mRNA_H-canaliculatus_F_contig1378.3011.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1378.3011.1
Unique NamemRNA_H-canaliculatus_F_contig1378.3011.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1378.3011.1 vs. uniprot
Match: D7FMM7_ECTSI (Ubiquinone biosynthesis protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMM7_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 2.850e-38
Identity = 108/151 (71.52%), Postives = 118/151 (78.15%), Query Frame = 1 
Query:    1 AADVATGVSTVAXXXXXXXXXXAGPFLRQASKQVPGAETLAQTAPNVASLASQALSFIASQVPHAGQ-PPFGGSVSGLSQSASGVTTPASAATSGHAHASEAPPTFPGAPERDPWVET---PGPSAGGKPGKFEEELAREERELFGDKEGK 441
            AADVATG+ST  XXXXXXXXXXAGPF +QASKQVPGAETLAQTAPNVA+LASQALSF+ASQVP AGQ PPF G  SG  QSAS  ++ A+   +GH      PPTFPGAPE+DPW  T      +A GKPGKFEEELAREERELFGD E K
Sbjct:  240 AADVATGLSTXXXXXXXXXXXXAGPFFKQASKQVPGAETLAQTAPNVAALASQALSFVASQVPRAGQGPPFSGGASGPPQSAS-ASSAATQTKTGHDTPPPLPPTFPGAPEQDPWSSTHASAAAAASGKPGKFEEELAREERELFGDDEKK 389
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BLAST of mRNA_H-canaliculatus_F_contig1378.3011.1 vs. uniprot
Match: A0A6H5JV38_9PHAE (Ubiquinone biosynthesis protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV38_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 5.780e-28
Identity = 96/149 (64.43%), Postives = 102/149 (68.46%), Query Frame = 1 
Query:    1 AADVATGVSTVAXXXXXXXXXXAGPFLRQASKQVPGAETLAQTAPNVASLASQALSFIASQVPHAGQ-PPFGGSVSGLSQSASGVTTPASAATSGHAHASEAPPTFPGAPERDPWVET---PGPSAGGKPGKFEEELAREERELFGDKE 435
            AADVATG+ TVAXXXXXXXX  AGPFL+QASKQVPGAE LAQTAPNVA+LASQALSF+ASQVP AGQ PPF G  SG                           TFPGAPE+DPW  T      +A G PGKFEEELAREERELFGD E
Sbjct:  360 AADVATGLGTVAXXXXXXXXSLAGPFLKQASKQVPGAEALAQTAPNVAALASQALSFVASQVPRAGQGPPFSGGASGPPXXXXXXXXXXXXXXXXXXXXXXXX-TFPGAPEQDPWSSTHASTAAAASGTPGKFEEELAREERELFGDGE 507
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1378.3011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMM7_ECTSI2.850e-3871.52Ubiquinone biosynthesis protein n=1 Tax=Ectocarpus... [more]
A0A6H5JV38_9PHAE5.780e-2864.43Ubiquinone biosynthesis protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1378contigH-canaliculatus_F_contig1378:435..3175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score158.3
Seed ortholog evalue2.8e-36
Seed eggNOG ortholog2880.D7FMM7
Preferred nameCOQ9
KEGG koko:K08869,ko:K18587
GOsGO:0000151,GO:0003674,GO:0004857,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008289,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009892,GO:0009987,GO:0010605,GO:0015980,GO:0016020,GO:0016310,GO:0017144,GO:0019222,GO:0019637,GO:0019693,GO:0019866,GO:0019899,GO:0022900,GO:0022904,GO:0030234,GO:0031090,GO:0031323,GO:0031324,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031461,GO:0031625,GO:0031966,GO:0031967,GO:0031975,GO:0032268,GO:0032269,GO:0032991,GO:0034641,GO:0042180,GO:0042181,GO:0042773,GO:0042775,GO:0042802,GO:0042803,GO:0043086,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044389,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046034,GO:0046483,GO:0046983,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051172,GO:0051186,GO:0051188,GO:0051246,GO:0051248,GO:0055086,GO:0055105,GO:0055106,GO:0055114,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0072521,GO:0080090,GO:0098772,GO:1901004,GO:1901006,GO:1901135,GO:1901360,GO:1901564,GO:1901576,GO:1901661,GO:1901663,GO:1902494,GO:1903320,GO:1903321,GO:1990234
EggNOG free text desc.rpsU-divergently transcribed protein
EggNOG OGsCOG5590@1,KOG2969@2759
COG Functional cat.S
BiGG ReactioniMM904.YLR201C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01001
Hectar predicted targeting categoryother localisation
Exons3
Model size1725
Cds size444
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1378.3011.1prot_H-canaliculatus_F_contig1378.3011.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1378 435..1894 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929119.5769882-CDS-H-canaliculatus_F_contig1378:434..5331622929119.5769882-CDS-H-canaliculatus_F_contig1378:434..533Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1378 435..533 +
1696845685.5807557-CDS-H-canaliculatus_F_contig1378:434..5331696845685.5807557-CDS-H-canaliculatus_F_contig1378:434..533Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1378 435..533 +
1622929119.6284282-CDS-H-canaliculatus_F_contig1378:1092..11891622929119.6284282-CDS-H-canaliculatus_F_contig1378:1092..1189Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1378 1093..1189 +
1696845685.5934432-CDS-H-canaliculatus_F_contig1378:1092..11891696845685.5934432-CDS-H-canaliculatus_F_contig1378:1092..1189Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1378 1093..1189 +
1622929119.6463654-CDS-H-canaliculatus_F_contig1378:1646..18941622929119.6463654-CDS-H-canaliculatus_F_contig1378:1646..1894Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1378 1647..1894 +
1696845685.6024334-CDS-H-canaliculatus_F_contig1378:1646..18941696845685.6024334-CDS-H-canaliculatus_F_contig1378:1646..1894Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1378 1647..1894 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929119.6703084-UTR-H-canaliculatus_F_contig1378:1894..31751622929119.6703084-UTR-H-canaliculatus_F_contig1378:1894..3175Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1378 1895..3175 +
1696845685.6108427-UTR-H-canaliculatus_F_contig1378:1894..31751696845685.6108427-UTR-H-canaliculatus_F_contig1378:1894..3175Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1378 1895..3175 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1378.3011.1

>prot_H-canaliculatus_F_contig1378.3011.1 ID=prot_H-canaliculatus_F_contig1378.3011.1|Name=mRNA_H-canaliculatus_F_contig1378.3011.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=148bp
AADVATGVSTVATSLSSAAVSLAGPFLRQASKQVPGAETLAQTAPNVASL
ASQALSFIASQVPHAGQPPFGGSVSGLSQSASGVTTPASAATSGHAHASE
APPTFPGAPERDPWVETPGPSAGGKPGKFEEELAREERELFGDKEGK*
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mRNA from alignment at H-canaliculatus_F_contig1378:435..3175+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1378.3011.1 ID=mRNA_H-canaliculatus_F_contig1378.3011.1|Name=mRNA_H-canaliculatus_F_contig1378.3011.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2741bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1378:435..3175+ (Hapterophycus canaliculatus Oshoro5f female)
GCGGCGGATGTCGCGACAGGAGTGAGCACCGTAGCTACGTCGCTTAGCTC
CGCGGCTGTGTCCCTCGCGGGGCCGTTTTTGAGACAAGCTTCCAAGCAGG
TGAAGGACTACCCTCTATCCCTGTTTTGTACGCCATGGTATGATATCTCT
CCCCATGTGTCCTGCACTTGGTTTGCTCTCCGTTTAGCCCATCAGCGTGT
ATGACAGCACTTCTCGTACCTCTGTGTGACGCTGCCTGCGCGAGGTTTGC
TCTCCGCTTAGCCCATCAGCGTGTATGGCAGTACTTCTCGTACCTATAAG
TGACGCCGCCTGGGCGACTTCAAGCAGCGTTAGAGCTATAGTCTTGAAGG
AGCAATCAGCGTTGGAGTGCGAGTGTGCGTTCGCACCTCCTTGATCGCAG
CATGAGCTACCGGAGAGGGAATAGCTGGTGCGCTAAGAGAACATCAAGGC
ACACTCCGTTCCAATCGCGTTTGGTTATCTACGGCGTTGAGTCACGAAGT
TTTTCTCTTTCCCACGTTCTTCCTTCTGCGGAAGATCCGTTTCTGATTGG
TCGCCTCACCTGCGTTATGTCGTGCACAATCTGTTCGGCTTGTCAGACGC
CCTCTCTCTCTCTCTCTTCTTTCCTGGTGTAATGTGGTGTAATGCGTAAT
GTCTACAGGTGCCCGGGGCGGAAACGCTCGCCCAGACGGCACCGAACGTG
GCCTCGTTGGCTTCGCAGGCGCTGTCCTTCATTGCGTCACAAGTGCCGCA
TGCCGGTAAGAGGTCACTGTCGCTGTCGCTCTCGCAATTGCTGCTGCCGC
TTCTACTGCTGATTTAACATTGTTCTCGCTCCTTTCGTTCTCGCTCCTTT
CGTTCTCGCTCGTTTCGTTGCTGACATTTTTACTGCCGATTCTGATGTTG
TCGTGTCGTTGTTCCTGAGGACCATGGCCATGATGGCGGCGAGTTCTCCC
ACAGCGGTCTCCCTGACGTCAAGCAACCTCATCTTCATCCCATGCACACG
CTTTACTCGAAGGCAATGCATCCTTATCCTTTCATCCTCGCCGCCGCCCG
CACCGGGTGGCAACGATTCCGGCCGAGGACTCGGGCAGACACGTACCCTC
CCCCACCCGGCCTACCGCGAACTGCAACACATCACCAGCAACGCCTTCTC
CGCCGTTCACCCTTTCCCCCCCCTCCCGCCCGTTCCTGAAACAATCCCTC
CTACCCTTTCAGGACAACCACCGTTCGGCGGCAGCGTCAGCGGCCTTTCG
CAGTCCGCGTCGGGAGTGACGACGCCCGCCAGCGCCGCCACCAGTGGGCA
CGCACACGCAAGCGAGGCACCACCCACCTTCCCGGGGGCGCCCGAGCGAG
ACCCGTGGGTCGAAACGCCTGGGCCATCTGCGGGTGGAAAACCTGGAAAG
TTTGAGGAGGAGCTGGCGCGGGAGGAGCGAGAGCTCTTTGGGGACAAGGA
GGGTAAATAGGAAATGCGTGGACTTACAGCTCTCGTGGGTTTTTCGGGTT
TGTTGTACTTGGTGGGCTTTGTAATCGGACAGAGCGACGGAAAGCGGGAT
GAAAACATCTGTGTGTCTCGATTTTGGTTGATCGATTCCCTTGTCTAGAC
GTGTTCGGAGAGGTGAAGGGGCCTCTTCGCGAGAGCGAGGGAAGGTTGCA
ATGGTGGTCTTGGATTATGTAGGTAGGTTAGGCCGCGTGAAGCACTTCGA
TATGATACGTAGCTCTCTGGTTGTCGGACGGACTACGTTCTCGGACGGGC
AAGTGCAATGCTGCGTTCATTTTTTCCTCCTCAGAGGTTGTGCTTGGTTG
CCTGGTACATGGATCCCCTTTAGGTCACATTTTGGACGATCTTTTCTTAA
GGTCTACAAATGGAAGCTTGAAGCTTGTTCGGCAACTTACCCACCACCGT
CAGGTTCAGACTTTTGTTGCAAGCATTGGTCATTCGTCGCGTTTTTTTCC
TCTCCGTTACGACTTTGACGGAACCTTTCACCAAAATGCCTGTCTGTTCC
CCAGCTTCAGTTTTTGGTAAAAGCTTGTCCTTTATGGTTGAGAATGATTC
GTATATTTTTTCATGCTTTCGAAACTGACTTGCTCAATTCTCCGGTCAAG
AGCTCGCCAAAAAGTCGGAAGAAACTCAGGAACTGTCGAACAGGAACGAA
GTGGAAGCATCCACCTATCTGTCGATCCTAGACGTCTGACCCCTCGACGG
TACCTCTTCCGCATGCCACGACTGCTGTTGCTGTCACCACCGACGGTATT
CTTTCGCTCGCACTGAAAAAAGAGGTCGGAGCTTTGTGTCGTGTTGAAGG
AGATAGCTCGATCCCTGTCGTACGTGAAATCGGCACGTGAAAAAATGTGC
GCCTCGGAGGAAGACGGGAAGAAAAAAACGAGGGACCGGGTGTTGTGATT
GGTATGTGTTTCGTACTCCATTATCCTTCCATGTTGACGCTGTCATTTCG
TCCGTGCTGCAAGTTCGAAAAAACTCGAAGGTCCACTTTGACGATCTATT
TCACCCACAGCACTCCAGTGGATCCCTCGCACTCAAGCTAGCTTTTCCTC
GTCTTGGCCAGCGGCTGGGTGAAGCTGGACCTCTCAGTGTGTGTGTGTGT
GTGTGTGTCCCATTTTTAGTTGACCGCCCCACCCCTTCGCGGTCGATCCC
GTCTCAACCGGGGGTACACGGGAGGAAAGTAAACAGTACCGAGATTTCCA
TTTTTGTTGTCTTTCTCCGCCTTATACCTATGGTGCTTGCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1378:435..3175+

>mRNA_H-canaliculatus_F_contig1378.3011.1 ID=mRNA_H-canaliculatus_F_contig1378.3011.1|Name=mRNA_H-canaliculatus_F_contig1378.3011.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=888bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1378:435..3175+ (Hapterophycus canaliculatus Oshoro5f female)
GCGGCGGATGTCGCGACAGGAGTGAGCACCGTAGCTACGTCGCTTAGCTC
CGCGGCTGTGTCCCTCGCGGGGCCGTTTTTGAGACAAGCTTCCAAGCAGG
CGGCGGATGTCGCGACAGGAGTGAGCACCGTAGCTACGTCGCTTAGCTCC
GCGGCTGTGTCCCTCGCGGGGCCGTTTTTGAGACAAGCTTCCAAGCAGGT
GCCCGGGGCGGAAACGCTCGCCCAGACGGCACCGAACGTGGCCTCGTTGG
CTTCGCAGGCGCTGTCCTTCATTGCGTCACAAGTGCCGCATGCCGGTGCC
CGGGGCGGAAACGCTCGCCCAGACGGCACCGAACGTGGCCTCGTTGGCTT
CGCAGGCGCTGTCCTTCATTGCGTCACAAGTGCCGCATGCCGGACAACCA
CCGTTCGGCGGCAGCGTCAGCGGCCTTTCGCAGTCCGCGTCGGGAGTGAC
GACGCCCGCCAGCGCCGCCACCAGTGGGCACGCACACGCAAGCGAGGCAC
CACCCACCTTCCCGGGGGCGCCCGAGCGAGACCCGTGGGTCGAAACGCCT
GGGCCATCTGCGGGTGGAAAACCTGGAAAGTTTGAGGAGGAGCTGGCGCG
GGAGGAGCGAGAGCTCTTTGGGGACAAGGAGGGTAAATAGGACAACCACC
GTTCGGCGGCAGCGTCAGCGGCCTTTCGCAGTCCGCGTCGGGAGTGACGA
CGCCCGCCAGCGCCGCCACCAGTGGGCACGCACACGCAAGCGAGGCACCA
CCCACCTTCCCGGGGGCGCCCGAGCGAGACCCGTGGGTCGAAACGCCTGG
GCCATCTGCGGGTGGAAAACCTGGAAAGTTTGAGGAGGAGCTGGCGCGGG
AGGAGCGAGAGCTCTTTGGGGACAAGGAGGGTAAATAG
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