mRNA_H-canaliculatus_F_contig13817.3033.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13817.3033.1
Unique NamemRNA_H-canaliculatus_F_contig13817.3033.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13817.3033.1 vs. uniprot
Match: D7G335_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G335_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 5.280e-30
Identity = 54/66 (81.82%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:   61 FAALKAHPFFRGLEFVGDGQPLPPSVTVPKLYELCIRAVAHHMVDYADSTPLVRNPFPAHADLHRL 258
            F ALK HPFFRGLEFVGDGQPLPPSVTVPKLYELC+RA+AHHMVDYA+ TPL+R PFP H D+ RL
Sbjct:  527 FEALKGHPFFRGLEFVGDGQPLPPSVTVPKLYELCVRALAHHMVDYAEFTPLIREPFPDHVDIKRL 592
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13817.3033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G335_ECTSI5.280e-3081.82Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13817contigH-canaliculatus_F_contig13817:1601..2639 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.4
Seed ortholog evalue3.7e-26
Seed eggNOG ortholog2880.D7G335
KEGG rclassRC00438,RC00439,RC00603,RC00604
KEGG koko:K01623,ko:K06276,ko:K08282
KEGG ReactionR01068,R01070,R01829,R02568
KEGG Pathwayko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko01524,ko03320,ko04011,ko04068,ko04071,ko04140,ko04150,ko04151,ko04152,ko04210,ko04510,ko04660,ko04664,ko04722,ko04910,ko04919,ko04931,ko04960,ko05145,ko05160,ko05205,ko05213,ko05215,ko05223,ko05231,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map01524,map03320,map04011,map04068,map04071,map04140,map04150,map04151,map04152,map04210,map04510,map04660,map04664,map04722,map04910,map04919,map04931,map04960,map05145,map05160,map05205,map05213,map05215,map05223,map05231
KEGG ModuleM00001,M00003,M00165,M00167
EggNOG free text desc.3-phosphoinositide-dependent protein kinase activity
EggNOG OGsKOG0592@1,KOG0592@2759
EC2.7.11.1,4.1.2.13
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03036,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons3
Model size374
Cds size372
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13817.3033.1prot_H-canaliculatus_F_contig13817.3033.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13817 1603..2639 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929123.394323-CDS-H-canaliculatus_F_contig13817:1602..17531622929123.394323-CDS-H-canaliculatus_F_contig13817:1602..1753Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13817 1603..1753 -
1696845687.105349-CDS-H-canaliculatus_F_contig13817:1602..17531696845687.105349-CDS-H-canaliculatus_F_contig13817:1602..1753Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13817 1603..1753 -
1622929123.4058325-CDS-H-canaliculatus_F_contig13817:2212..23131622929123.4058325-CDS-H-canaliculatus_F_contig13817:2212..2313Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13817 2213..2313 -
1696845687.11689-CDS-H-canaliculatus_F_contig13817:2212..23131696845687.11689-CDS-H-canaliculatus_F_contig13817:2212..2313Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13817 2213..2313 -
1622929123.4179666-CDS-H-canaliculatus_F_contig13817:2519..26391622929123.4179666-CDS-H-canaliculatus_F_contig13817:2519..2639Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13817 2520..2639 -
1696845687.1265259-CDS-H-canaliculatus_F_contig13817:2519..26391696845687.1265259-CDS-H-canaliculatus_F_contig13817:2519..2639Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13817 2520..2639 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13817.3033.1

>prot_H-canaliculatus_F_contig13817.3033.1 ID=prot_H-canaliculatus_F_contig13817.3033.1|Name=mRNA_H-canaliculatus_F_contig13817.3033.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=124bp
GDATEGSGRRHGGEGGGGGGFAALKAHPFFRGLEFVGDGQPLPPSVTVPK
LYELCIRAVAHHMVDYADSTPLVRNPFPAHADLHRLNREVLYGGGGGGGD
DDGGGGSGGSGGGGDKKESCGGGQ
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mRNA from alignment at H-canaliculatus_F_contig13817:1601..2639-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13817.3033.1 ID=mRNA_H-canaliculatus_F_contig13817.3033.1|Name=mRNA_H-canaliculatus_F_contig13817.3033.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1039bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13817:1601..2639- (Hapterophycus canaliculatus Oshoro5f female)
GGGGACGCTACGGAGGGAAGTGGGAGGCGTCATGGAGGCGAGGGCGGCGG
TGGCGGCGGGTTCGCGGCGCTGAAGGCGCACCCTTTCTTTCGGGGGCTGG
AGTTTGTCGGCGACGGACAGGTAGCGGGGTGACGGGTCGAGCGTTGTTGC
TGGTGCTGGTGCCGGTGTTGTCGTTGTTCTCGTTTCTGCCGCTGCAGCGG
CTGTTGTCGTCTGCGTTGCCACTGTCGTCCCTGCTGTTGTCCTCTGTCTG
CTGCCTGTTGTTTACTTTGCTCTTCCGTCCCCACCCCCACCCATTTTTTC
CGAACGCACGGAACCCCCCTCCGCAGCCTTTGCCGCCTTCAGTGACGGTC
CCCAAGCTGTACGAGCTGTGCATCCGCGCGGTCGCCCACCACATGGTGGA
CTACGCCGACTCCACCCCTCTCGTGAGGTGCGTGCTGCGTGCTGCGTGCT
GCGTGCTGCGTGCTGCGTGCTGCGTGCTGATTGATGCCCGTATCCTTGAA
GCGCATGTCGGGCGGCCAACACGTGTGCATGGGCCCGGCCACATCTCAGG
CCGATCGGTAAAAATTTCGGCAGGCTCAACACGTTTGATGCGTTTCGGGC
CCCGAGTTGTCGGGGTTGTTTTTTGTTTCGTGGAGTCTCCGGCTCAGGCT
TATCCGTAGACGGGCCTTCGTGGCGGCCGTTGCCTGCCTGCTCGCCGGCC
TGCCTGGCGATAACCTCGCTTGGACAGAGGATGCCGACGTGCCCTGCCCC
CAAGCGCCATCGTGTCTAGACATGCGAGAGACCCCACGCGCTCGAAGGCC
CCCGCCATCCCTCTCCCCCCCTCGGCGACGGGGATTGCTGACGCTCACCG
CGAACCCGTGCAACCCCTCCCCACTACGACCCGCAGGAATCCATTCCCAG
CACACGCAGACCTGCATCGTCTAAACCGCGAGGTGCTATACGGTGGTGGT
GGTGGTGGTGGTGATGATGATGGCGGCGGCGGAAGCGGCGGAAGCGGTGG
TGGTGGTGACAAAAAGGAAAGCTGTGGGGGGGGACAGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13817:1601..2639-

>mRNA_H-canaliculatus_F_contig13817.3033.1 ID=mRNA_H-canaliculatus_F_contig13817.3033.1|Name=mRNA_H-canaliculatus_F_contig13817.3033.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=744bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13817:1601..2639- (Hapterophycus canaliculatus Oshoro5f female)
GGGGACGCTACGGAGGGAAGTGGGAGGCGTCATGGAGGCGAGGGCGGCGG
TGGCGGCGGGTTCGCGGCGCTGAAGGCGCACCCTTTCTTTCGGGGGCTGG
AGTTTGTCGGCGACGGACAGGGGGACGCTACGGAGGGAAGTGGGAGGCGT
CATGGAGGCGAGGGCGGCGGTGGCGGCGGGTTCGCGGCGCTGAAGGCGCA
CCCTTTCTTTCGGGGGCTGGAGTTTGTCGGCGACGGACAGCCTTTGCCGC
CTTCAGTGACGGTCCCCAAGCTGTACGAGCTGTGCATCCGCGCGGTCGCC
CACCACATGGTGGACTACGCCGACTCCACCCCTCTCGTGAGCCTTTGCCG
CCTTCAGTGACGGTCCCCAAGCTGTACGAGCTGTGCATCCGCGCGGTCGC
CCACCACATGGTGGACTACGCCGACTCCACCCCTCTCGTGAGGAATCCAT
TCCCAGCACACGCAGACCTGCATCGTCTAAACCGCGAGGTGCTATACGGT
GGTGGTGGTGGTGGTGGTGATGATGATGGCGGCGGCGGAAGCGGCGGAAG
CGGTGGTGGTGGTGACAAAAAGGAAAGCTGTGGGGGGGGACAGGAATCCA
TTCCCAGCACACGCAGACCTGCATCGTCTAAACCGCGAGGTGCTATACGG
TGGTGGTGGTGGTGGTGGTGATGATGATGGCGGCGGCGGAAGCGGCGGAA
GCGGTGGTGGTGGTGACAAAAAGGAAAGCTGTGGGGGGGGACAG
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