mRNA_H-canaliculatus_F_contig13765.3003.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13765.3003.1
Unique NamemRNA_H-canaliculatus_F_contig13765.3003.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13765.3003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13765contigH-canaliculatus_F_contig13765:1904..2249 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size346
Cds size324
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929116.2220335-UTR-H-canaliculatus_F_contig13765:1903..19251622929116.2220335-UTR-H-canaliculatus_F_contig13765:1903..1925Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13765 1904..1925 +
1696845685.1098921-UTR-H-canaliculatus_F_contig13765:1903..19251696845685.1098921-UTR-H-canaliculatus_F_contig13765:1903..1925Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13765 1904..1925 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929116.237116-CDS-H-canaliculatus_F_contig13765:1925..22491622929116.237116-CDS-H-canaliculatus_F_contig13765:1925..2249Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13765 1926..2249 +
1696845685.1233292-CDS-H-canaliculatus_F_contig13765:1925..22491696845685.1233292-CDS-H-canaliculatus_F_contig13765:1925..2249Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13765 1926..2249 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13765.3003.1prot_H-canaliculatus_F_contig13765.3003.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13765 1926..2249 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13765.3003.1

>prot_H-canaliculatus_F_contig13765.3003.1 ID=prot_H-canaliculatus_F_contig13765.3003.1|Name=mRNA_H-canaliculatus_F_contig13765.3003.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=108bp
MKILLASRDEGAGVFSSWRLFLLPAWLRFQPQISTIVFYDRGGPVCGMLG
CVMRLDRSSSVEDASTTKMTVAAAAGARKASVRQTKYSNQHEPSRHNERT
TQTTQTNM
back to top

mRNA from alignment at H-canaliculatus_F_contig13765:1904..2249+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13765.3003.1 ID=mRNA_H-canaliculatus_F_contig13765.3003.1|Name=mRNA_H-canaliculatus_F_contig13765.3003.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=346bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13765:1904..2249+ (Hapterophycus canaliculatus Oshoro5f female)
AGGCATTTTGGACGTGTGCTGCATGAAGATTTTGTTGGCTTCTCGCGATG
AAGGGGCGGGTGTTTTTTCTTCGTGGAGGTTGTTTTTGCTCCCGGCCTGG
TTACGTTTTCAGCCACAGATTTCCACCATTGTTTTTTATGACCGGGGAGG
ACCAGTGTGTGGGATGCTTGGGTGCGTGATGAGGTTAGACCGATCTTCAA
GCGTGGAGGACGCATCGACAACAAAAATGACAGTTGCAGCAGCAGCAGGA
GCGAGGAAAGCTTCCGTAAGGCAAACGAAATACTCAAATCAACACGAGCC
GAGCAGACACAACGAAAGGACAACACAGACAACACAGACAAACATG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13765:1904..2249+

>mRNA_H-canaliculatus_F_contig13765.3003.1 ID=mRNA_H-canaliculatus_F_contig13765.3003.1|Name=mRNA_H-canaliculatus_F_contig13765.3003.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=648bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13765:1904..2249+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAAGATTTTGTTGGCTTCTCGCGATGAAGGGGCGGGTGTTTTTTCTTC
GTGGAGGTTGTTTTTGCTCCCGGCCTGGTTACGTTTTCAGCCACAGATTT
CCACCATTGTTTTTTATGACCGGGGAGGACCAGTGTGTGGGATGCTTGGG
TGCGTGATGAGGTTAGACCGATCTTCAAGCGTGGAGGACGCATCGACAAC
AAAAATGACAGTTGCAGCAGCAGCAGGAGCGAGGAAAGCTTCCGTAAGGC
AAACGAAATACTCAAATCAACACGAGCCGAGCAGACACAACGAAAGGACA
ACACAGACAACACAGACAAACATGATGAAGATTTTGTTGGCTTCTCGCGA
TGAAGGGGCGGGTGTTTTTTCTTCGTGGAGGTTGTTTTTGCTCCCGGCCT
GGTTACGTTTTCAGCCACAGATTTCCACCATTGTTTTTTATGACCGGGGA
GGACCAGTGTGTGGGATGCTTGGGTGCGTGATGAGGTTAGACCGATCTTC
AAGCGTGGAGGACGCATCGACAACAAAAATGACAGTTGCAGCAGCAGCAG
GAGCGAGGAAAGCTTCCGTAAGGCAAACGAAATACTCAAATCAACACGAG
CCGAGCAGACACAACGAAAGGACAACACAGACAACACAGACAAACATG
back to top