mRNA_H-canaliculatus_F_contig13784.3015.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13784.3015.1
Unique NamemRNA_H-canaliculatus_F_contig13784.3015.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13784.3015.1 vs. uniprot
Match: D8LRB4_ECTSI (Cell surface protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRB4_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 4.030e-8
Identity = 39/76 (51.32%), Postives = 46/76 (60.53%), Query Frame = 3 
Query:   66 FVGGGHALCRARSRSGNGPVSDMFFLDA-DPPAP---------------PQLIP--RRSRLPSRERALILEFVQEA 239
            FVGGGH LCRARS S  GPVSD+F L+A D PA                P L+   RR+R PSRERA++L+FV  A
Sbjct:  260 FVGGGHVLCRARSSSATGPVSDIFHLEAADTPAAAGAAXXXXXXXXXXXPTLLRKHRRARFPSRERAVLLDFVPAA 335
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BLAST of mRNA_H-canaliculatus_F_contig13784.3015.1 vs. uniprot
Match: A0A6H5J8H8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8H8_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.970e-7
Identity = 36/75 (48.00%), Postives = 44/75 (58.67%), Query Frame = 3 
Query:   66 FVGGGHALCRARSRSGNGPVSDMFFLDAD---------------PPAPPQLIP--RRSRLPSRERALILEFVQEA 239
            FVGGGH LCR RS S  GPVSD+F L+A                P A P L+   RR+R PSRER+++L+FV  A
Sbjct:  756 FVGGGHVLCRTRSSSAPGPVSDIFHLEAADTPAATGAAAAAPEAPAAAPTLLRNHRRARFPSRERSVLLDFVPAA 830
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13784.3015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRB4_ECTSI4.030e-851.32Cell surface protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5J8H8_9PHAE1.970e-748.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13784contigH-canaliculatus_F_contig13784:136..1121 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size508
Cds size501
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13784.3015.1prot_H-canaliculatus_F_contig13784.3015.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13784 136..1116 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929120.1689856-CDS-H-canaliculatus_F_contig13784:135..5351622929120.1689856-CDS-H-canaliculatus_F_contig13784:135..535Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13784 136..535 -
1696845685.8221154-CDS-H-canaliculatus_F_contig13784:135..5351696845685.8221154-CDS-H-canaliculatus_F_contig13784:135..535Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13784 136..535 -
1622929120.1877692-CDS-H-canaliculatus_F_contig13784:1015..11161622929120.1877692-CDS-H-canaliculatus_F_contig13784:1015..1116Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13784 1016..1116 -
1696845685.8364673-CDS-H-canaliculatus_F_contig13784:1015..11161696845685.8364673-CDS-H-canaliculatus_F_contig13784:1015..1116Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13784 1016..1116 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929120.2015285-UTR-H-canaliculatus_F_contig13784:1116..11211622929120.2015285-UTR-H-canaliculatus_F_contig13784:1116..1121Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13784 1117..1121 -
1696845685.8460941-UTR-H-canaliculatus_F_contig13784:1116..11211696845685.8460941-UTR-H-canaliculatus_F_contig13784:1116..1121Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13784 1117..1121 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13784.3015.1

>prot_H-canaliculatus_F_contig13784.3015.1 ID=prot_H-canaliculatus_F_contig13784.3015.1|Name=mRNA_H-canaliculatus_F_contig13784.3015.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=167bp
MGGGGGAGAGPGGFTDGAGDFVGGGHALCRARSRSGNGPVSDMFFLDADP
PAPPQLIPRRSRLPSRERALILEFVQEASGPAVPESSAAAAAAAASAAML
SSAQASGTESSAPSTPTGGHLFGGARRSSSSRRFGSNRRERFQPSGSGGG
GGGGGVGNIGYSRSGSF
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mRNA from alignment at H-canaliculatus_F_contig13784:136..1121-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13784.3015.1 ID=mRNA_H-canaliculatus_F_contig13784.3015.1|Name=mRNA_H-canaliculatus_F_contig13784.3015.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=986bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13784:136..1121- (Hapterophycus canaliculatus Oshoro5f female)
CCGGGATGGGCGGCGGTGGTGGTGCGGGCGCAGGTCCCGGGGGGTTCACG
GACGGTGCTGGGGACTTCGTGGGTGGTGGTCACGCGCTGTGCCGCGCTCG
CTCGAGGTGGGTTGCGTCGTCCTGCACGAGCGTCGTGCCCACGTGGACCG
CCTCGGCGCCGCGTGCGAGTTCAGGTTCAGGTTTATGCCTGGGCGTCGGG
CTCTCTCATCGGTTGCGCGCGGCTTGTCGGGTCTGTACGCACTGGTTCAC
GTCCGTCGTGCGGGCGTAAGCATGGTTTTTTTGCGCCCGTATCCCCGTTA
TCTCCGCCTGCCCGTGGGGTTCCCCTTGTCGCTCGTCTGTCGTTTGTGCA
CGAGCTGCGGTCGATGCTGTACGGTCGAAGCGCCAGCGCCAGGGTGTCCC
TGCCTTCCGCACCCGTCCCCGCTCCCCGCCACCTGCCTCCACCAGCGCGT
CGAGAGACCCATTGACTACGGCGACGATATGCGAGGTTCGTGTGAAAAAT
GTACTGTAAAACCCATCGACGACCTTTGTCAAACGTCTCACTCCACTCCA
AACCTCCCCGACCCAACCTATCGGACCTCTTTTTAGATCCGGGAACGGTC
CAGTCTCCGACATGTTCTTCCTGGACGCGGACCCCCCCGCACCGCCGCAG
CTGATCCCGCGGCGCTCCCGGCTCCCCAGCCGCGAACGGGCTCTGATCCT
CGAGTTCGTCCAAGAAGCATCGGGGCCGGCAGTGCCTGAATCATCAGCGG
CGGCGGCGGCGGCGGCGGCGTCGGCGGCGATGTTGTCTTCGGCCCAGGCA
TCGGGTACTGAGTCCTCGGCTCCGTCAACGCCCACCGGCGGCCATCTTTT
CGGCGGCGCCCGCCGCTCGAGTAGCTCTCGGCGGTTCGGCAGCAACCGGC
GGGAGAGGTTTCAACCATCTGGTAGCGGCGGCGGCGGCGGCGGTGGCGGT
GTCGGCAACATAGGCTACAGCCGTAGCGGCAGCTTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13784:136..1121-

>mRNA_H-canaliculatus_F_contig13784.3015.1 ID=mRNA_H-canaliculatus_F_contig13784.3015.1|Name=mRNA_H-canaliculatus_F_contig13784.3015.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1002bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13784:136..1121- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGCGGCGGTGGTGGTGCGGGCGCAGGTCCCGGGGGGTTCACGGACGG
TGCTGGGGACTTCGTGGGTGGTGGTCACGCGCTGTGCCGCGCTCGCTCGA
GATGGGCGGCGGTGGTGGTGCGGGCGCAGGTCCCGGGGGGTTCACGGACG
GTGCTGGGGACTTCGTGGGTGGTGGTCACGCGCTGTGCCGCGCTCGCTCG
AGATCCGGGAACGGTCCAGTCTCCGACATGTTCTTCCTGGACGCGGACCC
CCCCGCACCGCCGCAGCTGATCCCGCGGCGCTCCCGGCTCCCCAGCCGCG
AACGGGCTCTGATCCTCGAGTTCGTCCAAGAAGCATCGGGGCCGGCAGTG
CCTGAATCATCAGCGGCGGCGGCGGCGGCGGCGGCGTCGGCGGCGATGTT
GTCTTCGGCCCAGGCATCGGGTACTGAGTCCTCGGCTCCGTCAACGCCCA
CCGGCGGCCATCTTTTCGGCGGCGCCCGCCGCTCGAGTAGCTCTCGGCGG
TTCGGCAGCAACCGGCGGGAGAGGTTTCAACCATCTGGTAGCGGCGGCGG
CGGCGGCGGTGGCGGTGTCGGCAACATAGGCTACAGCCGTAGCGGCAGCT
TCATCCGGGAACGGTCCAGTCTCCGACATGTTCTTCCTGGACGCGGACCC
CCCCGCACCGCCGCAGCTGATCCCGCGGCGCTCCCGGCTCCCCAGCCGCG
AACGGGCTCTGATCCTCGAGTTCGTCCAAGAAGCATCGGGGCCGGCAGTG
CCTGAATCATCAGCGGCGGCGGCGGCGGCGGCGGCGTCGGCGGCGATGTT
GTCTTCGGCCCAGGCATCGGGTACTGAGTCCTCGGCTCCGTCAACGCCCA
CCGGCGGCCATCTTTTCGGCGGCGCCCGCCGCTCGAGTAGCTCTCGGCGG
TTCGGCAGCAACCGGCGGGAGAGGTTTCAACCATCTGGTAGCGGCGGCGG
CGGCGGCGGTGGCGGTGTCGGCAACATAGGCTACAGCCGTAGCGGCAGCT
TC
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