mRNA_H-canaliculatus_F_contig13811.3032.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13811.3032.1
Unique NamemRNA_H-canaliculatus_F_contig13811.3032.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13811.3032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13811contigH-canaliculatus_F_contig13811:16..380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size366
Cds size300
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929123.3332756-UTR-H-canaliculatus_F_contig13811:15..801622929123.3332756-UTR-H-canaliculatus_F_contig13811:15..80Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13811 16..80 +
1696845687.0845802-UTR-H-canaliculatus_F_contig13811:15..801696845687.0845802-UTR-H-canaliculatus_F_contig13811:15..80Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13811 16..80 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929123.3502386-CDS-H-canaliculatus_F_contig13811:80..3801622929123.3502386-CDS-H-canaliculatus_F_contig13811:80..380Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13811 81..380 +
1696845687.0960138-CDS-H-canaliculatus_F_contig13811:80..3801696845687.0960138-CDS-H-canaliculatus_F_contig13811:80..380Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13811 81..380 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13811.3032.1prot_H-canaliculatus_F_contig13811.3032.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13811 81..380 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13811.3032.1

>prot_H-canaliculatus_F_contig13811.3032.1 ID=prot_H-canaliculatus_F_contig13811.3032.1|Name=mRNA_H-canaliculatus_F_contig13811.3032.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=100bp
MHLCRFVRDRCSFYCCASLTIGMCANTRFALPSRFCRLIDLRLARGASRT
SSFSLCRILIFRASARTVTETTGDHDESARVWEHVTLVPTPMCHRAARVG
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mRNA from alignment at H-canaliculatus_F_contig13811:16..380+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13811.3032.1 ID=mRNA_H-canaliculatus_F_contig13811.3032.1|Name=mRNA_H-canaliculatus_F_contig13811.3032.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=365bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13811:16..380+ (Hapterophycus canaliculatus Oshoro5f female)
GGGACAACATCTGAAGTGAGGAGACGATTCGTGGGTGCAGCCACCGCGTG
TACCTTGTACATACGATGCACCTGTGCCGTTTTGTTCGCGACAGATGCTC
CTTTTACTGCTGTGCATCGCTCACGATAGGGATGTGCGCAAACACACGTT
TCGCACTGCCGTCGCGGTTCTGTCGTCTAATTGACCTTCGACTCGCACGA
GGAGCGTCAAGGACGTCTTCATTTTCTTTGTGTCGAATCTTAATCTTCCG
AGCAAGCGCTCGCACGGTCACCGAGACTACCGGAGACCACGATGAGTCCG
CTCGGGTGTGGGAGCACGTCACCCTGGTGCCTACACCCATGTGCCACCGC
GCCGCGAGGGTTGGT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13811:16..380+

>mRNA_H-canaliculatus_F_contig13811.3032.1 ID=mRNA_H-canaliculatus_F_contig13811.3032.1|Name=mRNA_H-canaliculatus_F_contig13811.3032.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=600bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13811:16..380+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCACCTGTGCCGTTTTGTTCGCGACAGATGCTCCTTTTACTGCTGTGC
ATCGCTCACGATAGGGATGTGCGCAAACACACGTTTCGCACTGCCGTCGC
GGTTCTGTCGTCTAATTGACCTTCGACTCGCACGAGGAGCGTCAAGGACG
TCTTCATTTTCTTTGTGTCGAATCTTAATCTTCCGAGCAAGCGCTCGCAC
GGTCACCGAGACTACCGGAGACCACGATGAGTCCGCTCGGGTGTGGGAGC
ACGTCACCCTGGTGCCTACACCCATGTGCCACCGCGCCGCGAGGGTTGGT
ATGCACCTGTGCCGTTTTGTTCGCGACAGATGCTCCTTTTACTGCTGTGC
ATCGCTCACGATAGGGATGTGCGCAAACACACGTTTCGCACTGCCGTCGC
GGTTCTGTCGTCTAATTGACCTTCGACTCGCACGAGGAGCGTCAAGGACG
TCTTCATTTTCTTTGTGTCGAATCTTAATCTTCCGAGCAAGCGCTCGCAC
GGTCACCGAGACTACCGGAGACCACGATGAGTCCGCTCGGGTGTGGGAGC
ACGTCACCCTGGTGCCTACACCCATGTGCCACCGCGCCGCGAGGGTTGGT
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