mRNA_H-canaliculatus_F_contig13774.3009.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13774.3009.1
Unique NamemRNA_H-canaliculatus_F_contig13774.3009.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13774.3009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13774contigH-canaliculatus_F_contig13774:527..1312 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size786
Cds size465
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13774.3009.1prot_H-canaliculatus_F_contig13774.3009.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13774 608..1072 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929119.3799698-UTR-H-canaliculatus_F_contig13774:526..6071622929119.3799698-UTR-H-canaliculatus_F_contig13774:526..607Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13774 527..607 +
1696845685.5155532-UTR-H-canaliculatus_F_contig13774:526..6071696845685.5155532-UTR-H-canaliculatus_F_contig13774:526..607Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13774 527..607 +
1622929119.4193313-UTR-H-canaliculatus_F_contig13774:1072..13121622929119.4193313-UTR-H-canaliculatus_F_contig13774:1072..1312Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13774 1073..1312 +
1696845685.5394495-UTR-H-canaliculatus_F_contig13774:1072..13121696845685.5394495-UTR-H-canaliculatus_F_contig13774:1072..1312Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13774 1073..1312 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929119.400727-CDS-H-canaliculatus_F_contig13774:607..10721622929119.400727-CDS-H-canaliculatus_F_contig13774:607..1072Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13774 608..1072 +
1696845685.5291412-CDS-H-canaliculatus_F_contig13774:607..10721696845685.5291412-CDS-H-canaliculatus_F_contig13774:607..1072Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13774 608..1072 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13774.3009.1

>prot_H-canaliculatus_F_contig13774.3009.1 ID=prot_H-canaliculatus_F_contig13774.3009.1|Name=mRNA_H-canaliculatus_F_contig13774.3009.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=155bp
MESASEEGLDGVEWWRSRRPILSPRKGVRGARGERPGFGKTNRASQSFLG
KVSATPPSPMARPPTLAAAPMPSPLLSEHPRVGGLCNAPLCARTCLSGVL
GNSLLFFCRTSGSKNGGGGGGGGCALRHIIDWGYSRRCYRSVFGSHLPVH
GGVV*
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mRNA from alignment at H-canaliculatus_F_contig13774:527..1312+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13774.3009.1 ID=mRNA_H-canaliculatus_F_contig13774.3009.1|Name=mRNA_H-canaliculatus_F_contig13774.3009.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=786bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13774:527..1312+ (Hapterophycus canaliculatus Oshoro5f female)
GGGGCGGGTTCGGGCTTGGGAGTGGCTACGGCGGGTGCGGGCGCGTGGGA
CCCTTGGTGGAGAGATGGGTCGAGGTTCACCATGGAAAGCGCAAGCGAAG
AAGGCTTAGACGGGGTCGAGTGGTGGAGAAGCCGCCGTCCGATTCTCTCT
CCGCGGAAGGGGGTGCGGGGGGCGAGGGGCGAGAGGCCAGGGTTTGGGAA
GACGAACAGGGCTTCTCAAAGCTTTCTGGGCAAGGTCTCCGCGACCCCTC
CCTCTCCGATGGCACGCCCTCCAACTCTTGCGGCGGCACCCATGCCGTCC
CCTTTGTTGTCCGAACACCCGCGGGTTGGGGGGCTTTGCAACGCTCCCCT
TTGCGCCCGCACGTGTCTTTCGGGTGTGCTCGGCAATTCATTGTTGTTTT
TTTGCCGAACCTCCGGATCGAAAAACGGCGGCGGCGGCGGCGGCGGCGGC
TGTGCTTTACGGCATATCATTGACTGGGGTTATAGCCGGCGATGCTATCG
CTCCGTTTTTGGCTCACACCTGCCCGTGCATGGCGGAGTTGTATGAAGGG
GATCCCCACCGTCGGGGCACGGCAAGATTGAAATCGCTCGAGCCAAGGTT
TCCACGTCTCCACAGACGAAGCTTTAAGCCAGCACTCCCAAGAAACCTCT
CTGCCTCTCTCGCCGCCTTTCTTCCTCTCGCCAACAGCAACCGTCCGTCC
GCCCTTCGGCCCCTTTCGCGCTACGCGTCTGTGGTGGCTATTCCACCCCG
ACGTGTGTACGTACTTGTACGTACTTGTACGTACGT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13774:527..1312+

>mRNA_H-canaliculatus_F_contig13774.3009.1 ID=mRNA_H-canaliculatus_F_contig13774.3009.1|Name=mRNA_H-canaliculatus_F_contig13774.3009.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=930bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13774:527..1312+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGAAAGCGCAAGCGAAGAAGGCTTAGACGGGGTCGAGTGGTGGAGAAG
CCGCCGTCCGATTCTCTCTCCGCGGAAGGGGGTGCGGGGGGCGAGGGGCG
AGAGGCCAGGGTTTGGGAAGACGAACAGGGCTTCTCAAAGCTTTCTGGGC
AAGGTCTCCGCGACCCCTCCCTCTCCGATGGCACGCCCTCCAACTCTTGC
GGCGGCACCCATGCCGTCCCCTTTGTTGTCCGAACACCCGCGGGTTGGGG
GGCTTTGCAACGCTCCCCTTTGCGCCCGCACGTGTCTTTCGGGTGTGCTC
GGCAATTCATTGTTGTTTTTTTGCCGAACCTCCGGATCGAAAAACGGCGG
CGGCGGCGGCGGCGGCGGCTGTGCTTTACGGCATATCATTGACTGGGGTT
ATAGCCGGCGATGCTATCGCTCCGTTTTTGGCTCACACCTGCCCGTGCAT
GGCGGAGTTGTATGAATGGAAAGCGCAAGCGAAGAAGGCTTAGACGGGGT
CGAGTGGTGGAGAAGCCGCCGTCCGATTCTCTCTCCGCGGAAGGGGGTGC
GGGGGGCGAGGGGCGAGAGGCCAGGGTTTGGGAAGACGAACAGGGCTTCT
CAAAGCTTTCTGGGCAAGGTCTCCGCGACCCCTCCCTCTCCGATGGCACG
CCCTCCAACTCTTGCGGCGGCACCCATGCCGTCCCCTTTGTTGTCCGAAC
ACCCGCGGGTTGGGGGGCTTTGCAACGCTCCCCTTTGCGCCCGCACGTGT
CTTTCGGGTGTGCTCGGCAATTCATTGTTGTTTTTTTGCCGAACCTCCGG
ATCGAAAAACGGCGGCGGCGGCGGCGGCGGCGGCTGTGCTTTACGGCATA
TCATTGACTGGGGTTATAGCCGGCGATGCTATCGCTCCGTTTTTGGCTCA
CACCTGCCCGTGCATGGCGGAGTTGTATGA
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