mRNA_H-canaliculatus_F_contig13769.3004.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13769.3004.1
Unique NamemRNA_H-canaliculatus_F_contig13769.3004.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13769.3004.1 vs. uniprot
Match: A0A6H5K128_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K128_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 3.730e-54
Identity = 89/99 (89.90%), Postives = 93/99 (93.94%), Query Frame = 1 
Query:    1 FVVANDPDGDRLAAAERQPSGEWRVFSGNEIGTLLGLWQWEEWRRTHPDEDASNAVMIASTVSSNMLSAVARQEGFTFEETLPGFKWMGHRGQQLKVGG 297
            FV+ANDPDGDRLAAAERQPSG+W VFSGNEIGTLLG+WQWEEWRR HP+EDASNAVMIASTVSS MLSAVAR EGFTFEETLPGFKWMGHRGQQLK  G
Sbjct:  400 FVLANDPDGDRLAAAERQPSGDWYVFSGNEIGTLLGVWQWEEWRRKHPEEDASNAVMIASTVSSKMLSAVARFEGFTFEETLPGFKWMGHRGQQLKAEG 498
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BLAST of mRNA_H-canaliculatus_F_contig13769.3004.1 vs. uniprot
Match: D7G3G9_ECTSI (Bifunctional Aldehyde Dehydrogenase/Phosphoglucomutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3G9_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 6.700e-42
Identity = 73/82 (89.02%), Postives = 75/82 (91.46%), Query Frame = 1 
Query:   52 QPSGEWRVFSGNEIGTLLGLWQWEEWRRTHPDEDASNAVMIASTVSSNMLSAVARQEGFTFEETLPGFKWMGHRGQQLKVGG 297
            QPSG+W VFSGNEIGTLLG+WQWEEWRR H DEDASNAVMIASTVSS MLSAVAR EGFTFEETLPGFKWMGHRGQQLK  G
Sbjct:  520 QPSGDWYVFSGNEIGTLLGVWQWEEWRRKHADEDASNAVMIASTVSSKMLSAVARFEGFTFEETLPGFKWMGHRGQQLKAEG 601
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BLAST of mRNA_H-canaliculatus_F_contig13769.3004.1 vs. uniprot
Match: A0A183AN93_9TREM (Uncharacterized protein n=1 Tax=Echinostoma caproni TaxID=27848 RepID=A0A183AN93_9TREM)

HSP 1 Score: 131 bits (329), Expect = 6.660e-34
Identity = 57/99 (57.58%), Postives = 72/99 (72.73%), Query Frame = 1 
Query:    1 FVVANDPDGDRLAAAERQPSGEWRVFSGNEIGTLLGLWQWEEWRRTHPDEDASNAVMIASTVSSNMLSAVARQEGFTFEETLPGFKWMGHRGQQLKVGG 297
             ++ANDPD DRLA AE+Q SG W++FSGNE+G L G W W  WR+ +P+ D S   M++STVSS +L  +A +EGF FEETL GFKWMG+R QQL   G
Sbjct:  294 LILANDPDADRLAVAEKQASGTWKIFSGNELGALFGWWIWSNWRKRNPNADPSTVGMLSSTVSSKILHTIAEKEGFYFEETLTGFKWMGNRAQQLAADG 392
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BLAST of mRNA_H-canaliculatus_F_contig13769.3004.1 vs. uniprot
Match: H2KRW5_CLOSI (Phosphoglucomutase n=5 Tax=Opisthorchiidae TaxID=6196 RepID=H2KRW5_CLOSI)

HSP 1 Score: 130 bits (328), Expect = 1.040e-33
Identity = 54/94 (57.45%), Postives = 73/94 (77.66%), Query Frame = 1 
Query:    4 VVANDPDGDRLAAAERQPSGEWRVFSGNEIGTLLGLWQWEEWRRTHPDEDASNAVMIASTVSSNMLSAVARQEGFTFEETLPGFKWMGHRGQQL 285
            ++ANDPD DRLA AE+QP G+W++F+GNE+G + G W W +WR+ +PD D S   M++STVSS +L  +A++EGF FEETL GFKWMG+R  QL
Sbjct:  232 ILANDPDADRLAVAEKQPDGKWKIFNGNELGAMFGCWIWSQWRKRNPDADPSRYGMLSSTVSSKILDTIAKKEGFYFEETLTGFKWMGNRTDQL 325
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BLAST of mRNA_H-canaliculatus_F_contig13769.3004.1 vs. uniprot
Match: A0A485LAK5_9STRA (Aste57867_18499 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LAK5_9STRA)

HSP 1 Score: 129 bits (325), Expect = 4.550e-33
Identity = 58/99 (58.59%), Postives = 74/99 (74.75%), Query Frame = 1 
Query:    1 FVVANDPDGDRLAAAERQPSGEWRVFSGNEIGTLLGLWQWEEWRRTHPDEDASNAVMIASTVSSNMLSAVARQEGFTFEETLPGFKWMGHRGQQLKVGG 297
             ++ANDPD DRLA AE+ PSGEW +F+GNEIGTLLG WQ+++  + HP  D S   ++ASTVSS ML  +AR+EGF F ETL GFKWMG+  Q+L+  G
Sbjct:  311 LILANDPDADRLAVAEQLPSGEWHLFTGNEIGTLLGYWQYQQHMKAHPTADKSQLYVVASTVSSKMLRTIARREGFNFVETLTGFKWMGNETQKLRDAG 409
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BLAST of mRNA_H-canaliculatus_F_contig13769.3004.1 vs. uniprot
Match: A0A8E0S1S3_9TREM (Phosphoglucomutase n=1 Tax=Fasciolopsis buski TaxID=27845 RepID=A0A8E0S1S3_9TREM)

HSP 1 Score: 129 bits (325), Expect = 4.570e-33
Identity = 57/99 (57.58%), Postives = 72/99 (72.73%), Query Frame = 1 
Query:    1 FVVANDPDGDRLAAAERQPSGEWRVFSGNEIGTLLGLWQWEEWRRTHPDEDASNAVMIASTVSSNMLSAVARQEGFTFEETLPGFKWMGHRGQQLKVGG 297
             ++ANDPD DRLA AE+Q +G W++FSGNE+G L G W W  WR+ +P  DAS   M++STVSS +L  +A QEGF FEETL GFKWMG+R Q+L   G
Sbjct:  302 LILANDPDADRLAVAEKQSNGTWKIFSGNELGALFGWWIWLNWRKRNPKADASKVGMLSSTVSSKILQTMAEQEGFYFEETLTGFKWMGNRAQELATEG 400
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BLAST of mRNA_H-canaliculatus_F_contig13769.3004.1 vs. uniprot
Match: A0A8C7MW35_ONCKI (Uncharacterized protein n=2 Tax=Oncorhynchus kisutch TaxID=8019 RepID=A0A8C7MW35_ONCKI)

HSP 1 Score: 125 bits (315), Expect = 5.330e-33
Identity = 58/95 (61.05%), Postives = 76/95 (80.00%), Query Frame = 1 
Query:    4 VVANDPDGDRLAAAERQPSGEWRVFSGNEIGTLLGLWQWEEWRRTHPDEDASNAV-MIASTVSSNMLSAVARQEGFTFEETLPGFKWMGHRGQQL 285
            V+ANDPD DRLA AE+Q  G+WRVFSGNE+G LLG W ++ W++T+PD+    +V M+ASTVSS +L A+A +EGF FEETL GFKWMG+R ++L
Sbjct:   52 VLANDPDADRLAVAEQQKGGQWRVFSGNELGALLGWWVYQCWKQTNPDQSTVKSVYMLASTVSSKILRAIALKEGFHFEETLTGFKWMGNRAREL 146
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BLAST of mRNA_H-canaliculatus_F_contig13769.3004.1 vs. uniprot
Match: A0A504Z3Z6_FASGI (Phosphoglucomutase n=3 Tax=Fasciola TaxID=6191 RepID=A0A504Z3Z6_FASGI)

HSP 1 Score: 129 bits (324), Expect = 6.310e-33
Identity = 57/99 (57.58%), Postives = 71/99 (71.72%), Query Frame = 1 
Query:    1 FVVANDPDGDRLAAAERQPSGEWRVFSGNEIGTLLGLWQWEEWRRTHPDEDASNAVMIASTVSSNMLSAVARQEGFTFEETLPGFKWMGHRGQQLKVGG 297
             ++ANDPD DRLA AE+Q  G W++FSGNE+G L G W W  WR+ +P  DAS   M++STVSS +L  +A QEGF FEETL GFKWMG+R Q+L   G
Sbjct:  302 LILANDPDADRLAVAEKQTDGNWKIFSGNELGALFGWWIWFNWRKRNPKADASKVGMLSSTVSSKILHTMAEQEGFYFEETLTGFKWMGNRAQELAAEG 400
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BLAST of mRNA_H-canaliculatus_F_contig13769.3004.1 vs. uniprot
Match: A0A2P6NL98_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NL98_9EUKA)

HSP 1 Score: 129 bits (324), Expect = 8.250e-33
Identity = 55/99 (55.56%), Postives = 78/99 (78.79%), Query Frame = 1 
Query:    1 FVVANDPDGDRLAAAERQPSGEWRVFSGNEIGTLLGLWQWEEWRRTHPDEDASNAVMIASTVSSNMLSAVARQEGFTFEETLPGFKWMGHRGQQLKVGG 297
             V+ANDPD DRLA AE+Q SGEW++F+GNEIG LLG W W ++R  HP+ D +N V++ +TVSS ML+++A++EG  +EETL GFKW+G++ Q+L+  G
Sbjct:  311 IVIANDPDADRLAVAEKQKSGEWKIFTGNEIGILLGHWVWSQYRLKHPEVDPANCVVLNTTVSSKMLASMAKKEGLYYEETLTGFKWLGNKAQELEKTG 409
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BLAST of mRNA_H-canaliculatus_F_contig13769.3004.1 vs. uniprot
Match: A0A1B6K757_9HEMI (Uncharacterized protein (Fragment) n=1 Tax=Homalodisca liturata TaxID=320908 RepID=A0A1B6K757_9HEMI)

HSP 1 Score: 124 bits (310), Expect = 1.390e-32
Identity = 58/98 (59.18%), Postives = 71/98 (72.45%), Query Frame = 1 
Query:    4 VVANDPDGDRLAAAERQPSGEWRVFSGNEIGTLLGLWQWEEWRRTHPDEDASNAVMIASTVSSNMLSAVARQEGFTFEETLPGFKWMGHRGQQLKVGG 297
            +VANDPD DRLA AE+  SGEW+VF+GNE+G LLG W    ++R +PD D SN  MI+STVSS +L  +A+QE F FEETL GFKWMG R  +L   G
Sbjct:    2 IVANDPDADRLAVAEKTRSGEWKVFTGNELGALLGWWSLYTYQRRNPDSDLSNVYMISSTVSSKILKTMAKQEKFNFEETLTGFKWMGTRSAELVAQG 99
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13769.3004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K128_9PHAE3.730e-5489.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3G9_ECTSI6.700e-4289.02Bifunctional Aldehyde Dehydrogenase/Phosphoglucomu... [more]
A0A183AN93_9TREM6.660e-3457.58Uncharacterized protein n=1 Tax=Echinostoma capron... [more]
H2KRW5_CLOSI1.040e-3357.45Phosphoglucomutase n=5 Tax=Opisthorchiidae TaxID=6... [more]
A0A485LAK5_9STRA4.550e-3358.59Aste57867_18499 protein n=1 Tax=Aphanomyces stella... [more]
A0A8E0S1S3_9TREM4.570e-3357.58Phosphoglucomutase n=1 Tax=Fasciolopsis buski TaxI... [more]
A0A8C7MW35_ONCKI5.330e-3361.05Uncharacterized protein n=2 Tax=Oncorhynchus kisut... [more]
A0A504Z3Z6_FASGI6.310e-3357.58Phosphoglucomutase n=3 Tax=Fasciola TaxID=6191 Rep... [more]
A0A2P6NL98_9EUKA8.250e-3355.56Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
A0A1B6K757_9HEMI1.390e-3259.18Uncharacterized protein (Fragment) n=1 Tax=Homalod... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13769contigH-canaliculatus_F_contig13769:1736..2752 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score155.6
Seed ortholog evalue1.2e-35
Seed eggNOG ortholog2880.D7G3G9
Preferred nameMSC7
KEGG rclassRC00047,RC00071,RC00080,RC00186,RC00218,RC00242,RC00816,RC01500
KEGG koko:K00128,ko:K10661
KEGG ReactionR00264,R00631,R00710,R00904,R01752,R01986,R02549,R02678,R02940,R02957,R03283,R03869,R04065,R04506,R04903,R05050,R05237,R05238,R05286,R06366,R08146
KEGG Pathwayko00010,ko00053,ko00071,ko00280,ko00310,ko00330,ko00340,ko00380,ko00410,ko00561,ko00620,ko00625,ko00903,ko00981,ko01100,ko01110,ko01120,ko01130,ko04141,map00010,map00053,map00071,map00280,map00310,map00330,map00340,map00380,map00410,map00561,map00620,map00625,map00903,map00981,map01100,map01110,map01120,map01130,map04141
KEGG ModuleM00135
GOsGO:0000003,GO:0000280,GO:0003674,GO:0003824,GO:0004029,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006139,GO:0006259,GO:0006310,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0008150,GO:0008152,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016491,GO:0016620,GO:0016903,GO:0022402,GO:0022414,GO:0031224,GO:0034641,GO:0035825,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0046483,GO:0048285,GO:0051321,GO:0055114,GO:0061982,GO:0071704,GO:0071840,GO:0090304,GO:0140013,GO:1901360,GO:1903046
EggNOG free text desc.aldehyde dehydrogenase (NAD) activity
EggNOG OGsCOG1012@1,COG1109@1,KOG1220@2759,KOG2454@2759
EC1.2.1.3,2.3.2.27
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size297
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929116.2745838-CDS-H-canaliculatus_F_contig13769:1735..18671622929116.2745838-CDS-H-canaliculatus_F_contig13769:1735..1867Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13769 1736..1867 -
1696845685.1383317-CDS-H-canaliculatus_F_contig13769:1735..18671696845685.1383317-CDS-H-canaliculatus_F_contig13769:1735..1867Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13769 1736..1867 -
1622929116.285024-CDS-H-canaliculatus_F_contig13769:2587..27521622929116.285024-CDS-H-canaliculatus_F_contig13769:2587..2752Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13769 2588..2752 -
1696845685.1529212-CDS-H-canaliculatus_F_contig13769:2587..27521696845685.1529212-CDS-H-canaliculatus_F_contig13769:2587..2752Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13769 2588..2752 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13769.3004.1prot_H-canaliculatus_F_contig13769.3004.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13769 1736..2752 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13769.3004.1

>prot_H-canaliculatus_F_contig13769.3004.1 ID=prot_H-canaliculatus_F_contig13769.3004.1|Name=mRNA_H-canaliculatus_F_contig13769.3004.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=99bp
FVVANDPDGDRLAAAERQPSGEWRVFSGNEIGTLLGLWQWEEWRRTHPDE
DASNAVMIASTVSSNMLSAVARQEGFTFEETLPGFKWMGHRGQQLKVGG
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mRNA from alignment at H-canaliculatus_F_contig13769:1736..2752-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13769.3004.1 ID=mRNA_H-canaliculatus_F_contig13769.3004.1|Name=mRNA_H-canaliculatus_F_contig13769.3004.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1017bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13769:1736..2752- (Hapterophycus canaliculatus Oshoro5f female)
TTCGTGGTGGCCAACGATCCAGACGGAGACAGGCTAGCCGCGGCCGAGCG
GCAGCCCTCGGGCGAGTGGCGCGTCTTCTCGGGGAACGAGATCGGGACGC
TTCTGGGACTGTGGCAGTGGGAGGAGTGGCGGAGGACGCACCCCGACGAG
GATGCCTCGAACGCGGTGAGGGGATGGGTTGGTGGCGACCATGAGAAAAG
GAGACAGACAGACAGACAGACAGACAAACAGACAGACAGGCAGACAGACA
GAGACAGGCGCGGACGAGGGGTGTCTACGCGCTTCGCGTGTTGATCGTGA
CCGTCTTTTTGTGCGTCGCGGGAGCTACGGCAGCAGGAGCACTAGCGGCA
GCTGGATATTGGGGTTGCCTTGGTGCTCTCTTGGAGGTTCCGGTGCTATT
CGTAGGTTAGCTGGGTTGGTGAGTGGGACGGGGAGACGGGGCTGGGCGAT
GGATCGCCCCGTGTCGAGAACGCCTCCGGGGGCCGAACACGCCGTTGGTG
CCGCGGTCGGGGGAAGAAGAAGTCTGGGTGGTGGTGCCCGTGCGACGGTA
TGGTGGAGGATGGCGTGGACGACTCAGTCGTAAAAGCTCGCTCTTTTGCG
GCTCCGCGAGACGAGAATGAGGAGCAAAACAGCATTTCCCTGTCTTTGGG
CGGAAGGTCCCTCCGTGGACCCACCCTTCCGTCGGCAGGCAGTTCCCTCC
AGCGGGGTCGGCGACGTCCTCAGGCCTCTCCCGCCGCGCGCTGTATGTTT
CGGGACGTTTTGGGATCATCGACGCCTTGCGGATGGCCTCAAGACCACCC
AGGCCCTCACCCCCCGCCCCTGCCCCCGCCCCTGCCGCCTCCTCCGCTTG
CCGGGGTTGCCATGATGATTCCGCGACCGCGTTAGGTGATGATCGCCAGC
ACTGTTTCGTCGAACATGCTGTCGGCGGTGGCGAGGCAGGAAGGGTTCAC
CTTCGAGGAAACGCTACCGGGTTTCAAGTGGATGGGGCACCGCGGTCAGC
AGCTCAAGGTGGGTGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13769:1736..2752-

>mRNA_H-canaliculatus_F_contig13769.3004.1 ID=mRNA_H-canaliculatus_F_contig13769.3004.1|Name=mRNA_H-canaliculatus_F_contig13769.3004.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=594bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13769:1736..2752- (Hapterophycus canaliculatus Oshoro5f female)
TTCGTGGTGGCCAACGATCCAGACGGAGACAGGCTAGCCGCGGCCGAGCG
GCAGCCCTCGGGCGAGTGGCGCGTCTTCTCGGGGAACGAGATCGGGACGC
TTCTGGGACTGTGGCAGTGGGAGGAGTGGCGGAGGACGCACCCCGACGAG
GATGCCTCGAACGCGTTCGTGGTGGCCAACGATCCAGACGGAGACAGGCT
AGCCGCGGCCGAGCGGCAGCCCTCGGGCGAGTGGCGCGTCTTCTCGGGGA
ACGAGATCGGGACGCTTCTGGGACTGTGGCAGTGGGAGGAGTGGCGGAGG
ACGCACCCCGACGAGGATGCCTCGAACGCGGTGATGATCGCCAGCACTGT
TTCGTCGAACATGCTGTCGGCGGTGGCGAGGCAGGAAGGGTTCACCTTCG
AGGAAACGCTACCGGGTTTCAAGTGGATGGGGCACCGCGGTCAGCAGCTC
AAGGTGGGTGGGGTGATGATCGCCAGCACTGTTTCGTCGAACATGCTGTC
GGCGGTGGCGAGGCAGGAAGGGTTCACCTTCGAGGAAACGCTACCGGGTT
TCAAGTGGATGGGGCACCGCGGTCAGCAGCTCAAGGTGGGTGGG
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