mRNA_H-canaliculatus_F_contig13854.3059.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13854.3059.1
Unique NamemRNA_H-canaliculatus_F_contig13854.3059.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13854.3059.1 vs. uniprot
Match: D7G0R2_ECTSI (Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R2_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 6.750e-29
Identity = 58/91 (63.74%), Postives = 71/91 (78.02%), Query Frame = 1 
Query:    1 NDLLEAVRRSDAALSSVVADWVSACQEDSSSAMTELLNFILLSCGAPSTEGPYEPPEGASLVDMDGEQWAELLQTVTDDIQGAPQLGKKAA 273
            N L+EAV R+D ALSSVV+DWVS+ +EDS  AM ELLNF+ L+CGAPSTEGPY PP   S+++MDGEQW ELL+ V +D+QG P  G K A
Sbjct:  208 NGLMEAVLRNDTALSSVVSDWVSSYKEDSDKAMKELLNFVFLACGAPSTEGPYGPPSDVSVIEMDGEQWVELLKVVIEDMQGQP--GTKGA 296
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BLAST of mRNA_H-canaliculatus_F_contig13854.3059.1 vs. uniprot
Match: A0A6H5J7R4_9PHAE (SCD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7R4_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 2.250e-18
Identity = 40/63 (63.49%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:   64 VSACQEDSSSAMTELLNFILLSCGAPSTEGPYEPPEGASLVDMDGEQWAELLQTVTDDIQGAP 252
            VS+ ++DS  AM ELLNFI L+CGAPST GPY PP   S+++MDGEQWAELL+ V +D+QG P
Sbjct:    3 VSSYKKDSDKAMQELLNFIFLACGAPSTAGPYGPPADVSVIEMDGEQWAELLKVVIEDMQGQP 65
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13854.3059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0R2_ECTSI6.750e-2963.74Sister chromatid cohesion complex Cohesin, subunit... [more]
A0A6H5J7R4_9PHAE2.250e-1863.49SCD domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13854contigH-canaliculatus_F_contig13854:1080..2355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.9
Seed ortholog evalue2.6e-24
Seed eggNOG ortholog2880.D7G0R2
Preferred nameIRR1
KEGG koko:K06671
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
GOsGO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000798,GO:0000819,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005829,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007127,GO:0007129,GO:0007135,GO:0008150,GO:0008278,GO:0008608,GO:0009987,GO:0010789,GO:0016043,GO:0022402,GO:0022414,GO:0022607,GO:0030892,GO:0030893,GO:0030999,GO:0031619,GO:0031974,GO:0031981,GO:0032991,GO:0034990,GO:0034991,GO:0043060,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045132,GO:0045143,GO:0045144,GO:0048285,GO:0050000,GO:0051177,GO:0051179,GO:0051234,GO:0051276,GO:0051303,GO:0051310,GO:0051311,GO:0051316,GO:0051321,GO:0051455,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0061982,GO:0061983,GO:0070013,GO:0070192,GO:0071840,GO:0098813,GO:0140013,GO:0140014,GO:1903046,GO:1903047
EggNOG free text desc.chromosome segregation
EggNOG OGsCOG5537@1,KOG2011@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Hectar predicted targeting categoryother localisation
Exons3
Model size278
Cds size276
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13854.3059.1prot_H-canaliculatus_F_contig13854.3059.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13854 1080..2353 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929126.9206066-CDS-H-canaliculatus_F_contig13854:1079..11421622929126.9206066-CDS-H-canaliculatus_F_contig13854:1079..1142Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13854 1080..1142 +
1696845688.5263941-CDS-H-canaliculatus_F_contig13854:1079..11421696845688.5263941-CDS-H-canaliculatus_F_contig13854:1079..1142Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13854 1080..1142 +
1622929126.9418976-CDS-H-canaliculatus_F_contig13854:1619..17271622929126.9418976-CDS-H-canaliculatus_F_contig13854:1619..1727Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13854 1620..1727 +
1696845688.5395596-CDS-H-canaliculatus_F_contig13854:1619..17271696845688.5395596-CDS-H-canaliculatus_F_contig13854:1619..1727Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13854 1620..1727 +
1622929127.0105693-CDS-H-canaliculatus_F_contig13854:2248..23531622929127.0105693-CDS-H-canaliculatus_F_contig13854:2248..2353Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13854 2249..2353 +
1696845688.5479019-CDS-H-canaliculatus_F_contig13854:2248..23531696845688.5479019-CDS-H-canaliculatus_F_contig13854:2248..2353Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13854 2249..2353 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13854.3059.1

>prot_H-canaliculatus_F_contig13854.3059.1 ID=prot_H-canaliculatus_F_contig13854.3059.1|Name=mRNA_H-canaliculatus_F_contig13854.3059.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=92bp
NDLLEAVRRSDAALSSVVADWVSACQEDSSSAMTELLNFILLSCGAPSTE
GPYEPPEGASLVDMDGEQWAELLQTVTDDIQGAPQLGKKAAS
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mRNA from alignment at H-canaliculatus_F_contig13854:1080..2355+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13854.3059.1 ID=mRNA_H-canaliculatus_F_contig13854.3059.1|Name=mRNA_H-canaliculatus_F_contig13854.3059.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1276bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13854:1080..2355+ (Hapterophycus canaliculatus Oshoro5f female)
AACGACCTGCTGGAGGCCGTGCGCCGCAGCGACGCCGCTCTGTCGTCGGT
GGTCGCTGACTGGGTGAGAGGGAGAGACAGCGACGGGGGGGGAGGAAGGG
GGAGGTGGAGGGGGTGGAGAGAAGGAGGGACTTTTGAGGGGTCACGGGAT
GAGAGATTGAGAAAGAGACATGGGTAGGTGGAGACTGTCCCCTGTGCGCG
ATGTGCGATGTGTGTCGAGGCGTCTTTGCCTGGCTGCGAAGCCGCGAGAG
GTAAGAGGGAAGGCTGTACTCCTCGATGTCGACCTTTTTTATCGCTGGTC
TGATGACGCGAGGGTGAAGAGTGGGGGAGGGATAAGGCCCTGCCTGCCAG
CCCGTGCCTTTCTTTCGGTGCTTGGTAATCGTCTTAAGGCGAACCCACAC
CCTCTGTTGTTGGTTCACCGACATATCGCACGGACAGCAGCTGTAGCACA
TGAAGCGCCGGGCGTGAATATTTTTGGGGAAGTTTTGAAAGCGATCTGCT
TCTCGTTTTGGCCTTGTGATCGTGTTCTCTACCAATTCAGGTGTCGGCCT
GCCAAGAGGACAGCAGCTCCGCTATGACGGAACTCCTCAATTTCATCCTG
CTTTCCTGCGGAGCCCCCTCCACCGAGGGCCCCTACGAGCCGCCTGAGGT
ACCGGGATTCAAAGCAGAGACTCGTGTATTTTAGATTTGAGGAAATGCAA
GGGCGAACCAAAGCTCACAGAGACGGACAGCAGCAGCAACGATGAGAAGC
AGCAATACTTTCCAAAATGGCATACTGGCATGGTAACGAAGAATCGCCCA
CAAAGCTTATTCCAAGAACAACTTTGCATCCCTTGTGGCGATTCTGGAAC
CTTTGGCACGCCTTTCCGCCCTTGCCCGTCGTGTCACGAGTTAATGTTAA
TGTTGATTAATGTCGATATCAATGTTAAAGTTAATGTAACGTTAATGTTG
ATGTTAATGTTAATGTTAATGTTAATGCAAATTTTGATGTTCACGTGTAA
GATTTTTGGGTCGCACCGCTCGGCCGCTTTCGCTCTGTCGCTGTTTCTCT
CGATATCTTTCTCTGCCTTCTGTCTCGTGCGGTTCGTTTCTTCTTTTGCC
GCCGCTTATTCCCCTCTCGGCCTGCTTCCCTTTCCCCTTGGTGCGCTCCC
TTTCGCTACGCTGCTGCAGGGCGCGTCCTTGGTCGACATGGACGGGGAGC
AATGGGCCGAGCTGCTTCAGACGGTGACGGACGACATCCAGGGCGCCCCT
CAGCTGGGGAAAAAAGCGGCGTCCTT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13854:1080..2355+

>mRNA_H-canaliculatus_F_contig13854.3059.1 ID=mRNA_H-canaliculatus_F_contig13854.3059.1|Name=mRNA_H-canaliculatus_F_contig13854.3059.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=552bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13854:1080..2355+ (Hapterophycus canaliculatus Oshoro5f female)
AACGACCTGCTGGAGGCCGTGCGCCGCAGCGACGCCGCTCTGTCGTCGGT
GGTCGCTGACTGGAACGACCTGCTGGAGGCCGTGCGCCGCAGCGACGCCG
CTCTGTCGTCGGTGGTCGCTGACTGGGTGTCGGCCTGCCAAGAGGACAGC
AGCTCCGCTATGACGGAACTCCTCAATTTCATCCTGCTTTCCTGCGGAGC
CCCCTCCACCGAGGGCCCCTACGAGCCGCCTGAGGTGTCGGCCTGCCAAG
AGGACAGCAGCTCCGCTATGACGGAACTCCTCAATTTCATCCTGCTTTCC
TGCGGAGCCCCCTCCACCGAGGGCCCCTACGAGCCGCCTGAGGGCGCGTC
CTTGGTCGACATGGACGGGGAGCAATGGGCCGAGCTGCTTCAGACGGTGA
CGGACGACATCCAGGGCGCCCCTCAGCTGGGGAAAAAAGCGGCGTCCGGC
GCGTCCTTGGTCGACATGGACGGGGAGCAATGGGCCGAGCTGCTTCAGAC
GGTGACGGACGACATCCAGGGCGCCCCTCAGCTGGGGAAAAAAGCGGCGT
CC
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