mRNA_H-canaliculatus_F_contig13788.3016.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13788.3016.1
Unique NamemRNA_H-canaliculatus_F_contig13788.3016.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13788.3016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13788contigH-canaliculatus_F_contig13788:309..885 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929120.2811203-CDS-H-canaliculatus_F_contig13788:308..3951622929120.2811203-CDS-H-canaliculatus_F_contig13788:308..395Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13788 309..395 +
1696845685.8608623-CDS-H-canaliculatus_F_contig13788:308..3951696845685.8608623-CDS-H-canaliculatus_F_contig13788:308..395Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13788 309..395 +
1622929120.2923548-CDS-H-canaliculatus_F_contig13788:774..8851622929120.2923548-CDS-H-canaliculatus_F_contig13788:774..885Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13788 775..885 +
1696845685.8696978-CDS-H-canaliculatus_F_contig13788:774..8851696845685.8696978-CDS-H-canaliculatus_F_contig13788:774..885Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13788 775..885 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13788.3016.1prot_H-canaliculatus_F_contig13788.3016.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13788 309..885 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13788.3016.1

>prot_H-canaliculatus_F_contig13788.3016.1 ID=prot_H-canaliculatus_F_contig13788.3016.1|Name=mRNA_H-canaliculatus_F_contig13788.3016.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=66bp
PLFRSPHSLWKALGRRLLPPQASTEPKVKAPLESTDSSRSSGGGGGGGGG
TTAGRDPSETDPPSS*
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mRNA from alignment at H-canaliculatus_F_contig13788:309..885+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13788.3016.1 ID=mRNA_H-canaliculatus_F_contig13788.3016.1|Name=mRNA_H-canaliculatus_F_contig13788.3016.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=577bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13788:309..885+ (Hapterophycus canaliculatus Oshoro5f female)
CCGCTATTTCGGTCACCTCACTCGTTGTGGAAAGCCCTCGGACGCCGACT
TCTCCCTCCTCAAGCCTCTACCGAGCCGAAGGTCAAGGTGCCGCGCCGGT
CCTCATCCTTCTTGGGGGGTCGTCTGTAGATTGGATGCGGTGGGGGTCAA
GTTTGTGTTGCCTGAAACAAGCGAGAACCCGACGGCCGTGGCATGGGGCC
GAACATGCCAACGAGAACGGGTGGCGACGAAGATGAGCGCTCGTCCCTTC
GTGTAGAATGCACCAGAAATGCTGAACGAGCGCTCGGGGCTGAGCGGGGC
GGAAGCACCAAGAGAAGAAGCAACGGACACGGTGTCCCGTGCGAAAGGGA
GATGATATCCACCCGGTCGAGCGTGACCGTGCCAGATGGTCCAGAAGGAG
AGCCCCCTCGTGCAACAAGTCTGCCCCTCCCTTTCCCCTTCGTGCTGACT
TTCCAACTTCGTCCAGGCACCCCTCGAGAGTACTGACAGCAGCAGGAGCA
GCGGCGGCGGCGGCGGCGGCGGCGGGGGCACCACAGCTGGTCGAGATCCT
TCCGAGACGGACCCGCCTAGCAGTTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13788:309..885+

>mRNA_H-canaliculatus_F_contig13788.3016.1 ID=mRNA_H-canaliculatus_F_contig13788.3016.1|Name=mRNA_H-canaliculatus_F_contig13788.3016.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=396bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13788:309..885+ (Hapterophycus canaliculatus Oshoro5f female)
CCGCTATTTCGGTCACCTCACTCGTTGTGGAAAGCCCTCGGACGCCGACT
TCTCCCTCCTCAAGCCTCTACCGAGCCGAAGGTCAAGCCGCTATTTCGGT
CACCTCACTCGTTGTGGAAAGCCCTCGGACGCCGACTTCTCCCTCCTCAA
GCCTCTACCGAGCCGAAGGTCAAGGCACCCCTCGAGAGTACTGACAGCAG
CAGGAGCAGCGGCGGCGGCGGCGGCGGCGGCGGGGGCACCACAGCTGGTC
GAGATCCTTCCGAGACGGACCCGCCTAGCAGTTGAGCACCCCTCGAGAGT
ACTGACAGCAGCAGGAGCAGCGGCGGCGGCGGCGGCGGCGGCGGGGGCAC
CACAGCTGGTCGAGATCCTTCCGAGACGGACCCGCCTAGCAGTTGA
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