mRNA_H-canaliculatus_F_contig13824.3040.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13824.3040.1
Unique NamemRNA_H-canaliculatus_F_contig13824.3040.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13824.3040.1 vs. uniprot
Match: A0A6H5JSX2_9PHAE (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSX2_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.330e-10
Identity = 53/124 (42.74%), Postives = 62/124 (50.00%), Query Frame = 2 
Query:   29 SYRITSLPSL-----GMHTKAVGARRALALVGE*DEDGACGPGH---------ASNSYIQLQLCV*PGAVAPPQQHKQGKRSPAAPAWEISR----GARQDGAAVALVRKTKMLGVPPLPPDLG 346
            S  +++ P+L     GMHT AV ARRA+ALV   D DGA G            AS                       GK  P+APAWE+SR    G R D A VAL+R+ K LGVPPLPPDLG
Sbjct:  962 SSALSATPALLQSVTGMHTNAVDARRAMALVEHADVDGAAGSSGRHDNGSSYAASXXXXXXXXXXXXXXXXXXXXXXXGK--PSAPAWEVSRVGGVGGRPDDA-VALLRRAKALGVPPLPPDLG 1082
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13824.3040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JSX2_9PHAE2.330e-1042.74Non-specific serine/threonine protein kinase n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13824contigH-canaliculatus_F_contig13824:1059..1745 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size687
Cds size393
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13824.3040.1prot_H-canaliculatus_F_contig13824.3040.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13824 1065..1457 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929124.1336713-UTR-H-canaliculatus_F_contig13824:1058..10641622929124.1336713-UTR-H-canaliculatus_F_contig13824:1058..1064Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13824 1059..1064 +
1696845687.4452577-UTR-H-canaliculatus_F_contig13824:1058..10641696845687.4452577-UTR-H-canaliculatus_F_contig13824:1058..1064Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13824 1059..1064 +
1622929124.325841-UTR-H-canaliculatus_F_contig13824:1457..17451622929124.325841-UTR-H-canaliculatus_F_contig13824:1457..1745Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13824 1458..1745 +
1696845687.465385-UTR-H-canaliculatus_F_contig13824:1457..17451696845687.465385-UTR-H-canaliculatus_F_contig13824:1457..1745Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13824 1458..1745 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929124.3127954-CDS-H-canaliculatus_F_contig13824:1064..14571622929124.3127954-CDS-H-canaliculatus_F_contig13824:1064..1457Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13824 1065..1457 +
1696845687.4544003-CDS-H-canaliculatus_F_contig13824:1064..14571696845687.4544003-CDS-H-canaliculatus_F_contig13824:1064..1457Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13824 1065..1457 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13824.3040.1

>prot_H-canaliculatus_F_contig13824.3040.1 ID=prot_H-canaliculatus_F_contig13824.3040.1|Name=mRNA_H-canaliculatus_F_contig13824.3040.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=131bp
MSNTPCNLLPHHESPLARDAHQSGGRAESSGTGGGVGRGRSLRARPRVQQ
LHTATALRLARRCGAAATAQAGEKVPRCSSVGNIPGGQARWRGGGAREKD
QDAWSAPVAARSRRLNETRGKLFGDGYCLC*
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mRNA from alignment at H-canaliculatus_F_contig13824:1059..1745+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13824.3040.1 ID=mRNA_H-canaliculatus_F_contig13824.3040.1|Name=mRNA_H-canaliculatus_F_contig13824.3040.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=687bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13824:1059..1745+ (Hapterophycus canaliculatus Oshoro5f female)
CAGCAAATGAGTAACACCCCCTGTAATCTCCTACCGCATCACGAGTCTCC
CCTCGCTAGGGATGCACACCAAAGCGGTGGGCGCGCGGAGAGCTCTGGCA
CTGGTGGGGGAGTAGGACGAGGACGGAGCCTGCGGGCCCGGCCACGCGTC
CAACAGCTACATACAGCTACAGCTTTGCGTCTAGCCCGGCGCTGTGGCGC
CGCCGCAACAGCACAAGCAGGGGAAAAGGTCCCCCGCTGCTCCAGCGTGG
GAAATATCCCGGGGGGCCAGGCAAGATGGCGCGGCGGTGGCGCTCGTGAG
AAAGACCAAGATGCTTGGAGTGCCCCCGTTGCCGCCAGATCTCGGAGGTT
AAATGAAACGCGAGGAAAACTCTTCGGTGATGGGTATTGCCTGTGTTAAG
AGTGGCTCTCCAGCACTCGTTCTTGTACGCACGGACGCGCCGACGCACTC
CCTGGGAACTCCCTGTTTTAGCAATCAAACGGATAGAGCGACCTCTGCTT
CGTCTCAACCAGCTTCGTGCCTACTGTGAAGAACGGATGGCGTTGACGGG
CGCCGGCAACAAGTAATGCGAGATACGCCTATGGCTCTCATGAAGTTTTG
TCATGCGCCCCCAAGCCAAAACAACAAACCTACAGCTAAGAAAGGCTTCG
GGGCTCCGAGGGTCACAAGGCACCCCCGCCGCGATCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13824:1059..1745+

>mRNA_H-canaliculatus_F_contig13824.3040.1 ID=mRNA_H-canaliculatus_F_contig13824.3040.1|Name=mRNA_H-canaliculatus_F_contig13824.3040.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=786bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13824:1059..1745+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAGTAACACCCCCTGTAATCTCCTACCGCATCACGAGTCTCCCCTCGC
TAGGGATGCACACCAAAGCGGTGGGCGCGCGGAGAGCTCTGGCACTGGTG
GGGGAGTAGGACGAGGACGGAGCCTGCGGGCCCGGCCACGCGTCCAACAG
CTACATACAGCTACAGCTTTGCGTCTAGCCCGGCGCTGTGGCGCCGCCGC
AACAGCACAAGCAGGGGAAAAGGTCCCCCGCTGCTCCAGCGTGGGAAATA
TCCCGGGGGGCCAGGCAAGATGGCGCGGCGGTGGCGCTCGTGAGAAAGAC
CAAGATGCTTGGAGTGCCCCCGTTGCCGCCAGATCTCGGAGGTTAAATGA
AACGCGAGGAAAACTCTTCGGTGATGGGTATTGCCTGTGTTAAATGAGTA
ACACCCCCTGTAATCTCCTACCGCATCACGAGTCTCCCCTCGCTAGGGAT
GCACACCAAAGCGGTGGGCGCGCGGAGAGCTCTGGCACTGGTGGGGGAGT
AGGACGAGGACGGAGCCTGCGGGCCCGGCCACGCGTCCAACAGCTACATA
CAGCTACAGCTTTGCGTCTAGCCCGGCGCTGTGGCGCCGCCGCAACAGCA
CAAGCAGGGGAAAAGGTCCCCCGCTGCTCCAGCGTGGGAAATATCCCGGG
GGGCCAGGCAAGATGGCGCGGCGGTGGCGCTCGTGAGAAAGACCAAGATG
CTTGGAGTGCCCCCGTTGCCGCCAGATCTCGGAGGTTAAATGAAACGCGA
GGAAAACTCTTCGGTGATGGGTATTGCCTGTGTTAA
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