mRNA_H-canaliculatus_F_contig13824.3041.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13824.3041.1
Unique NamemRNA_H-canaliculatus_F_contig13824.3041.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13824.3041.1 vs. uniprot
Match: D8LRQ5_ECTSI (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRQ5_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 1.650e-23
Identity = 64/92 (69.57%), Postives = 71/92 (77.17%), Query Frame = 2 
Query:  182 VLVASVRDHEGALNRLALSQDQAFLVWASSDSTCKAWELGGMDHTVNTQSCATY--KAGLSGILCMKANPLSVASASSDGTVHA-RIEGRAS 448
            VLVAS+R+H GA+NRLALSQDQAF V ASSDSTCK WEL GMDHTVN QS ATY  ++G    LCM  N  SVASASSDGTVH  ++E  AS
Sbjct:  901 VLVASLREHGGAVNRLALSQDQAFFVSASSDSTCKVWELRGMDHTVNPQSRATYSRQSGRLLDLCMVDNSHSVASASSDGTVHVWKVELAAS 992
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BLAST of mRNA_H-canaliculatus_F_contig13824.3041.1 vs. uniprot
Match: A0A6H5JSX2_9PHAE (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSX2_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 3.040e-23
Identity = 64/92 (69.57%), Postives = 71/92 (77.17%), Query Frame = 2 
Query:  182 VLVASVRDHEGALNRLALSQDQAFLVWASSDSTCKAWELGGMDHTVNTQSCATY--KAGLSGILCMKANPLSVASASSDGTVHA-RIEGRAS 448
            VLVAS+R+H GA+NRLALSQDQAF V ASSDSTCK WEL GMDHTV+ QS ATY  ++G    LCM  N  SVASASSDGTVH  R+E  AS
Sbjct: 1169 VLVASLREHGGAVNRLALSQDQAFFVSASSDSTCKVWELRGMDHTVSPQSRATYSRQSGRLLDLCMVDNSHSVASASSDGTVHVWRVELAAS 1260
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BLAST of mRNA_H-canaliculatus_F_contig13824.3041.1 vs. uniprot
Match: A0A8K1C2E6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C2E6_PYTOL)

HSP 1 Score: 68.6 bits (166), Expect = 7.870e-10
Identity = 43/106 (40.57%), Postives = 63/106 (59.43%), Query Frame = 2 
Query:  182 VLVASVRDHEGALNRLALSQDQAFLVWASSDSTCKAWELGGMDHTVNTQSCATY--KAGLSGILCMKANPLSVASASSDGTVHA-RIEGRASRDVAWRQGRTGGNF 490
            VLVA + +H GA++R+  +QD +FL  AS D T K W +  M+H++N  S +TY  +AG+   + +  N  SVASASS+GTVH  R++         +   T GNF
Sbjct: 1397 VLVAELAEHSGAVHRIGAAQDFSFLASASKDGTVKLWSIRSMNHSINQGSRSTYDGQAGVLTDMVVLDNSHSVASASSNGTVHVFRVD---------KVNATSGNF 1493
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BLAST of mRNA_H-canaliculatus_F_contig13824.3041.1 vs. uniprot
Match: A0A2D4CC38_PYTIN (Non-specific serine/threonine protein kinase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CC38_PYTIN)

HSP 1 Score: 67.4 bits (163), Expect = 1.650e-9
Identity = 43/93 (46.24%), Postives = 56/93 (60.22%), Query Frame = 2 
Query:  182 VLVASVRDHEGALNRLALSQDQAFLVWASSDSTCKAWELG-GMDHTVNTQSCATYKAGLSGILC---MKANPLSVASASSDGTVHARIEGRAS 448
            +LVA + +H GA+NR+  +QD +FL  AS+D T K W +G  M H+VN  S  TY  G  G+L    +  N  SVASASS+GTVH     R S
Sbjct:  138 ILVAELAEHSGAVNRIGAAQDYSFLASASNDGTVKLWSIGKSMQHSVNQGSRCTYD-GQGGVLTDMIVLDNCHSVASASSNGTVHVFRADRVS 229
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BLAST of mRNA_H-canaliculatus_F_contig13824.3041.1 vs. uniprot
Match: A0A484DWH5_BRELC (Non-specific serine/threonine protein kinase n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DWH5_BRELC)

HSP 1 Score: 66.6 bits (161), Expect = 3.590e-9
Identity = 40/84 (47.62%), Postives = 54/84 (64.29%), Query Frame = 2 
Query:  182 VLVASVRDHEGALNRLALSQDQAFLVWASSDSTCKAWELGGMDHTVNTQSCATYKAGLSGILC-MKA--NPLSVASASSDGTVH 424
            VLVA + +H GA+ R++ +QD +FL  AS+D T K W +  + H+VN  S  TY  G  G++  MK   N  SVASASSDG+VH
Sbjct: 1523 VLVAELAEHSGAVTRISAAQDYSFLASASNDGTVKIWSVRSLQHSVNQGSRCTYD-GQGGVITDMKVLTNSHSVASASSDGSVH 1605
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BLAST of mRNA_H-canaliculatus_F_contig13824.3041.1 vs. uniprot
Match: A0A5B8ME71_9CHLO (Non-specific serine/threonine protein kinase n=3 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8ME71_9CHLO)

HSP 1 Score: 58.5 bits (140), Expect = 1.950e-6
Identity = 33/84 (39.29%), Postives = 54/84 (64.29%), Query Frame = 2 
Query:  182 VLVASVRDHEGALNRLALSQDQAFLVWASSDSTCKAWELGGMDHTVNTQSCATY-KAGLSGILC--MKANPLSVASASSDGTVH 424
            +L++ + +H+ A+N+L++S+D  FL  AS D TCK W+   ++  ++ +S  TY K G   + C  +  +  SVASASSDG+VH
Sbjct:  959 ILISHLAEHKRAVNKLSISEDNFFLTSASDDGTCKIWDCRKLEKDISFKSRLTYSKQGGRILSCASLLQSKQSVASASSDGSVH 1042
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BLAST of mRNA_H-canaliculatus_F_contig13824.3041.1 vs. uniprot
Match: A0A0Q3FSM9_BRADI (Non-specific serine/threonine protein kinase n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=A0A0Q3FSM9_BRADI)

HSP 1 Score: 53.9 bits (128), Expect = 7.000e-5
Identity = 32/83 (38.55%), Postives = 46/83 (55.42%), Query Frame = 2 
Query:  182 VLVASVRDHEGALNRLALSQDQAFLVWASSDSTCKAWELGGMDHTVNTQSCATYKAGLSGILC--MKANPLSVASASSDGTVH 424
            VLVA +++H  ++N +A+S D AF V AS DS+ K W+   ++  +  +S  TY  G S  LC  M      V    SDGT+H
Sbjct:  916 VLVAHLQEHRMSVNDIAVSDDNAFFVTASDDSSIKIWDTRKLEKDIAFRSRLTYSLGSSRALCTTMLYGSSQVIVGDSDGTLH 998
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BLAST of mRNA_H-canaliculatus_F_contig13824.3041.1 vs. uniprot
Match: I1IDH0_BRADI (Non-specific serine/threonine protein kinase n=4 Tax=Pooideae TaxID=147368 RepID=I1IDH0_BRADI)

HSP 1 Score: 53.9 bits (128), Expect = 7.060e-5
Identity = 32/83 (38.55%), Postives = 46/83 (55.42%), Query Frame = 2 
Query:  182 VLVASVRDHEGALNRLALSQDQAFLVWASSDSTCKAWELGGMDHTVNTQSCATYKAGLSGILC--MKANPLSVASASSDGTVH 424
            VLVA +++H  ++N +A+S D AF V AS DS+ K W+   ++  +  +S  TY  G S  LC  M      V    SDGT+H
Sbjct: 1032 VLVAHLQEHRMSVNDIAVSDDNAFFVTASDDSSIKIWDTRKLEKDIAFRSRLTYSLGSSRALCTTMLYGSSQVIVGDSDGTLH 1114
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13824.3041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LRQ5_ECTSI1.650e-2369.57Non-specific serine/threonine protein kinase n=1 T... [more]
A0A6H5JSX2_9PHAE3.040e-2369.57Non-specific serine/threonine protein kinase n=1 T... [more]
A0A8K1C2E6_PYTOL7.870e-1040.57Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4CC38_PYTIN1.650e-946.24Non-specific serine/threonine protein kinase n=1 T... [more]
A0A484DWH5_BRELC3.590e-947.62Non-specific serine/threonine protein kinase n=1 T... [more]
A0A5B8ME71_9CHLO1.950e-639.29Non-specific serine/threonine protein kinase n=3 T... [more]
A0A0Q3FSM9_BRADI7.000e-538.55Non-specific serine/threonine protein kinase n=1 T... [more]
I1IDH0_BRADI7.060e-538.55Non-specific serine/threonine protein kinase n=4 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13824contigH-canaliculatus_F_contig13824:1921..2944 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.6
Seed ortholog evalue2.8e-21
Seed eggNOG ortholog2880.D8LRQ5
KEGG koko:K08333
KEGG Pathwayko04136,ko04138,ko04140,ko04371,map04136,map04138,map04140,map04371
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0005768,GO:0005770,GO:0005942,GO:0006464,GO:0006468,GO:0006605,GO:0006623,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006914,GO:0007034,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016236,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0019898,GO:0030242,GO:0031410,GO:0031967,GO:0031975,GO:0031982,GO:0032507,GO:0032991,GO:0033036,GO:0033365,GO:0034067,GO:0034271,GO:0034272,GO:0034613,GO:0035032,GO:0036211,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044232,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045053,GO:0045184,GO:0045185,GO:0045324,GO:0046907,GO:0051179,GO:0051234,GO:0051235,GO:0051641,GO:0051649,GO:0051651,GO:0061695,GO:0061919,GO:0065007,GO:0065008,GO:0070727,GO:0071561,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072665,GO:0072666,GO:0097708,GO:0098796,GO:0140096,GO:1901564,GO:1902494,GO:1990234
EggNOG free text desc.autophagy of peroxisome
EggNOG OGsKOG1240@1,KOG1240@2759
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size645
Cds size492
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13824.3041.1prot_H-canaliculatus_F_contig13824.3041.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13824 2072..2944 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929124.5213463-UTR-H-canaliculatus_F_contig13824:1920..20711622929124.5213463-UTR-H-canaliculatus_F_contig13824:1920..2071Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13824 1921..2071 +
1696845687.4790874-UTR-H-canaliculatus_F_contig13824:1920..20711696845687.4790874-UTR-H-canaliculatus_F_contig13824:1920..2071Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13824 1921..2071 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929124.539013-CDS-H-canaliculatus_F_contig13824:2071..22061622929124.539013-CDS-H-canaliculatus_F_contig13824:2071..2206Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13824 2072..2206 +
1696845687.492512-CDS-H-canaliculatus_F_contig13824:2071..22061696845687.492512-CDS-H-canaliculatus_F_contig13824:2071..2206Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13824 2072..2206 +
1622929124.5536773-CDS-H-canaliculatus_F_contig13824:2587..29441622929124.5536773-CDS-H-canaliculatus_F_contig13824:2587..2944Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13824 2588..2944 +
1696845687.5021477-CDS-H-canaliculatus_F_contig13824:2587..29441696845687.5021477-CDS-H-canaliculatus_F_contig13824:2587..2944Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13824 2588..2944 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13824.3041.1

>prot_H-canaliculatus_F_contig13824.3041.1 ID=prot_H-canaliculatus_F_contig13824.3041.1|Name=mRNA_H-canaliculatus_F_contig13824.3041.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=164bp
MSRRAASAGCVLVASVRDHEGALNRLALSQDQAFLVWASSDSTCKAWELG
GMDHTVNTQSCATYKAGLSGILCMKANPLSVASASSDGTVHARIEGRASR
DVAWRQGRTGGNFLGWDTRVPVCSKRTEARVGRRCFCSRRFCAHVTPRTP
EEWHFEKDGSVGRL
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mRNA from alignment at H-canaliculatus_F_contig13824:1921..2944+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13824.3041.1 ID=mRNA_H-canaliculatus_F_contig13824.3041.1|Name=mRNA_H-canaliculatus_F_contig13824.3041.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1024bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13824:1921..2944+ (Hapterophycus canaliculatus Oshoro5f female)
CGAGGTCGAGGTCTGCCCATCCTCCGACAACGGTAACTGCGGCTGTTGCG
GCTGCGGCGCAGAAGAAGCAGCAGTAGCAATAGCGACCGAAGCTGTCCCA
CTACGAGCACGGCGGTGGTGGTGGCGCCGGCGGCGGTAGTGTCGTCAGCA
GATGTCCCGACGAGCGGCCTCAGCAGGGTGTGTGCTGGTTGCCTCGGTGC
GAGACCACGAAGGGGCTCTCAACCGACTGGCGCTGTCGCAGGACCAAGCG
TTTCTCGTCTGGGCATCGTCGGACAGCACTTGCAAGGTATGGAGGGAAGG
CAAAGAGATGTGCGCTGTCACAGTGGCGTGAAGTGTCGCTTCGTGATTTC
ATGCCTTGCTTTGGTCGTGCAGTGCTCCGCTGGGCTTCGCCATGCCTCGC
TTCGCTGCAAGCCTGTGCGGTGCTCCGATGCGCTTTGTCTTCGTCTCTGT
GCGCTCTGATTGCTGTGCATTGCTTTGCTCTCTTCTGTGCTCTACGCCGC
TGTGCTTCACAACACTCAATGCGCGTCCCCTGTGCTTCTACAACTTTCCG
CTCTCTTGCGCACTCCTTTAATTTGCCGGACTGTGCATTGCTCCTCTTAT
TTCCGTCCTCAGTCTTACCACGCATCCCTTGGCTTCCCCAAAATGTGTTT
TGCTTTCCGATGTGCAGGCCTGGGAGCTAGGCGGGATGGATCACACGGTC
AACACGCAGTCGTGCGCGACATACAAGGCCGGGCTCTCCGGGATTCTGTG
TATGAAAGCGAATCCCCTCTCCGTCGCTTCGGCATCCTCAGATGGGACTG
TGCACGCGAGGATTGAAGGAAGGGCTTCTAGAGATGTAGCCTGGCGACAG
GGTCGAACAGGAGGCAACTTTCTTGGATGGGACACACGGGTTCCCGTATG
CTCGAAGCGGACCGAGGCGCGGGTCGGACGCCGTTGTTTTTGCTCCCGGC
GATTTTGCGCGCATGTGACGCCAAGGACCCCGGAAGAATGGCATTTCGAG
AAGGACGGCAGTGTTGGAAGGCTT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13824:1921..2944+

>mRNA_H-canaliculatus_F_contig13824.3041.1 ID=mRNA_H-canaliculatus_F_contig13824.3041.1|Name=mRNA_H-canaliculatus_F_contig13824.3041.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=984bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13824:1921..2944+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCCCGACGAGCGGCCTCAGCAGGGTGTGTGCTGGTTGCCTCGGTGCG
AGACCACGAAGGGGCTCTCAACCGACTGGCGCTGTCGCAGGACCAAGCGT
TTCTCGTCTGGGCATCGTCGGACAGCACTTGCAAGATGTCCCGACGAGCG
GCCTCAGCAGGGTGTGTGCTGGTTGCCTCGGTGCGAGACCACGAAGGGGC
TCTCAACCGACTGGCGCTGTCGCAGGACCAAGCGTTTCTCGTCTGGGCAT
CGTCGGACAGCACTTGCAAGGCCTGGGAGCTAGGCGGGATGGATCACACG
GTCAACACGCAGTCGTGCGCGACATACAAGGCCGGGCTCTCCGGGATTCT
GTGTATGAAAGCGAATCCCCTCTCCGTCGCTTCGGCATCCTCAGATGGGA
CTGTGCACGCGAGGATTGAAGGAAGGGCTTCTAGAGATGTAGCCTGGCGA
CAGGGTCGAACAGGAGGCAACTTTCTTGGATGGGACACACGGGTTCCCGT
ATGCTCGAAGCGGACCGAGGCGCGGGTCGGACGCCGTTGTTTTTGCTCCC
GGCGATTTTGCGCGCATGTGACGCCAAGGACCCCGGAAGAATGGCATTTC
GAGAAGGACGGCAGTGTTGGAAGGCTTGCCTGGGAGCTAGGCGGGATGGA
TCACACGGTCAACACGCAGTCGTGCGCGACATACAAGGCCGGGCTCTCCG
GGATTCTGTGTATGAAAGCGAATCCCCTCTCCGTCGCTTCGGCATCCTCA
GATGGGACTGTGCACGCGAGGATTGAAGGAAGGGCTTCTAGAGATGTAGC
CTGGCGACAGGGTCGAACAGGAGGCAACTTTCTTGGATGGGACACACGGG
TTCCCGTATGCTCGAAGCGGACCGAGGCGCGGGTCGGACGCCGTTGTTTT
TGCTCCCGGCGATTTTGCGCGCATGTGACGCCAAGGACCCCGGAAGAATG
GCATTTCGAGAAGGACGGCAGTGTTGGAAGGCTT
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