mRNA_H-canaliculatus_F_contig1379.3020.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1379.3020.1
Unique NamemRNA_H-canaliculatus_F_contig1379.3020.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1379.3020.1 vs. uniprot
Match: D8LSZ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSZ2_ECTSI)

HSP 1 Score: 214 bits (546), Expect = 1.340e-63
Identity = 141/264 (53.41%), Postives = 166/264 (62.88%), Query Frame = 1 
Query:  364 EGIGFEQMDVVHLLGLVCPDFPENIVTRASTTPVARILSEGSGHSHGSGRRPRGLQSPPEKSA-PRPSSPTS-AXXXXXXXXXXTPAVSGILESSHGRGSGSTPFAGSSSLAEATA-AEQIDFVKALPFDLFLRACNIFFCFQEFFEDVRALFSSMALGVD--------GGVRDTGDSKNAKARVAAREVNLRILLDQLQVMKAEPRNQLRYLDIRSTEAAVRRGGLGERATLSVFLACLLLHSDEVASSLLEKPVVDNYAARL 1122
            +G GFEQ DVVHL GLVC DFPE IV R     VARILSEGS          R ++SPP   A P PS+ +  +          +P   G+   ++ R    TP     + A A A  ++ D VK+LPF +FLRAC ++FCFQEFFED+  LF S+A   D         G R  G +K      AAREVNLRILLDQLQVMKAEPRN LRY+D+RSTE AVRRGGLGERATL  FLACLLLHSD+VAS+LLEKP +D Y  RL
Sbjct:   14 DGGGFEQKDVVHLFGLVCQDFPEEIVVR-----VARILSEGS----------RYVRSPPGTGASPIPSAKSEVSGAAAAAAAVASPTTVGVRSDNNCR---ITPSGADDAGAVADAPTQEADGVKSLPFAVFLRACIVYFCFQEFFEDIHTLFGSLAFRSDRRRSISSFAGGRGDGGTKER----AAREVNLRILLDQLQVMKAEPRNHLRYIDVRSTEEAVRRGGLGERATLPAFLACLLLHSDDVASALLEKPPMDGYTDRL 255
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1379.3020.1 vs. uniprot
Match: A0A7S3I0Q3_9SPIT (Centriolar satellite-associated tubulin polyglutamylase complex regulator 1 n=1 Tax=Favella ehrenbergii TaxID=182087 RepID=A0A7S3I0Q3_9SPIT)

HSP 1 Score: 84.0 bits (206), Expect = 2.820e-14
Identity = 47/143 (32.87%), Postives = 82/143 (57.34%), Query Frame = 1 
Query:   49 AVNSLADAAMDGIT--AQDFLENPELKVYVEDALRLVLAARPERPLEIINDYLQSVLDQENVVGREFAYVNATMRNRQAFVRAVHNVFVEPGHGVAVDGGPERRSLTEGIGFEQMDVVHLLGLVCPDFPEN-IVTRASTTPVA 468
            ++ S + AA D     AQ++LE  ++ +Y++DA++++L  R ERPL+++N+Y  + L  E+++ RE+A+V+AT  NR++F++ V  VF            P  + +T       +D   ++ LVC DFP N I+    T P A
Sbjct:   46 SIKSKSSAAKDRFNQRAQEYLETYKMSIYLQDAIKIILERRDERPLDLLNEYFNTTLRGEHILLREYAFVSATQLNRKSFLQQVKKVF---------HSTPHYKIITA------LDYHQMICLVCSDFPRNLIIETVKTLPTA 173
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1379.3020.1 vs. uniprot
Match: A0A7S3IWV1_9SPIT (Centriolar satellite-associated tubulin polyglutamylase complex regulator 1 (Fragment) n=1 Tax=Strombidium inclinatum TaxID=197538 RepID=A0A7S3IWV1_9SPIT)

HSP 1 Score: 79.3 bits (194), Expect = 3.200e-13
Identity = 39/128 (30.47%), Postives = 78/128 (60.94%), Query Frame = 1 
Query:   91 AQDFLENPELKVYVEDALRLVLAARPERPLEIINDYLQSVLDQENVVGREFAYVNATMRNRQAFVRAVHNVFVEPGHGVAVDGGPERRSLTEGIGFEQMDVVHLLGLVCPDFPENIVTRA-STTPVAR 471
            AQ++L++ ++ +Y++DA++++L  + E+PL+++ DY  + L  E+++ RE+A+V+AT  NR+ F++ +  VF            P   ++T G+ + QM     + L+C DFP N++     T P+A+
Sbjct:  101 AQEYLDSHKMSIYLQDAIKIILDRKEEKPLDLLTDYFNTTLKGEHILLREYAFVSATQLNRKCFLQQIRKVF---------HSTPYYHTIT-GLDYHQM-----ICLICSDFPRNLMIETIKTLPLAK 213
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1379.3020.1 vs. uniprot
Match: A0A7S3CUL5_9SPIT (Centriolar satellite-associated tubulin polyglutamylase complex regulator 1 (Fragment) n=1 Tax=Strombidium rassoulzadegani TaxID=1082188 RepID=A0A7S3CUL5_9SPIT)

HSP 1 Score: 77.4 bits (189), Expect = 1.760e-12
Identity = 39/128 (30.47%), Postives = 77/128 (60.16%), Query Frame = 1 
Query:   91 AQDFLENPELKVYVEDALRLVLAARPERPLEIINDYLQSVLDQENVVGREFAYVNATMRNRQAFVRAVHNVFVEPGHGVAVDGGPERRSLTEGIGFEQMDVVHLLGLVCPDFPENIVTRA-STTPVAR 471
            AQ++L++ ++ +Y++DA++++L  R E+PL+++ DY  + L  E+++ RE+A+V+AT  NR+ F++ +  VF            P  + +T G+ + QM     + L+C DFP  ++     T P+A+
Sbjct:  109 AQEYLDSHKMSIYLQDAIKIILDRREEKPLDLLTDYFNTTLKGEHILLREYAFVSATQLNRKCFLQQIRKVF---------HSTPYYQIIT-GLDYHQM-----ICLICSDFPRTLMIETIKTIPLAK 221
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1379.3020.1 vs. uniprot
Match: A0A7S3WTD8_9SPIT (Centriolar satellite-associated tubulin polyglutamylase complex regulator 1 n=2 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3WTD8_9SPIT)

HSP 1 Score: 76.6 bits (187), Expect = 5.070e-12
Identity = 42/119 (35.29%), Postives = 67/119 (56.30%), Query Frame = 1 
Query:   85 ITAQDFLENPELKVYVEDALRLVLAARPERPLEIINDYLQSVLDQENVVGREFAYVNATMRNRQAFVRAVHNVFVEPGHGVAVDGGPERRSLTEGIGFEQMDVVHLLGLVCPDFPENIV 441
            ++ Q+++E  +L +Y++D   L+L  R ERP+E I DY  S++   +V+ R+F YVNA+ RNR AFVR     F E          P    +T       +++ +LL ++CPDFP  +V
Sbjct:   18 LSPQEYMEKHDLLLYLQDVTSLLLQVRTERPIEFIADYFSSIMAGAHVIMRDFQYVNASERNRWAFVRLSLESFAE---------FPSDSPITS------IELANLLRMLCPDFPLELV 121
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1379.3020.1 vs. uniprot
Match: A0A7S3AR21_9EUKA (Centriolar satellite-associated tubulin polyglutamylase complex regulator 1 n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AR21_9EUKA)

HSP 1 Score: 75.9 bits (185), Expect = 9.090e-12
Identity = 43/121 (35.54%), Postives = 66/121 (54.55%), Query Frame = 1 
Query:   91 AQDFLENPELKVYVEDALRLVLAARPERPLEIINDYLQSVLDQENVVGREFAYVNATMRNRQAFVRAVHNVFVEPGHGVAVDGGPERRSLTEGIGFEQMDVVHLLGLVCPDFPENIVTRAS 453
            A ++LE   +  Y++D + L+L +R +RPLE I DY   VL  +NV+ R+F Y++ T  NR AF+ +  +VF E      +   PE              ++ LL L+CPDFPE +V  A+
Sbjct:    8 ATEYLERHSVPFYLQDVVSLLLQSRDDRPLEFIADYFTEVLSGKNVLCRDFEYISQTPANRWAFIVSARSVFAEFDTAQLLSA-PE--------------LLQLLRLICPDFPEQLVRNAT 113
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1379.3020.1 vs. uniprot
Match: A0A7S0M8G9_9CRYP (Centriolar satellite-associated tubulin polyglutamylase complex regulator 1 (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M8G9_9CRYP)

HSP 1 Score: 73.2 bits (178), Expect = 9.890e-12
Identity = 50/135 (37.04%), Postives = 74/135 (54.81%), Query Frame = 1 
Query:   85 ITAQDFLENPELKVYVEDALRLVLAARPERPLEIINDYLQSVLDQENVVGREFAYVNATMRNRQAFVRAVHNVFVEPGHGVAVDGGPERRSLTEGIGFEQMDVVHLLGLVCPDFPENIVTRASTTPVARILSEGS 489
            +T Q +L+   + +Y+EDA+ LVL  R +RPL+ I+ Y  SVL   +V+ REF+++NAT RNR AF+R    +FV+         GP+       I F+  D   L  ++CPDF +     A +T     L EGS
Sbjct:   13 LTPQQYLDRYHIPLYLEDAISLVLETRDDRPLDAIHKYFNSVLQGSHVLLREFSFINATPRNRLAFIR----LFVD----TYCSFGPD-----SAITFQ--DHWQLTTVLCPDFSQAFHNSALST-----LQEGS 127
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1379.3020.1 vs. uniprot
Match: A0A0L0HRW3_SPIPD (Centriolar satellite-associated tubulin polyglutamylase complex regulator 1 n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HRW3_SPIPD)

HSP 1 Score: 72.0 bits (175), Expect = 1.270e-10
Identity = 42/121 (34.71%), Postives = 66/121 (54.55%), Query Frame = 1 
Query:   88 TAQDFLENPELKVYVEDALRLVLAARPERPLEIINDYLQSVLDQENVVGREFAYVNATMRNRQAFVRAVHNVFVEPGHGVAVDGGPERRSLTEGIGFEQMDVVHLLGLVCPDFPENIVTRA 450
            +A+++LE   + VY+EDA+  +L  RPE+P + +++Y  SVL   N + RE+ YV AT +NR +FV            G  + G     + TE          HL+ L+CPDFP +++ RA
Sbjct:   13 SAREYLERHNISVYLEDAVCRLLDDRPEKPAKFLSEYFDSVLRGTNTLLREYEYVKATPQNRLSFVDRF---------GEVLKGRNASYTATE--------YHHLVELICPDFPYDVIARA 116
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1379.3020.1 vs. uniprot
Match: J9IS68_9SPIT (Centriolar satellite-associated tubulin polyglutamylase complex regulator 1 n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9IS68_9SPIT)

HSP 1 Score: 72.0 bits (175), Expect = 1.720e-10
Identity = 37/127 (29.13%), Postives = 71/127 (55.91%), Query Frame = 1 
Query:  103 LENPELKVYVEDALRLVLAARPERPLEIINDYLQSVLDQENVVGREFAYVNATMRNRQAFVRAVHNVFVEPGHGVAVDGGPERRSLTEGIGFEQMDVVHLLGLVCPDFPENI-VTRASTTPVARILS 480
            +E+ ++ +Y++DA++++L  R ++PL+++N+Y  + L  E+++ RE+A+V+AT  NR+ F++ V  VF    +   +                 +D   +L LVC DFP ++ V    T P+A   S
Sbjct:    1 MESHKMSIYLQDAIKIILDRREDKPLDLLNEYFNTTLKGEHILLREYAFVSATPLNRKCFLQQVKKVFHSTPYYKVISA---------------LDYHQMLCLVCSDFPRSLMVETVKTLPIAGATS 112
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1379.3020.1 vs. uniprot
Match: A0A1Y1Z716_9FUNG (Centriolar satellite-associated tubulin polyglutamylase complex regulator 1 n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y1Z716_9FUNG)

HSP 1 Score: 63.9 bits (154), Expect = 6.110e-8
Identity = 28/70 (40.00%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:   97 DFLENPELKVYVEDALRLVLAARPERPLEIINDYLQSVLDQENVVGREFAYVNATMRNRQAFVRAVHNVF 306
            D+LE  E+ VY +D +  +L  +PE+PL+I+N Y +SV +  NV+ RE+ Y+ +T RN+  F+   H  F
Sbjct:    2 DYLEKHEIPVYFQDIVTNLLIKKPEKPLQILNSYFESVANGTNVLLREYEYIISTKRNKAYFIHYFHESF 71
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1379.3020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LSZ2_ECTSI1.340e-6353.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3I0Q3_9SPIT2.820e-1432.87Centriolar satellite-associated tubulin polyglutam... [more]
A0A7S3IWV1_9SPIT3.200e-1330.47Centriolar satellite-associated tubulin polyglutam... [more]
A0A7S3CUL5_9SPIT1.760e-1230.47Centriolar satellite-associated tubulin polyglutam... [more]
A0A7S3WTD8_9SPIT5.070e-1235.29Centriolar satellite-associated tubulin polyglutam... [more]
A0A7S3AR21_9EUKA9.090e-1235.54Centriolar satellite-associated tubulin polyglutam... [more]
A0A7S0M8G9_9CRYP9.890e-1237.04Centriolar satellite-associated tubulin polyglutam... [more]
A0A0L0HRW3_SPIPD1.270e-1034.71Centriolar satellite-associated tubulin polyglutam... [more]
J9IS68_9SPIT1.720e-1029.13Centriolar satellite-associated tubulin polyglutam... [more]
A0A1Y1Z716_9FUNG6.110e-840.00Centriolar satellite-associated tubulin polyglutam... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1379contigH-canaliculatus_F_contig1379:21282..24787 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue1e-10
Seed eggNOG ortholog109760.SPPG_01532T1
Preferred nameC11orf49
KEGG koko:K16581
EggNOG OGs28JGI@1,2QRVN@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_001960.1
Exons7
Model size1140
Cds size1140
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929120.8223412-CDS-H-canaliculatus_F_contig1379:21281..214591622929120.8223412-CDS-H-canaliculatus_F_contig1379:21281..21459Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1379 21282..21459 -
1696845686.0735872-CDS-H-canaliculatus_F_contig1379:21281..214591696845686.0735872-CDS-H-canaliculatus_F_contig1379:21281..21459Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1379 21282..21459 -
1622929120.840935-CDS-H-canaliculatus_F_contig1379:21796..219751622929120.840935-CDS-H-canaliculatus_F_contig1379:21796..21975Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1379 21797..21975 -
1696845686.0891778-CDS-H-canaliculatus_F_contig1379:21796..219751696845686.0891778-CDS-H-canaliculatus_F_contig1379:21796..21975Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1379 21797..21975 -
1622929120.8561242-CDS-H-canaliculatus_F_contig1379:22324..226451622929120.8561242-CDS-H-canaliculatus_F_contig1379:22324..22645Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1379 22325..22645 -
1696845686.1004455-CDS-H-canaliculatus_F_contig1379:22324..226451696845686.1004455-CDS-H-canaliculatus_F_contig1379:22324..22645Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1379 22325..22645 -
1622929120.884294-CDS-H-canaliculatus_F_contig1379:22900..230621622929120.884294-CDS-H-canaliculatus_F_contig1379:22900..23062Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1379 22901..23062 -
1696845686.109628-CDS-H-canaliculatus_F_contig1379:22900..230621696845686.109628-CDS-H-canaliculatus_F_contig1379:22900..23062Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1379 22901..23062 -
1622929120.8990939-CDS-H-canaliculatus_F_contig1379:23442..235361622929120.8990939-CDS-H-canaliculatus_F_contig1379:23442..23536Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1379 23443..23536 -
1696845686.1193078-CDS-H-canaliculatus_F_contig1379:23442..235361696845686.1193078-CDS-H-canaliculatus_F_contig1379:23442..23536Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1379 23443..23536 -
1622929120.9266832-CDS-H-canaliculatus_F_contig1379:23724..238241622929120.9266832-CDS-H-canaliculatus_F_contig1379:23724..23824Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1379 23725..23824 -
1696845686.128999-CDS-H-canaliculatus_F_contig1379:23724..238241696845686.128999-CDS-H-canaliculatus_F_contig1379:23724..23824Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1379 23725..23824 -
1622929120.9471674-CDS-H-canaliculatus_F_contig1379:24681..247871622929120.9471674-CDS-H-canaliculatus_F_contig1379:24681..24787Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1379 24682..24787 -
1696845686.1391091-CDS-H-canaliculatus_F_contig1379:24681..247871696845686.1391091-CDS-H-canaliculatus_F_contig1379:24681..24787Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1379 24682..24787 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1379.3020.1prot_H-canaliculatus_F_contig1379.3020.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1379 21282..24787 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1379.3020.1

>prot_H-canaliculatus_F_contig1379.3020.1 ID=prot_H-canaliculatus_F_contig1379.3020.1|Name=mRNA_H-canaliculatus_F_contig1379.3020.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=380bp
MTWCVEPSDGPLGINVAVNSLADAAMDGITAQDFLENPELKVYVEDALRL
VLAARPERPLEIINDYLQSVLDQENVVGREFAYVNATMRNRQAFVRAVHN
VFVEPGHGVAVDGGPERRSLTEGIGFEQMDVVHLLGLVCPDFPENIVTRA
STTPVARILSEGSGHSHGSGRRPRGLQSPPEKSAPRPSSPTSAPAAPESA
SAATPAVSGILESSHGRGSGSTPFAGSSSLAEATAAEQIDFVKALPFDLF
LRACNIFFCFQEFFEDVRALFSSMALGVDGGVRDTGDSKNAKARVAAREV
NLRILLDQLQVMKAEPRNQLRYLDIRSTEAAVRRGGLGERATLSVFLACL
LLHSDEVASSLLEKPVVDNYAARLVSIEE*
back to top

mRNA from alignment at H-canaliculatus_F_contig1379:21282..24787-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1379.3020.1 ID=mRNA_H-canaliculatus_F_contig1379.3020.1|Name=mRNA_H-canaliculatus_F_contig1379.3020.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3506bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1379:21282..24787- (Hapterophycus canaliculatus Oshoro5f female)
ATGACTTGGTGCGTCGAACCTTCAGATGGGCCGTTGGGCATCAATGTCGC
CGTGAACTCCCTCGCAGATGCGGCCATGGACGGAATTACAGCTCAAGATT
TTCTAGGTGAACTTGAAACACTTCAGCCGTACAGTACGAGATCGAGATGT
ATTTGTATGTTACTTAAAAAAAAGAGTTGACGACACAAATGGAATACCCT
CCGCTGAGACGAATTGCAGCGACGCAGGGGAGTCATGGTAAATACCTTAC
AGTGAGCGTTTATTATGCATGGTTTTTGGTCTTCCCGAAAAAATCCAAAG
GGGTTTCCTGAGTCTCGGAGCATGACGGCCAATTTACAGTCATTTGACGG
CTCCCTAGTCTCCGCACGATGCGATTTTCGGTTGACCCCAGAACACGGAG
TCTGCACAGTAAGCCCTCTCAATACTTAAAAGTACGCTTCGATTTGGCTC
CAAGCAGTCTACTCCTGTCCACAGAGTACCAAGCCCGGTGCCAAGTCGTG
CGTGGAACATGTGCCCATTGTGCATGGAACATCAAGAGTGGTTTCACCAA
AATACTGCTTACATCCCCTCGTTGAGCAACAAGATTAGTACGCTGCATAC
ATTTCTGCAGTATTCCTTCATGGTCTACACAAGAAGCAGAGACTGGTAGC
AACGGAACAGCTGCATCAATCGCCAGTCTCGCAAATGTGTAGCATTTGTT
TCCAACAACGCATCATTTGACCTAATTATTCGAACTGTTTCAACAGTGCC
AAGAATGGTGAGCTGCTCATTTTCCCCGCACTCTAGAATGTAGATGCCGT
ATTTTGCTTAAAATACCTGTAGAATGCGTTTCGTAGTGTGCATTTTAAAA
TTGTGCTCAATCAACACAATGTACAGACTTTTTGACGTCGATAGGACTGA
TTCTGTGAGTCACGATCAAAGTGGAATTTTGTGTGGTATCCGTTACGTTC
GTACCTTTCTCAGAGAACCCCGAGCTCAAAGTCTACGTCGAGGACGCTTT
ACGGCTCGTTCTCGCTGCACGACCAGAGAGGCCCCTCGAAATCATCAACG
ATTACCTACAAAGGTATGGTGTCATTACATACGCACAGAAGACAAGAGCC
GCGTGTGGAATGTGCGTGGAGTGCGTAGAACGGCCAGAGCAGCTGCGTAT
ACTCAACGTGCGATGTGTGGCGATCAGCCAATCAGCTGCTGCTGACCCGC
AGAGTTGCGCCTGTCGCTTGGCTGTTGTTTCAAACACCAATTAATTACCA
GCGTGCTGGACCAGGAAAACGTGGTGGGGAGGGAGTTCGCCTACGTTAAC
GCTACGATGCGCAACCGCCAGGCGTTCGTCCGCGCTGTCCACAATGTGCG
GCGTTGCTCACAAAAATGAAGCTGTATCTTCAAATAGGATATATGCCGGA
GGACTCCTGAATTATATTTGTACGGTTCTAGAACAGTCCTAGCACACCAT
TTCCCGGCTCAAGCGCGAGATTAGCTACCTACAGGGCACGACGGACGTGG
CCTCTAGAGTTCAAAAATTCTTCGAGCACATGTATCACCGCTTGTTTCCG
ATTCTCCGTCTCCGCAACATCTTTGCCAAAGGTGTCTCATGCTTTTGGGT
TAGCGATTTTGCTCAACGCCTCCTTTGATGAGTAAATACAACCACATCCT
TCATACCCAGGAGTGAATAATCGTAGATGTAAATAGATGTAAACGTACGT
TCCCCAACTCCCCCGGAACAACCAGGTGTTTGTCGAACCCGGCCATGGCG
TAGCGGTTGACGGTGGCCCAGAGAGACGTTCGCTCACCGAAGGAATCGGG
TTCGAACAGATGGACGTCGTTCACTTGCTTGGGCTCGTTTGCCCGGACTT
CCCTGAGAATATCGTAACTCGAGCAAGTACAACTCCCGTAGATTTCAATC
GCCTGCCAGATTTTGCGAGGGGGTCACTGCATGCGACCGCACCCACACAT
GTGTGAATGAAATCTGCAGTGGCCGTGGGTTGATTCTTTGCGTGGTTACC
AACGCCTGACTACTGGTGGATGCACCCAATCGCCCCTTCAGCAATCAATG
CGCTCTTCTGAGGTACCCATGGTTGCTTAGCTTTACTTATATCTGATTGA
TGCTGAGCAAGGAGGTGATGGCATTATTCATGGCCCTATCAGGTGGCCAG
GATTCTGTCCGAGGGTTCGGGACACTCCCACGGCAGCGGTCGTCGTCCCA
GAGGCCTCCAAAGCCCTCCAGAGAAATCGGCGCCGCGGCCATCCTCACCG
ACCTCAGCACCAGCCGCACCAGAATCAGCGTCGGCAGCAACACCAGCAGT
TTCGGGAATCCTTGAGAGCAGCCACGGCAGAGGTTCTGGAAGCACACCGT
TTGCAGGTTCTTCCTCGCTCGCCGAAGCCACAGCCGCTGAGCAAATCGAT
TTCGTTAAAGCTCTGCCTTTCGACCTCTTCCTCCGCGCGTGCAACATCTT
CTTTTGTTTCCAGGTTGGTTGGTGCGCTGGGTACTCGAACCTGTAGACGC
TGGGGTCGTGTGGTTGTCCCATTGCGAACGGGGGCTGTGATACTCTATGG
GTGCCTTCCTGTACAAGGCGAAGGCCGAACGATTACCCCAACTACAGTCG
GGGGAGCAATGATGGGCACCCGTCTAGCGTACACACTCGCGTCTTGCGGC
AATTACACAGCGGACCTGTAGGGTTTCCATGACGTTGACTCCGCTCGTTT
TTCGCGTGCACGCAGGTGCGAGCTGAACGTCAGTCCCATGACTGAACTCC
GTCGCACGCCTCCATCCCTCCCCATCCGCCGCCTTCTTGGCTCACTGCAC
CTAATGCAACAGGAGTTTTTCGAAGACGTGCGTGCGCTCTTCAGCTCAAT
GGCTCTCGGGGTAGACGGCGGCGTAAGAGACACGGGAGACAGCAAGAACG
CCAAGGCGCGGGTCGCCGCGCGCGAGGTCAACCTCCGAATACTGCTGGAT
CAGCTCCAGGTCATGAAGGCGGAGCCGCGTAACCAACTCAGGTGTTCAAT
AATGCGATGTGCGTCTTCTGGCACGGCGCGTACCGTTGTGATTCGAGGAG
CTCGCAAATTTGCGGTCGACCCCCTTCTGCTCTGGGAAAATGTTCCATTT
GGTAGGAGAACGAGTTTCTTGACCGGTGGGGGGGGGAGTCTAATTGGAAT
ATCCGGGCTCTTTGACACATCCCAGCAGCTTTTGGTTTCAGCATACAGTA
GCTGTGTGAACCTCTGCGCGTGGGTTCGGAAATAGACATAAATAATCTCT
TACGATCAGGATGGACAAACGCCGTTTGCATGTTTTCCAAATCTCTGTGA
TACGAACCAACGGTCGCGCTACCCTCAGGTACTTGGACATAAGATCCACC
GAGGCGGCGGTACGTAGGGGAGGGCTAGGGGAGCGAGCGACGCTGTCGGT
GTTCTTGGCGTGCTTGCTGCTCCACTCGGACGAGGTGGCCTCGAGCCTCC
TGGAAAAGCCCGTCGTGGACAACTACGCCGCTCGTCTCGTGAGTATCGAG
GAGTGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1379:21282..24787-

>mRNA_H-canaliculatus_F_contig1379.3020.1 ID=mRNA_H-canaliculatus_F_contig1379.3020.1|Name=mRNA_H-canaliculatus_F_contig1379.3020.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2280bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1379:21282..24787- (Hapterophycus canaliculatus Oshoro5f female)
ATGACTTGGTGCGTCGAACCTTCAGATGGGCCGTTGGGCATCAATGTCGC
CGTGAACTCCCTCGCAGATGCGGCCATGGACGGAATTACAGCTCAAGATT
TTCTAGATGACTTGGTGCGTCGAACCTTCAGATGGGCCGTTGGGCATCAA
TGTCGCCGTGAACTCCCTCGCAGATGCGGCCATGGACGGAATTACAGCTC
AAGATTTTCTAGAGAACCCCGAGCTCAAAGTCTACGTCGAGGACGCTTTA
CGGCTCGTTCTCGCTGCACGACCAGAGAGGCCCCTCGAAATCATCAACGA
TTACCTACAAAGAGAACCCCGAGCTCAAAGTCTACGTCGAGGACGCTTTA
CGGCTCGTTCTCGCTGCACGACCAGAGAGGCCCCTCGAAATCATCAACGA
TTACCTACAAAGCGTGCTGGACCAGGAAAACGTGGTGGGGAGGGAGTTCG
CCTACGTTAACGCTACGATGCGCAACCGCCAGGCGTTCGTCCGCGCTGTC
CACAATCGTGCTGGACCAGGAAAACGTGGTGGGGAGGGAGTTCGCCTACG
TTAACGCTACGATGCGCAACCGCCAGGCGTTCGTCCGCGCTGTCCACAAT
GTGTTTGTCGAACCCGGCCATGGCGTAGCGGTTGACGGTGGCCCAGAGAG
ACGTTCGCTCACCGAAGGAATCGGGTTCGAACAGATGGACGTCGTTCACT
TGCTTGGGCTCGTTTGCCCGGACTTCCCTGAGAATATCGTAACTCGAGCA
AGTACAACTCCCGTGTTTGTCGAACCCGGCCATGGCGTAGCGGTTGACGG
TGGCCCAGAGAGACGTTCGCTCACCGAAGGAATCGGGTTCGAACAGATGG
ACGTCGTTCACTTGCTTGGGCTCGTTTGCCCGGACTTCCCTGAGAATATC
GTAACTCGAGCAAGTACAACTCCCGTGGCCAGGATTCTGTCCGAGGGTTC
GGGACACTCCCACGGCAGCGGTCGTCGTCCCAGAGGCCTCCAAAGCCCTC
CAGAGAAATCGGCGCCGCGGCCATCCTCACCGACCTCAGCACCAGCCGCA
CCAGAATCAGCGTCGGCAGCAACACCAGCAGTTTCGGGAATCCTTGAGAG
CAGCCACGGCAGAGGTTCTGGAAGCACACCGTTTGCAGGTTCTTCCTCGC
TCGCCGAAGCCACAGCCGCTGAGCAAATCGATTTCGTTAAAGCTCTGCCT
TTCGACCTCTTCCTCCGCGCGTGCAACATCTTCTTTTGTTTCCAGGTGGC
CAGGATTCTGTCCGAGGGTTCGGGACACTCCCACGGCAGCGGTCGTCGTC
CCAGAGGCCTCCAAAGCCCTCCAGAGAAATCGGCGCCGCGGCCATCCTCA
CCGACCTCAGCACCAGCCGCACCAGAATCAGCGTCGGCAGCAACACCAGC
AGTTTCGGGAATCCTTGAGAGCAGCCACGGCAGAGGTTCTGGAAGCACAC
CGTTTGCAGGTTCTTCCTCGCTCGCCGAAGCCACAGCCGCTGAGCAAATC
GATTTCGTTAAAGCTCTGCCTTTCGACCTCTTCCTCCGCGCGTGCAACAT
CTTCTTTTGTTTCCAGGAGTTTTTCGAAGACGTGCGTGCGCTCTTCAGCT
CAATGGCTCTCGGGGTAGACGGCGGCGTAAGAGACACGGGAGACAGCAAG
AACGCCAAGGCGCGGGTCGCCGCGCGCGAGGTCAACCTCCGAATACTGCT
GGATCAGCTCCAGGTCATGAAGGCGGAGCCGCGTAACCAACTCAGGAGTT
TTTCGAAGACGTGCGTGCGCTCTTCAGCTCAATGGCTCTCGGGGTAGACG
GCGGCGTAAGAGACACGGGAGACAGCAAGAACGCCAAGGCGCGGGTCGCC
GCGCGCGAGGTCAACCTCCGAATACTGCTGGATCAGCTCCAGGTCATGAA
GGCGGAGCCGCGTAACCAACTCAGGTACTTGGACATAAGATCCACCGAGG
CGGCGGTACGTAGGGGAGGGCTAGGGGAGCGAGCGACGCTGTCGGTGTTC
TTGGCGTGCTTGCTGCTCCACTCGGACGAGGTGGCCTCGAGCCTCCTGGA
AAAGCCCGTCGTGGACAACTACGCCGCTCGTCTCGTGAGTATCGAGGAGT
GAGTACTTGGACATAAGATCCACCGAGGCGGCGGTACGTAGGGGAGGGCT
AGGGGAGCGAGCGACGCTGTCGGTGTTCTTGGCGTGCTTGCTGCTCCACT
CGGACGAGGTGGCCTCGAGCCTCCTGGAAAAGCCCGTCGTGGACAACTAC
GCCGCTCGTCTCGTGAGTATCGAGGAGTGA
back to top