mRNA_H-canaliculatus_F_contig13854.3058.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13854.3058.1
Unique NamemRNA_H-canaliculatus_F_contig13854.3058.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13854.3058.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13854contigH-canaliculatus_F_contig13854:77..1036 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size290
Cds size288
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13854.3058.1prot_H-canaliculatus_F_contig13854.3058.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13854 77..1034 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929126.7941704-CDS-H-canaliculatus_F_contig13854:76..1261622929126.7941704-CDS-H-canaliculatus_F_contig13854:76..126Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13854 77..126 +
1696845688.492344-CDS-H-canaliculatus_F_contig13854:76..1261696845688.492344-CDS-H-canaliculatus_F_contig13854:76..126Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13854 77..126 +
1622929126.8130107-CDS-H-canaliculatus_F_contig13854:391..4761622929126.8130107-CDS-H-canaliculatus_F_contig13854:391..476Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13854 392..476 +
1696845688.5011415-CDS-H-canaliculatus_F_contig13854:391..4761696845688.5011415-CDS-H-canaliculatus_F_contig13854:391..476Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13854 392..476 +
1622929126.832161-CDS-H-canaliculatus_F_contig13854:881..10341622929126.832161-CDS-H-canaliculatus_F_contig13854:881..1034Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13854 882..1034 +
1696845688.5100574-CDS-H-canaliculatus_F_contig13854:881..10341696845688.5100574-CDS-H-canaliculatus_F_contig13854:881..1034Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13854 882..1034 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13854.3058.1

>prot_H-canaliculatus_F_contig13854.3058.1 ID=prot_H-canaliculatus_F_contig13854.3058.1|Name=mRNA_H-canaliculatus_F_contig13854.3058.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=96bp
GEEGVEEDYEEPTPGTRKKRTRRASAPPAPSTKNASGGAKNTAAKKKAAA
AAAAAAKGRRKSTGGATIARGGKGVSAGATADDESDGEGDGEEFTS
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mRNA from alignment at H-canaliculatus_F_contig13854:77..1036+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13854.3058.1 ID=mRNA_H-canaliculatus_F_contig13854.3058.1|Name=mRNA_H-canaliculatus_F_contig13854.3058.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=960bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13854:77..1036+ (Hapterophycus canaliculatus Oshoro5f female)
GGGGAAGAGGGCGTCGAAGAGGATTACGAGGAGCCGACGCCAGGGACGAG
GTACGCCGTCGGGTCGCAGCTTGTGAAGCGTGTGCTTCGTTCCCCGCTCT
CTTTCCCGCGCTCTCTCTTCGTCCCCTTCTCTCCCCTCTCTCAAGCTGCT
CGAGTCGCTGCTCCGCTGACCTCTCCCGCGCACGCCGTCAAGTGAAATTT
TTCGGGGCCCTCCTCCTCTGCTTCTTGTCTTGTCGACCATCCGCACCGCA
TGCTCGTACGTTGCAGTCATGCCCCAAGTCCCACCTCCCAACCGTCGCGA
CCACTCTCCGCGCAGGAAGAAACGCACGCGCCGCGCCTCTGCACCCCCGG
CCCCCTCCACAAAGAACGCCTCCGGAGGCGCGAAGAACACCGCGGCGAAG
GTCCGTGTTTGCTCTAGTCCCGCTCCTATCTTCCATATATATGTACGAGC
TCCAAGGGTATATTCCACTCGTCTTCTCGTAGGTTCTCCCCCCAACCAAT
CAGCTCTCCGTCCCTTTCAGAATGATCCTTGCGTGTGGTTTGACCCGCAG
GCTGGTATCCCCCCCCCCCCGCTCCCGGCCTGATCCTGGCCTTTGAGCCT
GTTTCTGAAGCAAGCCTCAACGAAAAAAAACGCGATGAACGATCCCGACG
CCGCCAGTAAGAACTTGGGGGCCGATGGTGCGAAAGTGTATACCTGTATC
TAACCTCTACGCCCGCCGTACGAACCTTCCGCGATTTCCTGCGTGCCCGC
TGATTCGTGTCGCTGTATTCTCGTTCCGGCCCCTCTTGCCGTCTTGCCGT
ACCAGAAAAAGGCAGCAGCAGCAGCAGCAGCAGCAGCGAAGGGGCGGCGG
AAATCAACGGGCGGCGCCACCATCGCCCGAGGAGGGAAAGGGGTTAGCGC
GGGCGCGACCGCGGACGACGAGAGCGATGGCGAAGGCGACGGCGAGGAGT
TCACCTCCGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13854:77..1036+

>mRNA_H-canaliculatus_F_contig13854.3058.1 ID=mRNA_H-canaliculatus_F_contig13854.3058.1|Name=mRNA_H-canaliculatus_F_contig13854.3058.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=576bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13854:77..1036+ (Hapterophycus canaliculatus Oshoro5f female)
GGGGAAGAGGGCGTCGAAGAGGATTACGAGGAGCCGACGCCAGGGACGAG
GGGGAAGAGGGCGTCGAAGAGGATTACGAGGAGCCGACGCCAGGGACGAG
GAAGAAACGCACGCGCCGCGCCTCTGCACCCCCGGCCCCCTCCACAAAGA
ACGCCTCCGGAGGCGCGAAGAACACCGCGGCGAAGGAAGAAACGCACGCG
CCGCGCCTCTGCACCCCCGGCCCCCTCCACAAAGAACGCCTCCGGAGGCG
CGAAGAACACCGCGGCGAAGAAAAAGGCAGCAGCAGCAGCAGCAGCAGCA
GCGAAGGGGCGGCGGAAATCAACGGGCGGCGCCACCATCGCCCGAGGAGG
GAAAGGGGTTAGCGCGGGCGCGACCGCGGACGACGAGAGCGATGGCGAAG
GCGACGGCGAGGAGTTCACCTCCAAAAAGGCAGCAGCAGCAGCAGCAGCA
GCAGCGAAGGGGCGGCGGAAATCAACGGGCGGCGCCACCATCGCCCGAGG
AGGGAAAGGGGTTAGCGCGGGCGCGACCGCGGACGACGAGAGCGATGGCG
AAGGCGACGGCGAGGAGTTCACCTCC
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