mRNA_H-canaliculatus_F_contig1386.3065.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1386.3065.1
Unique NamemRNA_H-canaliculatus_F_contig1386.3065.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1386.3065.1 vs. uniprot
Match: A0A6H5KPH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPH9_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.740e-15
Identity = 48/89 (53.93%), Postives = 60/89 (67.42%), Query Frame = 2 
Query:   95 VLVAPTMLAEGKERKITAGTTAGLAKGHHPHMLDAADLLKASWSSVTAQTSAWYGLRYWGKAETLQKKMEAEITAEPGKVG*AKSMYPA 361
            +LVA  + AE K RK+  GT AGLA+G+HPH+LDAADLLK SW S+T  T A    R + KA+TL + MEAE+TA  GK   + S  PA
Sbjct:    1 MLVAHALRAEAKSRKMARGT-AGLAEGNHPHVLDAADLLKTSWDSITPTTIA----RCFVKAKTLPEDMEAELTAAHGKHRPSGSAAPA 84
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1386.3065.1 vs. uniprot
Match: A0A6H5KHX8_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHX8_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 3.270e-14
Identity = 47/93 (50.54%), Postives = 61/93 (65.59%), Query Frame = 2 
Query:   83 RAGTVLVAPTMLAEGKERKITAGTTAGLAKGHHPHMLDAADLLKASWSSVTAQTSAWYGLRYWGKAETLQKKMEAEITAEPGKVG*AKSMYPA 361
            +  T+LVA  + AE K RK+  GT AGLA+G+HPH+LDAADLLK +W S+T  T      R + KA+TL + MEAE+TA  GK   + S  PA
Sbjct:  221 KVSTMLVAHALRAEAKSRKMARGT-AGLAEGNHPHVLDAADLLKTAWGSITPTTIP----RCFVKAKTLPEDMEAELTAAHGKHRPSGSAAPA 308
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1386.3065.1 vs. uniprot
Match: A0A6H5KUT5_9PHAE (DDE-1 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUT5_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 2.000e-13
Identity = 42/84 (50.00%), Postives = 58/84 (69.05%), Query Frame = 2 
Query:   83 RAGTVLVAPTMLAEGKERKITAGTTAGLAKGHHPHMLDAADLLKASWSSVTAQTSAWYGLRYWGKAETLQKKMEAEITAEPGKV 334
            +  T+LVA T+ A+ K RK+ AGT  GLA+GH PH+ DAA+LLK +W+S+TAQ  A    R + KA+TL  +M AE+T + GK 
Sbjct:  273 KTSTMLVADTLRAQAKARKMKAGTM-GLAQGHQPHLRDAAELLKKAWASITAQDIA----RCFVKADTLPSEMAAELTTQHGKT 351
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1386.3065.1 vs. uniprot
Match: A0A6H5JP23_9PHAE (DDE-1 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP23_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 2.210e-13
Identity = 42/84 (50.00%), Postives = 58/84 (69.05%), Query Frame = 2 
Query:   83 RAGTVLVAPTMLAEGKERKITAGTTAGLAKGHHPHMLDAADLLKASWSSVTAQTSAWYGLRYWGKAETLQKKMEAEITAEPGKV 334
            +  T+LVA T+ A+ K RK+ AGT  GLA+GH PH+ DAA+LLK +W+S+TAQ  A    R + KA+TL  +M AE+T + GK 
Sbjct:  254 KTSTMLVADTLRAQAKARKMKAGTM-GLAQGHQPHLRDAAELLKKAWASITAQDIA----RCFVKADTLPSEMAAELTTQHGKT 332
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1386.3065.1 vs. uniprot
Match: A0A6H5JZF1_9PHAE (DDE-1 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZF1_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 2.530e-13
Identity = 43/84 (51.19%), Postives = 58/84 (69.05%), Query Frame = 2 
Query:   83 RAGTVLVAPTMLAEGKERKITAGTTAGLAKGHHPHMLDAADLLKASWSSVTAQTSAWYGLRYWGKAETLQKKMEAEITAEPGKV 334
            +A T+LVA T+ A+ K RK+ AGT  GLA+GH PH+ DAA+LL+ +W+SVT Q  A    R + KAETL + M AE+T + GK 
Sbjct:   23 KASTMLVADTLRAQAKARKMKAGTM-GLAQGHQPHVRDAAELLQKAWASVTPQDIA----RCFVKAETLPEDMAAELTKQHGKT 101
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1386.3065.1 vs. uniprot
Match: A0A6H5JMF1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF1_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.770e-13
Identity = 43/84 (51.19%), Postives = 59/84 (70.24%), Query Frame = 2 
Query:   83 RAGTVLVAPTMLAEGKERKITAGTTAGLAKGHHPHMLDAADLLKASWSSVTAQTSAWYGLRYWGKAETLQKKMEAEITAEPGKV 334
            +  T+LVA T+ A+ K RK+ AGT  GLA+GH PH+ DAA+LL+ +W+SVTAQ  A    R + KAETL ++M AE+T + GK 
Sbjct:  308 KTSTMLVADTLRAQAKARKMKAGTM-GLAQGHQPHVRDAAELLQKAWASVTAQDIA----RCFVKAETLPEEMAAELTKQHGKT 386
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1386.3065.1 vs. uniprot
Match: A0A6H5JH32_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH32_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.780e-13
Identity = 43/96 (44.79%), Postives = 64/96 (66.67%), Query Frame = 2 
Query:   47 RASISHAHLSYERAGTVLVAPTMLAEGKERKITAGTTAGLAKGHHPHMLDAADLLKASWSSVTAQTSAWYGLRYWGKAETLQKKMEAEITAEPGKV 334
            +  +++   ++ +  T+LVA T+ A+ K RK+ AGT  GLA+GH PH+ DAA+LL  +W+SVTAQ  A    R + KAETL ++M AE+T + GK 
Sbjct:  294 KTKVNYRKEAHVKTSTMLVADTLRAQTKARKMKAGTM-GLAQGHQPHVRDAAELLSKAWASVTAQDIA----RCFVKAETLPEEMGAELTKQHGKT 384
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1386.3065.1 vs. uniprot
Match: A0A6H5L4D9_9PHAE (DDE-1 domain-containing protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4D9_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 2.790e-13
Identity = 44/83 (53.01%), Postives = 58/83 (69.88%), Query Frame = 2 
Query:   83 RAGTVLVAPTMLAEGKERKITAGTTAGLAKGHHPHMLDAADLLKASWSSVTAQTSAWYGLRYWGKAETLQKKMEAEITAEPGK 331
            +  T+LVA T+ AE K RK+ AGT  GLA+GH PH+ DAA+LL+ +W+SVTAQ  A    R + KAETL  +M AE+T + GK
Sbjct:  327 KTSTMLVADTLRAEAKARKMKAGTM-GLAQGHQPHVRDAAELLQKAWASVTAQDIA----RCFVKAETLPDEMAAELTKQHGK 404
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1386.3065.1 vs. uniprot
Match: A0A6H5JCF6_9PHAE (DDE-1 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCF6_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.390e-12
Identity = 42/84 (50.00%), Postives = 58/84 (69.05%), Query Frame = 2 
Query:   83 RAGTVLVAPTMLAEGKERKITAGTTAGLAKGHHPHMLDAADLLKASWSSVTAQTSAWYGLRYWGKAETLQKKMEAEITAEPGKV 334
            +  T+LVA T+ A+ K RK+ AGT  GLA+GH PH+ DAA+ L+ +W+SVTAQ  A    R + KAETL ++M AE+T + GK 
Sbjct:  196 KTSTMLVADTLRAQAKARKMKAGTM-GLAQGHQPHVRDAAERLQKAWASVTAQDIA----RCFVKAETLPEEMAAELTKQHGKT 274
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1386.3065.1 vs. uniprot
Match: A0A6H5J9E2_9PHAE (DDE-1 domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9E2_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 2.330e-12
Identity = 46/93 (49.46%), Postives = 60/93 (64.52%), Query Frame = 2 
Query:   83 RAGTVLVAPTMLAEGKERKITAGTTAGLAKGHHPHMLDAADLLKASWSSVTAQTSAWYGLRYWGKAETLQKKMEAEITAEPGKVG*AKSMYPA 361
            +  T+LVA  + AE K RK+  GT AGLA+G+HPH+LDAADLLK +   +T  T A    R + KA+TL + MEAE+TA  GK   + S  PA
Sbjct:  257 KVSTMLVAHALRAEAKSRKMARGT-AGLAEGNHPHVLDAADLLKTARGRITPTTIA----RCFVKAKTLPEDMEAELTAAHGKHRPSGSAAPA 344
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1386.3065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5KPH9_9PHAE1.740e-1553.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHX8_9PHAE3.270e-1450.54DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KUT5_9PHAE2.000e-1350.00DDE-1 domain-containing protein n=4 Tax=Ectocarpus... [more]
A0A6H5JP23_9PHAE2.210e-1350.00DDE-1 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5JZF1_9PHAE2.530e-1351.19DDE-1 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5JMF1_9PHAE2.770e-1351.19DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JH32_9PHAE2.780e-1344.79HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5L4D9_9PHAE2.790e-1353.01DDE-1 domain-containing protein n=8 Tax=Ectocarpus... [more]
A0A6H5JCF6_9PHAE1.390e-1250.00DDE-1 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5J9E2_9PHAE2.330e-1249.46DDE-1 domain-containing protein (Fragment) n=2 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1386contigH-canaliculatus_F_contig1386:14231..14887 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-25_000800.1
Exons2
Model size460
Cds size228
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1386.3065.1prot_H-canaliculatus_F_contig1386.3065.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1386 14343..14767 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929127.800345-UTR-H-canaliculatus_F_contig1386:14230..143421622929127.800345-UTR-H-canaliculatus_F_contig1386:14230..14342Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1386 14231..14342 +
1696845688.8280544-UTR-H-canaliculatus_F_contig1386:14230..143421696845688.8280544-UTR-H-canaliculatus_F_contig1386:14230..14342Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1386 14231..14342 +
1622929127.866174-UTR-H-canaliculatus_F_contig1386:14767..148871622929127.866174-UTR-H-canaliculatus_F_contig1386:14767..14887Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1386 14768..14887 +
1696845688.8593178-UTR-H-canaliculatus_F_contig1386:14767..148871696845688.8593178-UTR-H-canaliculatus_F_contig1386:14767..14887Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1386 14768..14887 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929127.8126729-CDS-H-canaliculatus_F_contig1386:14342..144941622929127.8126729-CDS-H-canaliculatus_F_contig1386:14342..14494Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1386 14343..14494 +
1696845688.8388875-CDS-H-canaliculatus_F_contig1386:14342..144941696845688.8388875-CDS-H-canaliculatus_F_contig1386:14342..14494Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1386 14343..14494 +
1622929127.8384295-CDS-H-canaliculatus_F_contig1386:14691..147671622929127.8384295-CDS-H-canaliculatus_F_contig1386:14691..14767Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1386 14692..14767 +
1696845688.84988-CDS-H-canaliculatus_F_contig1386:14691..147671696845688.84988-CDS-H-canaliculatus_F_contig1386:14691..14767Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1386 14692..14767 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1386.3065.1

>prot_H-canaliculatus_F_contig1386.3065.1 ID=prot_H-canaliculatus_F_contig1386.3065.1|Name=mRNA_H-canaliculatus_F_contig1386.3065.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=76bp
MLAEGKERKITAGTTAGLAKGHHPHMLDAADLLKASWSSVTAQTSAWYGL
RYWGKAETLQKKMEAEITAEPGKVG*
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mRNA from alignment at H-canaliculatus_F_contig1386:14231..14887+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1386.3065.1 ID=mRNA_H-canaliculatus_F_contig1386.3065.1|Name=mRNA_H-canaliculatus_F_contig1386.3065.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=657bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1386:14231..14887+ (Hapterophycus canaliculatus Oshoro5f female)
GCTGGCCCCAATTCTTTGGCGCTTTTTCTTGAGCAACCCAAAATTCCGAG
CCTCGATTTCTCACGCACATCTTTCTTACGAGCGGGCCGGCACTGTACTC
GTGGCTCCGACAATGCTCGCCGAGGGCAAGGAACGCAAGATAACTGCAGG
AACAACAGCGGGATTGGCTAAGGGACACCACCCACATATGCTCGACGCCG
CAGACCTTCTCAAGGCATCCTGGAGCAGCGTCACTGCACAGACCAGTGCC
TGGTACGGCCTAAGGTAAAACTGTGCGACTTAGACATCTAGTCTGCTGTT
ACACGATGCGCCCTACTTCTGTTTTGCCTTGCTCGTTTTCTTCGCCGAAG
TTTTGTTTTTACTACCGTAGCATTTCCTTCGAGTTCTGCAGCAGGCACGT
ACTTTCTTAACTGACCCATTACGCTGCACTGTCTGCCTTTCCAACTTATC
TCCACACCAAGGTACTGGGGCAAAGCCGAGACCCTCCAAAAGAAGATGGA
GGCAGAGATCACGGCAGAGCCCGGAAAAGTCGGATGAGCGAAATCGATGT
ATCCGGCAAAGGAACTCATGGGACCCTCAACATAATGAGCTCTCGCGTGG
CCCAGACGAAGGATCATGGTTCTCCCGCCGACACGTTGTTCGTGGATCTC
CTGGCGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1386:14231..14887+

>mRNA_H-canaliculatus_F_contig1386.3065.1 ID=mRNA_H-canaliculatus_F_contig1386.3065.1|Name=mRNA_H-canaliculatus_F_contig1386.3065.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=456bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1386:14231..14887+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTCGCCGAGGGCAAGGAACGCAAGATAACTGCAGGAACAACAGCGGG
ATTGGCTAAGGGACACCACCCACATATGCTCGACGCCGCAGACCTTCTCA
AGGCATCCTGGAGCAGCGTCACTGCACAGACCAGTGCCTGGTACGGCCTA
AGATGCTCGCCGAGGGCAAGGAACGCAAGATAACTGCAGGAACAACAGCG
GGATTGGCTAAGGGACACCACCCACATATGCTCGACGCCGCAGACCTTCT
CAAGGCATCCTGGAGCAGCGTCACTGCACAGACCAGTGCCTGGTACGGCC
TAAGGTACTGGGGCAAAGCCGAGACCCTCCAAAAGAAGATGGAGGCAGAG
ATCACGGCAGAGCCCGGAAAAGTCGGATGAGTACTGGGGCAAAGCCGAGA
CCCTCCAAAAGAAGATGGAGGCAGAGATCACGGCAGAGCCCGGAAAAGTC
GGATGA
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