAGGCGATGTTCGAGAAGCGCATC
TACTACATATCATTAGGCAATCTGCTCGATGACGACCCTCCCACCTCGTG
TGCGCTGAGGTTACCCGCCAACCAGGCTAGTCTTTATCGCGATTCGACTG
GCGCAATTAGTTTATCAACCGCATGTTCATGAATTCCGCAACCAACTTGT
CTCTGTACATGCAACATGGCGTATATCACGGGTACCCTCACATTTCGCTC
AGGTCGTGAAATCCCTTCCACTGGATAACCGAGCGCCGCCATGATCCCCG
CGGTGCGTTGCGGCACACACCATTATCTTGCCTGCCA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1386:16725..22011-

>mRNA_H-canaliculatus_F_contig1386.3066.1 ID=mRNA_H-canaliculatus_F_contig1386.3066.1|Name=mRNA_H-canaliculatus_F_contig1386.3066.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1230bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1386:16725..22011- (Hapterophycus canaliculatus Oshoro5f female)
ATGGAAGTGGCCAAAGACCTGGGAATGGACGAGTACAAGCCGGGGTCCAC
AATCAGGACATACCTCGTGCAGTACAGCAACATTTACTGGGCGAAAAAGA
TGGAAGTGGCCAAAGACCTGGGAATGGACGAGTACAAGCCGGGGTCCACA
ATCAGGACATACCTCGTGCAGTACAGCAACATTTACTGGGCGAAAAAGCT
GGCGGATGGTCTTGGAGGCACGTGTTGGGTGGCGACGTCTGACGGGCTCA
AGAAAGACACGTCCGTGATCAAGAAGCCAGGGAACGCCAAGTTCTGCAGC
CTCAGCTGGCGGATGGTCTTGGAGGCACGTGTTGGGTGGCGACGTCTGAC
GGGCTCAAGAAAGACACGTCCGTGATCAAGAAGCCAGGGAACGCCAAGTT
CTGCAGCCTCAGGAAAGCGGAGACGTTAGAGGGCATAAAAAAGGGGGACA
CGGTGATAATTGTGGCGCCTGGTCCGAAGGCAGAGTGGGCATCATGCATG
CAGCGCTTCAAGGAACAAAAGGAAAGCGGAGACGTTAGAGGGCATAAAAA
AGGGGGACACGGTGATAATTGTGGCGCCTGGTCCGAAGGCAGAGTGGGCA
TCATGCATGCAGCGCTTCAAGGAACAAAAGGTGATCTTCTTGAACGCCCC
GCTGAGCGAGACGTATGACTTGGGAGGGCCACTGGAAGATCTAGAGCAGG
TGATCTTCTTGAACGCCCCGCTGAGCGAGACGTATGACTTGGGAGGGCCA
CTGGAAGATCTAGAGCAGGCCTACTATCTCAAGCGAGTCAGCAAAGGTTA
CGTGTTCCGCATGTTCCCTAAGCCTTGGGAGGCGTTGCTGGAGAAGCCGG
CCGGTGGCGTCGAGGTTCTGGGCAAGTACAAGGACAAGCCGCTACTGAGG
AATGTGGCTAAGGTCCGTACGTGGGGGAACACCTTTGAAAGGTTTGCAAA
AACAATTTCACGTTCGCTGAGTCCAAGAGCCTGGCACTGGCCAGTTTGAG
CCTACTATCTCAAGCGAGTCAGCAAAGGTTACGTGTTCCGCATGTTCCCT
AAGCCTTGGGAGGCGTTGCTGGAGAAGCCGGCCGGTGGCGTCGAGGTTCT
GGGCAAGTACAAGGACAAGCCGCTACTGAGGAATGTGGCTAAGGTCCGTA
CGTGGGGGAACACCTTTGAAAGGTTTGCAAAAACAATTTCACGTTCGCTG
AGTCCAAGAGCCTGGCACTGGCCAGTTTGA
back to top