prot_H-canaliculatus_F_contig13805.3028.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig13805.3028.1
Unique Nameprot_H-canaliculatus_F_contig13805.3028.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length74
Homology
BLAST of mRNA_H-canaliculatus_F_contig13805.3028.1 vs. uniprot
Match: D7FXG5_ECTSI (Arginine/serine-rich splicing factor 6 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXG5_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 3.670e-29
Identity = 52/56 (92.86%), Postives = 55/56 (98.21%), Query Frame = 0
Query:    1 LQDFGRQAGQVLYSDVFFRQGRRWGVIEYVSRDDMKNAIRSLDDTRLGGKYIRVRE 56
            L+DFGRQAGQVLYSDVFFRQGRRWGV+EYVSRDDMK AIR+LDDTRLGGKYIRVRE
Sbjct:  104 LKDFGRQAGQVLYSDVFFRQGRRWGVVEYVSRDDMKAAIRTLDDTRLGGKYIRVRE 159          
BLAST of mRNA_H-canaliculatus_F_contig13805.3028.1 vs. uniprot
Match: A0A1Y1ITP1_KLENI (RNA-binding protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1ITP1_KLENI)

HSP 1 Score: 65.9 bits (159), Expect = 4.360e-11
Identity = 30/55 (54.55%), Postives = 41/55 (74.55%), Query Frame = 0
Query:    1 LQDFGRQAGQVLYSDVFFRQGRRWGVIEYVSRDDMKNAIRSLDDTRLGGKYIRVR 55
            L+DFGR+AG V Y+DVF  +G+  GVIEY SR+D++NA+R LD  RL G  + +R
Sbjct:  131 LKDFGREAGAVAYADVFRDRGKIQGVIEYQSREDVRNAVRKLDGVRLQGNTVYLR 185          
BLAST of mRNA_H-canaliculatus_F_contig13805.3028.1 vs. uniprot
Match: A0A7S0N5W6_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0N5W6_9CRYP)

HSP 1 Score: 57.8 bits (138), Expect = 1.120e-8
Identity = 27/58 (46.55%), Postives = 40/58 (68.97%), Query Frame = 0
Query:    1 LQDFGRQAGQVLYSDVFFRQGRRWGVIEYVSRDDMKNAIRSLDDTRLGGKYIRVREVR 58
            L+DF R+AG  +++DVF  +G + GV+EY +RDD+  A+RSLD   L  + +RV E R
Sbjct:   85 LKDFARRAGHPVFTDVFHDRGGKVGVVEYKNRDDVYEAVRSLDGAVLHDRRVRVVEDR 142          
BLAST of mRNA_H-canaliculatus_F_contig13805.3028.1 vs. uniprot
Match: UPI001403F0A1 (serine/arginine-rich splicing factor 9 n=1 Tax=Petromyzon marinus TaxID=7757 RepID=UPI001403F0A1)

HSP 1 Score: 58.5 bits (140), Expect = 1.570e-8
Identity = 32/68 (47.06%), Postives = 41/68 (60.29%), Query Frame = 0
Query:    1 LQDFGRQAGQVLYSDVFFRQGRRWGVIEYVSRDDMKNAIRSLDDTRLGGKYIRVREVRRPVDGGTVPS 68
            L+D  R+AG V Y+DVF R G   GV+EYV ++DMK A+R LDDT+          V   +DGG  PS
Sbjct:  130 LKDHMREAGDVCYADVF-RDGT--GVVEYVRKEDMKYAVRKLDDTKFKSHEGETSYVHVRIDGGRSPS 194          
BLAST of mRNA_H-canaliculatus_F_contig13805.3028.1 vs. uniprot
Match: UPI000A29E2EC (serine/arginine-rich splicing factor SR30 isoform X2 n=3 Tax=Camelineae TaxID=980083 RepID=UPI000A29E2EC)

HSP 1 Score: 57.8 bits (138), Expect = 3.850e-8
Identity = 31/60 (51.67%), Postives = 39/60 (65.00%), Query Frame = 0
Query:    1 LQDFGRQAGQVLYSDVFFRQGRRWGVIEYVSRDDMKNAIRSLDDTRLGGK----YIRVRE 56
            L+D  R+AG V +S+VF  +GR  GV++Y + DDMK AIR LDDT         YIRVRE
Sbjct:  125 LKDHMRKAGDVCFSEVFRDRGRMSGVVDYSNYDDMKYAIRKLDDTEFRNAFSRAYIRVRE 184          
BLAST of mRNA_H-canaliculatus_F_contig13805.3028.1 vs. uniprot
Match: A0A067H5H6_CITSI (Uncharacterized protein n=2 Tax=rosids TaxID=71275 RepID=A0A067H5H6_CITSI)

HSP 1 Score: 57.0 bits (136), Expect = 5.600e-8
Identity = 30/73 (41.10%), Postives = 41/73 (56.16%), Query Frame = 0
Query:    1 LQDFGRQAGQVLYSDVFFRQGRRWGVIEYVSRDDMKNAIRSLDDTRLGGK----YIRVREVRRPVDGGTVPSR 69
            L+D  R+AG V +S VF       G+++Y + DDMK+AI+ LDD+         Y+RVRE     DG   PSR
Sbjct:  125 LKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDHRRDGSQSPSR 197          
BLAST of mRNA_H-canaliculatus_F_contig13805.3028.1 vs. uniprot
Match: A0A0A9B5H3_ARUDO (Pre-mRNA-splicing factor SF2 n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9B5H3_ARUDO)

HSP 1 Score: 55.1 bits (131), Expect = 6.740e-8
Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = 0
Query:    1 LQDFGRQAGQVLYSDVFFRQGRRWGVIEYVSRDDMKNAIRSLDDTRLGGK----YIRVRE 56
            L+D  R+AG V +SDV+   G   G+++Y + DDMK AIR LDD++        Y+RVRE
Sbjct:   14 LKDHMRRAGDVCFSDVYREAGETIGIVDYTNYDDMKYAIRKLDDSQFRNAFSRVYVRVRE 73          
BLAST of mRNA_H-canaliculatus_F_contig13805.3028.1 vs. uniprot
Match: A0A067HGT2_CITSI (Uncharacterized protein n=2 Tax=Sapindales TaxID=41937 RepID=A0A067HGT2_CITSI)

HSP 1 Score: 57.0 bits (136), Expect = 7.820e-8
Identity = 30/73 (41.10%), Postives = 41/73 (56.16%), Query Frame = 0
Query:    1 LQDFGRQAGQVLYSDVFFRQGRRWGVIEYVSRDDMKNAIRSLDDTRLGGK----YIRVREVRRPVDGGTVPSR 69
            L+D  R+AG V +S VF       G+++Y + DDMK+AI+ LDD+         Y+RVRE     DG   PSR
Sbjct:  124 LKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDHRRDGSQSPSR 196          
BLAST of mRNA_H-canaliculatus_F_contig13805.3028.1 vs. uniprot
Match: V4U0M2_CITCL (Uncharacterized protein n=2 Tax=Citrus TaxID=2706 RepID=V4U0M2_CITCL)

HSP 1 Score: 57.0 bits (136), Expect = 7.860e-8
Identity = 30/73 (41.10%), Postives = 41/73 (56.16%), Query Frame = 0
Query:    1 LQDFGRQAGQVLYSDVFFRQGRRWGVIEYVSRDDMKNAIRSLDDTRLGGK----YIRVREVRRPVDGGTVPSR 69
            L+D  R+AG V +S VF       G+++Y + DDMK+AI+ LDD+         Y+RVRE     DG   PSR
Sbjct:  125 LKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDHRRDGSQSPSR 197          
BLAST of mRNA_H-canaliculatus_F_contig13805.3028.1 vs. uniprot
Match: V4TB61_CITCL (Uncharacterized protein n=12 Tax=Sapindales TaxID=41937 RepID=V4TB61_CITCL)

HSP 1 Score: 57.0 bits (136), Expect = 8.530e-8
Identity = 30/73 (41.10%), Postives = 41/73 (56.16%), Query Frame = 0
Query:    1 LQDFGRQAGQVLYSDVFFRQGRRWGVIEYVSRDDMKNAIRSLDDTRLGGK----YIRVREVRRPVDGGTVPSR 69
            L+D  R+AG V +S VF       G+++Y + DDMK+AI+ LDD+         Y+RVRE     DG   PSR
Sbjct:  125 LKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDHRRDGSQSPSR 197          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13805.3028.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXG5_ECTSI3.670e-2992.86Arginine/serine-rich splicing factor 6 n=2 Tax=Ect... [more]
A0A1Y1ITP1_KLENI4.360e-1154.55RNA-binding protein n=1 Tax=Klebsormidium nitens T... [more]
A0A7S0N5W6_9CRYP1.120e-846.55Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
UPI001403F0A11.570e-847.06serine/arginine-rich splicing factor 9 n=1 Tax=Pet... [more]
UPI000A29E2EC3.850e-851.67serine/arginine-rich splicing factor SR30 isoform ... [more]
A0A067H5H6_CITSI5.600e-841.10Uncharacterized protein n=2 Tax=rosids TaxID=71275... [more]
A0A0A9B5H3_ARUDO6.740e-845.00Pre-mRNA-splicing factor SF2 n=1 Tax=Arundo donax ... [more]
A0A067HGT2_CITSI7.820e-841.10Uncharacterized protein n=2 Tax=Sapindales TaxID=4... [more]
V4U0M2_CITCL7.860e-841.10Uncharacterized protein n=2 Tax=Citrus TaxID=2706 ... [more]
V4TB61_CITCL8.530e-841.10Uncharacterized protein n=12 Tax=Sapindales TaxID=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 4..53
e-value: 6.1E-6
score: 26.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 1..59
score: 8.655
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..58
e-value: 1.3E-10
score: 43.0
NoneNo IPR availablePANTHERPTHR23003:SF30SERINE/ARGININE-RICH-SPLICING FACTOR 5A-RELATEDcoord: 1..58
NoneNo IPR availablePANTHERPTHR23003RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEINcoord: 1..58
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 1..67

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13805contigH-canaliculatus_F_contig13805:1810..2435 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13805.3028.1mRNA_H-canaliculatus_F_contig13805.3028.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig13805 1810..2435 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig13805.3028.1 ID=prot_H-canaliculatus_F_contig13805.3028.1|Name=mRNA_H-canaliculatus_F_contig13805.3028.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=74bp
LQDFGRQAGQVLYSDVFFRQGRRWGVIEYVSRDDMKNAIRSLDDTRLGGK
YIRVREVRRPVDGGTVPSRFTEK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom