mRNA_H-canaliculatus_F_contig13839.3047.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13839.3047.1
Unique NamemRNA_H-canaliculatus_F_contig13839.3047.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13839.3047.1 vs. uniprot
Match: A0A7S2YS32_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YS32_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 8.150e-17
Identity = 41/90 (45.56%), Postives = 57/90 (63.33%), Query Frame = 1 
Query:    1 APGLFDPSAIKRDVGDNWALKLNNLKKLSFNLGAFYRENL--GVEYPDLDLDLTSVARASDADGIRALVQLLVGAAVSCGGKADYIQAIM 264
            AP  FDP+ I R +GDNWALK +NL+KL  NL  +Y E L    ++  +   LT++A+ SD + I  LV+LL  AAV+C  K  Y+Q I+
Sbjct:  136 APVYFDPTTIARHLGDNWALKSSNLRKLIRNLEDYYHEGLFKDADFGAIQNSLTAIAKESDTEAIANLVELLAAAAVTCADKGTYVQRIL 225
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BLAST of mRNA_H-canaliculatus_F_contig13839.3047.1 vs. uniprot
Match: A0A7S2SH48_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SH48_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 9.250e-17
Identity = 41/90 (45.56%), Postives = 57/90 (63.33%), Query Frame = 1 
Query:    1 APGLFDPSAIKRDVGDNWALKLNNLKKLSFNLGAFYRENLG--VEYPDLDLDLTSVARASDADGIRALVQLLVGAAVSCGGKADYIQAIM 264
            +P  FDPS I R +GDNWALK +NL+KL  NL  +Y E L     + D+   + S++R SD D I  +V+L+  AAV+C  +ADY+  IM
Sbjct:   48 SPRDFDPSTIARGLGDNWALKSSNLRKLVRNLETYYHEVLQKTANFEDVAASIPSISRNSDKDAIAKIVELVAAAAVTCENRADYVGWIM 137
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BLAST of mRNA_H-canaliculatus_F_contig13839.3047.1 vs. uniprot
Match: A0A7S2IHL6_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IHL6_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.100e-16
Identity = 42/90 (46.67%), Postives = 58/90 (64.44%), Query Frame = 1 
Query:    1 APGLFDPSAIKRDVGDNWALKLNNLKKLSFNLGAFYRENLG--VEYPDLDLDLTSVARASDADGIRALVQLLVGAAVSCGGKADYIQAIM 264
            AP  FDP+ I RD+GDNWALK +NL+KL  NL ++Y E LG   ++  +   ++S+AR  D +GI  LV+L+ GA V C  K  +I  IM
Sbjct:   48 APDHFDPTTIARDLGDNWALKSSNLRKLCRNLESYYHEILGKDADFDSIGSSISSIARHGDHEGITVLVELVAGAVVHCEDKDVFIGRIM 137
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BLAST of mRNA_H-canaliculatus_F_contig13839.3047.1 vs. uniprot
Match: A0A7S1GI83_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GI83_CYCTE)

HSP 1 Score: 79.0 bits (193), Expect = 3.360e-15
Identity = 42/91 (46.15%), Postives = 57/91 (62.64%), Query Frame = 1 
Query:    1 APGLFDPSAIKRDVGDNWALKLNNLKKLSFNLGAFYRENLGVEYPDLDLDLTSV---ARASDADGIRALVQLLVGAAVSCGGKADYIQAIM 264
            AP  FDP+ I R +GDNWALK +NL+KL  NL  FY E+LG +  D DL  + V   AR+SD   I  L +L+  AAV+C  + +++  IM
Sbjct:   52 APDYFDPTTIARHLGDNWALKSSNLRKLLRNLEQFYHESLGKD-ADFDLQTSKVGAIARSSDRGAIAELFELVAAAAVTCENRGEFVGRIM 141
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BLAST of mRNA_H-canaliculatus_F_contig13839.3047.1 vs. uniprot
Match: A0A7S0C7K9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C7K9_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.720e-14
Identity = 34/85 (40.00%), Postives = 51/85 (60.00%), Query Frame = 1 
Query:    1 APGLFDPSAIKRDVGDNWALKLNNLKKLSFNLGAFYRENLGVEYPDLDLDLTSVARASDADGIRALVQLLVGAAVSCGGKADYIQ 255
            AP  FDP+ I R +GDNWALK +NL+KL  NL  +Y   L        + ++ ++R SD + I +L +L++ AAV C  K  ++Q
Sbjct:   18 APTFFDPTTIARHLGDNWALKSSNLRKLIRNLETYYHVELHKNANFSTVSVSDISRNSDPESIASLFELIIAAAVKCENKGVFVQ 102
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BLAST of mRNA_H-canaliculatus_F_contig13839.3047.1 vs. uniprot
Match: A0A6U3RWQ0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3RWQ0_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 4.110e-14
Identity = 39/90 (43.33%), Postives = 56/90 (62.22%), Query Frame = 1 
Query:    1 APGLFDPSAIKRDVGDNWALKLNNLKKLSFNLGAFYRENLG--VEYPDLDLDLTSVARASDADGIRALVQLLVGAAVSCGGKADYIQAIM 264
            AP  FDP+ I R +GDNWALK +NL+KL  NL  ++ + LG   ++  +   ++S++R SD DGI  LV+L+  A V C  K  +I  IM
Sbjct:   48 APDHFDPTTIARGLGDNWALKSSNLRKLCRNLETYFHDILGKDADFEAVGSSISSISRHSDRDGIITLVELVAAATVQCEDKDVFIGRIM 137
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BLAST of mRNA_H-canaliculatus_F_contig13839.3047.1 vs. uniprot
Match: A0A1E7FVU8_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FVU8_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 5.590e-14
Identity = 37/92 (40.22%), Postives = 57/92 (61.96%), Query Frame = 1 
Query:    1 APGLFDPSAIKRDVGDNWALKLNNLKKLSFNLGAFYRENLGVE----YPDLDLDLTSVARASDADGIRALVQLLVGAAVSCGGKADYIQAIM 264
            AP  FDP+ I R +GDNWALK +NL+KL  NL  +Y E+L  +    + ++  +L+ ++R  D   I  LV+L+  AAV+C  K +++  IM
Sbjct:   47 APNHFDPTTIARQLGDNWALKSSNLRKLVRNLQYYYHEDLQKDAAESFREVSSNLSKISRTGDTHAIEPLVELVAAAAVTCPQKTEFVGRIM 138
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BLAST of mRNA_H-canaliculatus_F_contig13839.3047.1 vs. uniprot
Match: A0A6P8G461_CLUHA (protein Hook homolog 1 n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A6P8G461_CLUHA)

HSP 1 Score: 73.6 bits (179), Expect = 2.690e-13
Identity = 39/82 (47.56%), Postives = 51/82 (62.20%), Query Frame = 1 
Query:   22 SAIKRDVGDNWALKLNNLKKLSFNLGAFYRENLGVEYPDLDL-DLTSVARASDADGIRALVQLLVGAAVSCGGKADYIQAIM 264
            S IK DVG+NW LK+NNLKK+   +  +Y E L  +  D  L DL  VA  SD + +  L+QL++G AV C  K +YIQ IM
Sbjct:   55 SRIKEDVGENWRLKMNNLKKILQMMVDYYNEILSQQISDFPLPDLVRVAEHSDPEELGRLLQLILGCAVKCDRKQEYIQVIM 136
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BLAST of mRNA_H-canaliculatus_F_contig13839.3047.1 vs. uniprot
Match: A0A7D9DAT1_PARCT (Uncharacterized protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9DAT1_PARCT)

HSP 1 Score: 71.6 bits (174), Expect = 3.960e-13
Identity = 40/93 (43.01%), Postives = 55/93 (59.14%), Query Frame = 1 
Query:    1 APGLFDP---SAIKRDVGDNWALKLNNLKKLSFNLGAFYRENLGVEYPDLDL-DLTSVARASDADGIRALVQLLVGAAVSCGGKADYIQAIMQ 267
            AP  FD    S +KRD GDNW LK +NLKKL   +  +Y E L ++     L D++ +A   D   +  L+QL++G AV+C  K +YIQ IMQ
Sbjct:   29 APDWFDDEWMSKVKRDAGDNWRLKCSNLKKLLKGIMDYYTEVLNMDIVGFTLPDVSCIAEKHDKTELGRLLQLILGCAVNCDEKQEYIQNIMQ 121
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BLAST of mRNA_H-canaliculatus_F_contig13839.3047.1 vs. uniprot
Match: W5MRA7_LEPOC (Hook microtubule tethering protein 1 n=6 Tax=Lepisosteidae TaxID=7915 RepID=W5MRA7_LEPOC)

HSP 1 Score: 72.0 bits (175), Expect = 9.350e-13
Identity = 40/82 (48.78%), Postives = 51/82 (62.20%), Query Frame = 1 
Query:   22 SAIKRDVGDNWALKLNNLKKLSFNLGAFYRENLGVEYPDLDL-DLTSVARASDADGIRALVQLLVGAAVSCGGKADYIQAIM 264
            S IK DVGDNW LK++NLKK+   +  +Y E LG +  D  L DL  VA  SD   +  L+QL++G AV C  K +YIQ IM
Sbjct:   59 SRIKEDVGDNWRLKVSNLKKILQMIVDYYNEVLGQQISDFTLPDLNLVAEHSDPVELGRLLQLILGCAVKCERKQEYIQIIM 140
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13839.3047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2YS32_9STRA8.150e-1745.56Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A7S2SH48_9STRA9.250e-1745.56Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S2IHL6_9STRA1.100e-1646.67Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S1GI83_CYCTE3.360e-1546.15Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A7S0C7K9_9STRA1.720e-1440.00Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A6U3RWQ0_9STRA4.110e-1443.33Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A1E7FVU8_9STRA5.590e-1440.22Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A6P8G461_CLUHA2.690e-1347.56protein Hook homolog 1 n=1 Tax=Clupea harengus Tax... [more]
A0A7D9DAT1_PARCT3.960e-1343.01Uncharacterized protein (Fragment) n=1 Tax=Paramur... [more]
W5MRA7_LEPOC9.350e-1348.78Hook microtubule tethering protein 1 n=6 Tax=Lepis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13839contigH-canaliculatus_F_contig13839:362..1336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue2.6e-13
Seed eggNOG ortholog2850.Phatr45285
Preferred nameHOOK3
KEGG koko:K16536,ko:K16611,ko:K16612
GOsGO:0000226,GO:0000242,GO:0001654,GO:0001745,GO:0001751,GO:0001754,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005801,GO:0005813,GO:0005815,GO:0005856,GO:0006810,GO:0006897,GO:0006996,GO:0007010,GO:0007017,GO:0007032,GO:0007033,GO:0007034,GO:0007040,GO:0007041,GO:0007097,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0007568,GO:0008017,GO:0008092,GO:0008104,GO:0008150,GO:0008283,GO:0008333,GO:0008340,GO:0009653,GO:0009887,GO:0009987,GO:0010256,GO:0010259,GO:0010721,GO:0012505,GO:0015630,GO:0015631,GO:0016043,GO:0016050,GO:0016192,GO:0016482,GO:0017016,GO:0017137,GO:0019827,GO:0019899,GO:0021846,GO:0022008,GO:0022027,GO:0030154,GO:0030182,GO:0030705,GO:0030900,GO:0031122,GO:0031267,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034451,GO:0034452,GO:0034453,GO:0034454,GO:0034613,GO:0042051,GO:0042461,GO:0042462,GO:0042802,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044380,GO:0044422,GO:0044424,GO:0044430,GO:0044431,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0045022,GO:0045202,GO:0045466,GO:0045467,GO:0045503,GO:0045505,GO:0045595,GO:0045596,GO:0046530,GO:0046907,GO:0048468,GO:0048513,GO:0048519,GO:0048523,GO:0048592,GO:0048666,GO:0048699,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0051020,GO:0051093,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051640,GO:0051641,GO:0051645,GO:0051647,GO:0051649,GO:0051656,GO:0051959,GO:0051960,GO:0051961,GO:0060284,GO:0060322,GO:0061351,GO:0065007,GO:0070695,GO:0070727,GO:0071539,GO:0071840,GO:0072393,GO:0072698,GO:0080171,GO:0090596,GO:0097150,GO:0097435,GO:0097708,GO:0098657,GO:0098727,GO:0098927,GO:1905508,GO:2000026
EggNOG free text desc.HOOK protein
EggNOG OGs2CMK1@1,2QQM8@2759,2XAQS@2836
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04812
Hectar predicted targeting categoryother localisation
Exons2
Model size267
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929125.43784-CDS-H-canaliculatus_F_contig13839:361..4421622929125.43784-CDS-H-canaliculatus_F_contig13839:361..442Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13839 362..442 +
1696845687.9379206-CDS-H-canaliculatus_F_contig13839:361..4421696845687.9379206-CDS-H-canaliculatus_F_contig13839:361..442Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13839 362..442 +
1622929125.4600863-CDS-H-canaliculatus_F_contig13839:1150..13361622929125.4600863-CDS-H-canaliculatus_F_contig13839:1150..1336Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13839 1151..1336 +
1696845687.9488254-CDS-H-canaliculatus_F_contig13839:1150..13361696845687.9488254-CDS-H-canaliculatus_F_contig13839:1150..1336Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13839 1151..1336 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13839.3047.1prot_H-canaliculatus_F_contig13839.3047.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13839 362..1336 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13839.3047.1

>prot_H-canaliculatus_F_contig13839.3047.1 ID=prot_H-canaliculatus_F_contig13839.3047.1|Name=mRNA_H-canaliculatus_F_contig13839.3047.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=89bp
APGLFDPSAIKRDVGDNWALKLNNLKKLSFNLGAFYRENLGVEYPDLDLD
LTSVARASDADGIRALVQLLVGAAVSCGGKADYIQAIMQ
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mRNA from alignment at H-canaliculatus_F_contig13839:362..1336+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13839.3047.1 ID=mRNA_H-canaliculatus_F_contig13839.3047.1|Name=mRNA_H-canaliculatus_F_contig13839.3047.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=975bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13839:362..1336+ (Hapterophycus canaliculatus Oshoro5f female)
GCTCCAGGACTGTTCGACCCCAGCGCGATCAAGCGAGACGTGGGAGACAA
CTGGGCTCTCAAGCTCAACAACCTCAAGAAGGTCAGTAAAGGCAAGGGAA
AGCTCGATCCCGTCGCGTCTCACCATTCCCGACCTCAACATAAGGGGACG
CTCATGCTTGTCACGGCGCGATTCGTTCACGAGAGAAATCCAGAGGAGCC
TCGTCGCATGGTCTGTCCCTGGATGGGGCGTTTCCGGCGACTTTTGGTGT
TTGTCTAGCGGGTATAGCGCAACATCTGCTTCCGCTCCGACTTTCAACCA
CGCACGCCAAATCCGTCACTTCGAGAAGCAAGGGAGGGCAGAGGAGAGAA
AGGAGAGGGGACGATGAAGGCTGGCCGCTGTCCGTAGTTACTGTTTGGCG
TGCTACCACGTGTAGAGTTGGGGGGGGTGCGCAGGGGCTCGGGTCGGTGA
GGAAGATGTGGCGAAACCTGCCATCCTTGGTGTCTGGGGTGTACTGCGGT
TGGTTCTGCTGTGCTCAAGGTGCGGCAAGAGCACCCAAGGCTTTACCGTC
GGCATCCTTGCGCTCAAGCGTAGCGCCCCTCCGGCGTAGCTCTGCAAGGG
TGCCAAACGGAGGCACACGGGCGGCCACGCACCGCCGTGGGCGAGATTTT
TTTCGTCATCACGGCGACGAATTTCAGGATCACCATGAGAACGGCATGCA
CTACTGTCGTGGGCACCCTCCACCGGCCCATCGTTTCCACCCACCCATCC
CACTACTCTCCCTCAACTTTTCCGAAAACTCACGACCAGCTGTCTTTCAA
CCTGGGCGCCTTCTATCGGGAGAATCTCGGCGTTGAGTACCCGGACCTAG
ACCTTGACCTCACCAGCGTAGCGAGGGCATCGGACGCTGACGGCATCCGC
GCCCTCGTGCAGCTGCTGGTCGGCGCAGCGGTGTCCTGCGGGGGGAAGGC
GGACTACATCCAGGCCATCATGCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13839:362..1336+

>mRNA_H-canaliculatus_F_contig13839.3047.1 ID=mRNA_H-canaliculatus_F_contig13839.3047.1|Name=mRNA_H-canaliculatus_F_contig13839.3047.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=534bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13839:362..1336+ (Hapterophycus canaliculatus Oshoro5f female)
GCTCCAGGACTGTTCGACCCCAGCGCGATCAAGCGAGACGTGGGAGACAA
CTGGGCTCTCAAGCTCAACAACCTCAAGAAGGCTCCAGGACTGTTCGACC
CCAGCGCGATCAAGCGAGACGTGGGAGACAACTGGGCTCTCAAGCTCAAC
AACCTCAAGAAGCTGTCTTTCAACCTGGGCGCCTTCTATCGGGAGAATCT
CGGCGTTGAGTACCCGGACCTAGACCTTGACCTCACCAGCGTAGCGAGGG
CATCGGACGCTGACGGCATCCGCGCCCTCGTGCAGCTGCTGGTCGGCGCA
GCGGTGTCCTGCGGGGGGAAGGCGGACTACATCCAGGCCATCATGCAGCT
GTCTTTCAACCTGGGCGCCTTCTATCGGGAGAATCTCGGCGTTGAGTACC
CGGACCTAGACCTTGACCTCACCAGCGTAGCGAGGGCATCGGACGCTGAC
GGCATCCGCGCCCTCGTGCAGCTGCTGGTCGGCGCAGCGGTGTCCTGCGG
GGGGAAGGCGGACTACATCCAGGCCATCATGCAG
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