mRNA_H-canaliculatus_F_contig13820.3037.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13820.3037.1
Unique NamemRNA_H-canaliculatus_F_contig13820.3037.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig13820.3037.1 vs. uniprot
Match: H6SIC8_PARPM (Uncharacterized protein (Fragment) n=1 Tax=Pararhodospirillum photometricum DSM 122 TaxID=1150469 RepID=H6SIC8_PARPM)

HSP 1 Score: 98.2 bits (243), Expect = 2.490e-24
Identity = 59/114 (51.75%), Postives = 68/114 (59.65%), Query Frame = 2
Query:   29 QFIPTFFNRCGFGPPVSVT*PSS*SCLDHSVSGLIHLTHSP----Y*DSLSLRLHLTA*AC*IDQVRC---------HPSRGLQLFVGDRFQKLFHSPCRGAFHLSLTVLVHYR 331
            Q IP FFNR GFGPPV VT PS+   LDH VSGLI  T  P    +  + + RL L        Q++           P + L+L VG RFQ+LFHSP RGAFHLSLTVLVHYR
Sbjct:    2 QVIPVFFNRRGFGPPVGVTPPSTCPWLDHPVSGLIRRTRRPLKTRFRCASTYRLKLAR------QIKSLTHYTKGTPSPPKELRLLVGIRFQELFHSPHRGAFHLSLTVLVHYR 109          
BLAST of mRNA_H-canaliculatus_F_contig13820.3037.1 vs. uniprot
Match: A0A132GPZ6_9BACT (Uncharacterized protein n=2 Tax=bacterium P201 TaxID=1768112 RepID=A0A132GPZ6_9BACT)

HSP 1 Score: 93.6 bits (231), Expect = 8.470e-21
Identity = 61/120 (50.83%), Postives = 74/120 (61.67%), Query Frame = 1
Query:    1 SLIGLSPLGTIHPDLFQQVWVRTSS*CYLTFILIMPRSLGFGSDPSNSFAL-----LRLAFAAP-TPNGLS---LLDRPSTLSPLKGAPTVCRRPVSETVSLPLSGCFSPFPHGTGSLSV 333
            SLIGLS L T HP+ FQ++ VR S  CY  F L M RSLGF S P+ S A      LRL  ++P T + ++    + + +     K APT CRR VS T+SLP  GCFSPFPHGT SLSV
Sbjct:   11 SLIGLSLLHTPHPEAFQRLLVRPSIPCYRDFSLDMCRSLGFASAPAYSTASSASLSLRLGASSPLTSHAMATRRFIMQKARRHHEKMAPTACRRMVSGTLSLPYYGCFSPFPHGTRSLSV 130          
BLAST of mRNA_H-canaliculatus_F_contig13820.3037.1 vs. uniprot
Match: E6PDN8_9ZZZZ (Uncharacterized protein n=1 Tax=mine drainage metagenome TaxID=410659 RepID=E6PDN8_9ZZZZ)

HSP 1 Score: 85.1 bits (209), Expect = 4.820e-18
Identity = 56/126 (44.44%), Postives = 65/126 (51.59%), Query Frame = 2
Query:    2 V*LAFHP*AQFIPTFFNRCGFGPPVSVT*PSS*SCLDHSVSGLIHLTHSPY*DSLSLRLHLTA*AC*I-DQVRCHPSRGLQLFVGDRFQKLFHSP---CR------------GAFHLSLTVLVHYR 331
            V LAFHP  Q I  FFN   FGPP  +   S+   +DH VSGL+  T+SPY DSLSLRL L      +    + H S      +G R   L H P   CR            G+FHLSLTVLVHYR
Sbjct:  103 VRLAFHPYPQLIQRFFNNDRFGPPHEINHASTWPWIDHPVSGLLQRTNSPYSDSLSLRLRLNTLTKPVTSNSQVHSS------IGTRLALLAHWPFTVCRHTVSYSISLPFGGSFHLSLTVLVHYR 222          
BLAST of mRNA_H-canaliculatus_F_contig13820.3037.1 vs. uniprot
Match: A0A0K2VL77_LEPSM (Uncharacterized protein n=1 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2VL77_LEPSM)

HSP 1 Score: 79.7 bits (195), Expect = 8.200e-18
Identity = 39/43 (90.70%), Postives = 42/43 (97.67%), Query Frame = -2
Query:   84 LGLSSKLKPLGVGAAKASLNRANELDGSDPKPSDLGMIRMKVR 212
            LGL+SKLKPLGVGAAKASLNRANEL GSDPKPSDLGMIR+KV+
Sbjct:    5 LGLTSKLKPLGVGAAKASLNRANELVGSDPKPSDLGMIRLKVQ 47          
BLAST of mRNA_H-canaliculatus_F_contig13820.3037.1 vs. uniprot
Match: UPI001A08AA19 (Uncharacterized protein n=1 Tax=Pseudorhizobium halotolerans TaxID=1233081 RepID=UPI001A08AA19)

HSP 1 Score: 80.1 bits (196), Expect = 5.300e-16
Identity = 51/99 (51.52%), Postives = 60/99 (60.61%), Query Frame = 1
Query:   61 VRTSS*CYLTFILIMPRSLGFGSDPSNSFALLRLAFAAPTPNGLSLLDRPSTL--------SPLKGAPTVCRRPVSETVSLPLSGCFSPFPHGTGSLSV 333
            VR SS CY TF L+M RSLGFGS+ +     ++  F       L L     +L        SPL+ APTVCR PVS ++SLP SGCFSPFPHGT SLSV
Sbjct:    3 VRPSSWCYPTFSLLMARSLGFGSNATYYGRPVQTRFRYAYTYRLKLACYTKSLTHYTKGTPSPLR-APTVCRHPVSGSISLPSSGCFSPFPHGTCSLSV 100          
BLAST of mRNA_H-canaliculatus_F_contig13820.3037.1 vs. uniprot
Match: A0A2S2PQL9_SCHGA (Uncharacterized protein (Fragment) n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2PQL9_SCHGA)

HSP 1 Score: 77.8 bits (190), Expect = 2.010e-15
Identity = 37/40 (92.50%), Postives = 37/40 (92.50%), Query Frame = 1
Query:  214 TLSPLKGAPTVCRRPVSETVSLPLSGCFSPFPHGTGSLSV 333
            T SPLKGAPT CRRPVSETVSLP SGCFSPFPHGTGSLSV
Sbjct:   17 TPSPLKGAPTACRRPVSETVSLPSSGCFSPFPHGTGSLSV 56          
BLAST of mRNA_H-canaliculatus_F_contig13820.3037.1 vs. uniprot
Match: Q1YII1_AURMS (Uncharacterized protein n=1 Tax=Aurantimonas manganoxydans (strain ATCC BAA-1229 / DSM 21871 / SI85-9A1) TaxID=287752 RepID=Q1YII1_AURMS)

HSP 1 Score: 73.6 bits (179), Expect = 8.400e-15
Identity = 49/95 (51.58%), Postives = 55/95 (57.89%), Query Frame = 2
Query:   74 VSVT*PSS*SCLDHSVSGLIHLTHSP------Y*DSLSLRL-HLTA*AC*IDQVRCHPSRGLQL--FVGDRFQKLFHSPCRGAFHLSLTVLVHYR 331
            + VT PS+ S LDHSVSGLI  T  P      Y  +  L+L   T       +    P   L+L  FVG RFQ LFHSPCRGAFHLSLTVLV YR
Sbjct:    1 MRVTAPSTCSWLDHSVSGLIRRTERPVQTRFRYASTYRLKLARQTKSLTHYTKGTMSPRTNLELHLFVGIRFQVLFHSPCRGAFHLSLTVLVRYR 95          
BLAST of mRNA_H-canaliculatus_F_contig13820.3037.1 vs. uniprot
Match: A0A4Y3MCV7_9PROT (Uncharacterized protein n=1 Tax=Gluconobacter roseus NBRC 3990 TaxID=1307950 RepID=A0A4Y3MCV7_9PROT)

HSP 1 Score: 64.3 bits (155), Expect = 9.600e-12
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = -2
Query:   84 SKLKPLGVGAAKASLNRANELDGSDPKPSDLGMIRMKVR 200
            S+LKPLGVG AKASLNRANEL   DPKPSDL M R+KVR
Sbjct:    9 SELKPLGVGVAKASLNRANELLAEDPKPSDLAMARLKVR 47          
BLAST of mRNA_H-canaliculatus_F_contig13820.3037.1 vs. uniprot
Match: K8EDY4_CARML (Uncharacterized protein n=1 Tax=Carnobacterium maltaromaticum LMA28 TaxID=1234679 RepID=K8EDY4_CARML)

HSP 1 Score: 65.9 bits (159), Expect = 1.120e-11
Identity = 35/61 (57.38%), Postives = 39/61 (63.93%), Query Frame = 2
Query:    2 V*LAFHP*AQFIPTFFNRCGFGPPVSVT*PSS*SCLDHSVSGLIHLTHSPY*DSLSLRLHL 184
            V L F      IP FFN  GFGPPV +T PS+ + + H VSGL   THSPY DSLSLRL L
Sbjct:   21 VRLEFLRYPHLIPAFFNIRGFGPPVRITAPSTWTWVGHLVSGLRPHTHSPYSDSLSLRLRL 81          
BLAST of mRNA_H-canaliculatus_F_contig13820.3037.1 vs. uniprot
Match: H6SIC1_PARPM (Uncharacterized protein (Fragment) n=1 Tax=Pararhodospirillum photometricum DSM 122 TaxID=1150469 RepID=H6SIC1_PARPM)

HSP 1 Score: 65.5 bits (158), Expect = 1.380e-11
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 1
Query:  229 KGAPTVCRRPVSETVSLPLSGCFSPFPHGTGSLSV 333
            +GAPT CR PVS TVSLP SGCFSPFPHGTGSLSV
Sbjct:   14 EGAPTACRHPVSGTVSLPSSGCFSPFPHGTGSLSV 48          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13820.3037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H6SIC8_PARPM2.490e-2451.75Uncharacterized protein (Fragment) n=1 Tax=Pararho... [more]
A0A132GPZ6_9BACT8.470e-2150.83Uncharacterized protein n=2 Tax=bacterium P201 Tax... [more]
E6PDN8_9ZZZZ4.820e-1844.44Uncharacterized protein n=1 Tax=mine drainage meta... [more]
A0A0K2VL77_LEPSM8.200e-1890.70Uncharacterized protein n=1 Tax=Lepeophtheirus sal... [more]
UPI001A08AA195.300e-1651.52Uncharacterized protein n=1 Tax=Pseudorhizobium ha... [more]
A0A2S2PQL9_SCHGA2.010e-1592.50Uncharacterized protein (Fragment) n=1 Tax=Schizap... [more]
Q1YII1_AURMS8.400e-1551.58Uncharacterized protein n=1 Tax=Aurantimonas manga... [more]
A0A4Y3MCV7_9PROT9.600e-1279.49Uncharacterized protein n=1 Tax=Gluconobacter rose... [more]
K8EDY4_CARML1.120e-1157.38Uncharacterized protein n=1 Tax=Carnobacterium mal... [more]
H6SIC1_PARPM1.380e-1185.71Uncharacterized protein (Fragment) n=1 Tax=Pararho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13820contigH-canaliculatus_F_contig13820:1466..1821 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score67.8
Seed ortholog evalue2.6e-09
Seed eggNOG ortholog1430440.MGMSRv2_1983
EggNOG OGs1NARM@1224,2DNPH@1,2UJNP@28211,32YF1@2
Best tax levelAlphaproteobacteria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size334
Cds size231
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13820.3037.1prot_H-canaliculatus_F_contig13820.3037.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13820 1466..1719 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929123.7838993-CDS-H-canaliculatus_F_contig13820:1465..15871622929123.7838993-CDS-H-canaliculatus_F_contig13820:1465..1587Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13820 1466..1587 -
1696845687.3755317-CDS-H-canaliculatus_F_contig13820:1465..15871696845687.3755317-CDS-H-canaliculatus_F_contig13820:1465..1587Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13820 1466..1587 -
1622929123.8000069-CDS-H-canaliculatus_F_contig13820:1610..17191622929123.8000069-CDS-H-canaliculatus_F_contig13820:1610..1719Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13820 1611..1719 -
1696845687.3949893-CDS-H-canaliculatus_F_contig13820:1610..17191696845687.3949893-CDS-H-canaliculatus_F_contig13820:1610..1719Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13820 1611..1719 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929123.810817-UTR-H-canaliculatus_F_contig13820:1719..18211622929123.810817-UTR-H-canaliculatus_F_contig13820:1719..1821Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13820 1720..1821 -
1696845687.4058647-UTR-H-canaliculatus_F_contig13820:1719..18211696845687.4058647-UTR-H-canaliculatus_F_contig13820:1719..1821Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13820 1720..1821 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13820.3037.1

>prot_H-canaliculatus_F_contig13820.3037.1 ID=prot_H-canaliculatus_F_contig13820.3037.1|Name=mRNA_H-canaliculatus_F_contig13820.3037.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=77bp
MPRSLGFGSDPSNSFALLRLAFAAPTPNGLSLLDRPSTLSPLKGAPTVCR
RPVSETVSLPLSGCFSPFPHGTGSLSV
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mRNA from alignment at H-canaliculatus_F_contig13820:1466..1821-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13820.3037.1 ID=mRNA_H-canaliculatus_F_contig13820.3037.1|Name=mRNA_H-canaliculatus_F_contig13820.3037.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=356bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13820:1466..1821- (Hapterophycus canaliculatus Oshoro5f female)
AGTTTGATTGGCCTTTCACCCCTAGGCACAATTCATCCCGACCTTTTTCA ACAGGTGTGGGTTCGGACCTCCAGTTAGTGTTACCTAACCTTCATCCTGA TCATGCCTAGATCACTCGGTTTCGGGTCTGATCCATCTAACTCATTCGCC CTATTAAGACTCGCTTTCGCTGCGCCTACACCTAACGGCTTAAGCTTGCT AGATAGACCAAGTCGATGACCCATTATACAAAAGGTACGCTGTCACCCCT CAAGGGGGCTCCAACTGTTTGTAGGCGACCGGTTTCAGAAACTGTTTCAC TCCCCTTGTCGGGGTGCTTTTCACCTTTCCCTCACGGTACTGGTTCACTA TCGGTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13820:1466..1821-

>mRNA_H-canaliculatus_F_contig13820.3037.1 ID=mRNA_H-canaliculatus_F_contig13820.3037.1|Name=mRNA_H-canaliculatus_F_contig13820.3037.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=462bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13820:1466..1821- (Hapterophycus canaliculatus Oshoro5f female)
ATGCCTAGATCACTCGGTTTCGGGTCTGATCCATCTAACTCATTCGCCCT
ATTAAGACTCGCTTTCGCTGCGCCTACACCTAACGGCTTAAGCTTGCTAG
ATAGACCAAATGCCTAGATCACTCGGTTTCGGGTCTGATCCATCTAACTC
ATTCGCCCTATTAAGACTCGCTTTCGCTGCGCCTACACCTAACGGCTTAA
GCTTGCTAGATAGACCAAGTACGCTGTCACCCCTCAAGGGGGCTCCAACT
GTTTGTAGGCGACCGGTTTCAGAAACTGTTTCACTCCCCTTGTCGGGGTG
CTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCGTACGCTGTC
ACCCCTCAAGGGGGCTCCAACTGTTTGTAGGCGACCGGTTTCAGAAACTG
TTTCACTCCCCTTGTCGGGGTGCTTTTCACCTTTCCCTCACGGTACTGGT
TCACTATCGGTC
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