mRNA_H-canaliculatus_F_contig13754.2997.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13754.2997.1
Unique NamemRNA_H-canaliculatus_F_contig13754.2997.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13754.2997.1 vs. uniprot
Match: A0A7S2CGS5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CGS5_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 3.320e-15
Identity = 30/34 (88.24%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 DLGSTELYPQVLKHNCNGRFLVVCGDGEYIIYTS 102
            DLGSTE+YPQ +KHNCNGRF+VVCGDGEYIIYTS
Sbjct:   44 DLGSTEIYPQSVKHNCNGRFIVVCGDGEYIIYTS 77
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BLAST of mRNA_H-canaliculatus_F_contig13754.2997.1 vs. uniprot
Match: A0A7S2DQ04_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DQ04_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 8.960e-14
Identity = 29/34 (85.29%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 DLGSTELYPQVLKHNCNGRFLVVCGDGEYIIYTS 102
            DLGSTE++PQ +KHNCNGRF+VVCGDGEYIIYTS
Sbjct:  264 DLGSTEIFPQCIKHNCNGRFIVVCGDGEYIIYTS 297
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BLAST of mRNA_H-canaliculatus_F_contig13754.2997.1 vs. uniprot
Match: A0A835YRX4_9STRA (Coatomer WD associated region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRX4_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.280e-13
Identity = 27/34 (79.41%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 DLGSTELYPQVLKHNCNGRFLVVCGDGEYIIYTS 102
            DLG+TE++PQ L+HNCNGRFLVVCGDGEY++YTS
Sbjct:  349 DLGATEIFPQALRHNCNGRFLVVCGDGEYVVYTS 382
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BLAST of mRNA_H-canaliculatus_F_contig13754.2997.1 vs. uniprot
Match: A0A4D9D3N3_9STRA (Coatomer_WDAD domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3N3_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 3.110e-13
Identity = 29/34 (85.29%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 DLGSTELYPQVLKHNCNGRFLVVCGDGEYIIYTS 102
            DLGSTE++PQ L HNCNGRF+VVCGDGEYIIYTS
Sbjct:  364 DLGSTEIFPQTLAHNCNGRFVVVCGDGEYIIYTS 397
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BLAST of mRNA_H-canaliculatus_F_contig13754.2997.1 vs. uniprot
Match: A0A1E7FWK9_9STRA (Coatomer subunit beta' n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FWK9_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 4.260e-13
Identity = 29/34 (85.29%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 DLGSTELYPQVLKHNCNGRFLVVCGDGEYIIYTS 102
            DLGS ELYPQ+LKHNCNGRF+ VCGDGE+IIYTS
Sbjct:  350 DLGSCELYPQMLKHNCNGRFVAVCGDGEFIIYTS 383
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BLAST of mRNA_H-canaliculatus_F_contig13754.2997.1 vs. uniprot
Match: F0YGS9_AURAN (Coatomer subunit beta' n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGS9_AURAN)

HSP 1 Score: 69.7 bits (169), Expect = 5.820e-13
Identity = 28/34 (82.35%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 DLGSTELYPQVLKHNCNGRFLVVCGDGEYIIYTS 102
            D+GS E++PQV++HNCNGRFLVVCGDGEYIIYTS
Sbjct:  352 DMGSCEIFPQVVQHNCNGRFLVVCGDGEYIIYTS 385
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BLAST of mRNA_H-canaliculatus_F_contig13754.2997.1 vs. uniprot
Match: A0A7S2N5K4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N5K4_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 5.840e-13
Identity = 28/34 (82.35%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 DLGSTELYPQVLKHNCNGRFLVVCGDGEYIIYTS 102
            DLGS ELYPQ+LKHNCNGRF+ VCGDGE+IIYT+
Sbjct:  347 DLGSCELYPQILKHNCNGRFVAVCGDGEFIIYTA 380
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BLAST of mRNA_H-canaliculatus_F_contig13754.2997.1 vs. uniprot
Match: A0A7S2SR98_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SR98_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 7.940e-13
Identity = 28/34 (82.35%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 DLGSTELYPQVLKHNCNGRFLVVCGDGEYIIYTS 102
            DLGSTE++PQ ++HNCNGRF+VVCGDGEYIIYTS
Sbjct:  371 DLGSTEVFPQQVQHNCNGRFIVVCGDGEYIIYTS 404
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BLAST of mRNA_H-canaliculatus_F_contig13754.2997.1 vs. uniprot
Match: A0A7S3VAZ1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VAZ1_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.090e-12
Identity = 28/34 (82.35%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 DLGSTELYPQVLKHNCNGRFLVVCGDGEYIIYTS 102
            DLG+ ELYPQ+LKHNCNGRF+ VCGDGE+IIYTS
Sbjct:  264 DLGACELYPQMLKHNCNGRFVAVCGDGEFIIYTS 297
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BLAST of mRNA_H-canaliculatus_F_contig13754.2997.1 vs. uniprot
Match: A0A7S4RXN3_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RXN3_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.090e-12
Identity = 28/34 (82.35%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 DLGSTELYPQVLKHNCNGRFLVVCGDGEYIIYTS 102
            DLGS ELYPQ+LKHNCNGRF+ VCGDGE+IIYT+
Sbjct:  132 DLGSCELYPQMLKHNCNGRFVAVCGDGEFIIYTA 165
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13754.2997.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2CGS5_9STRA3.320e-1588.24Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2DQ04_9STRA8.960e-1485.29Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A835YRX4_9STRA2.280e-1379.41Coatomer WD associated region-domain-containing pr... [more]
A0A4D9D3N3_9STRA3.110e-1385.29Coatomer_WDAD domain-containing protein n=2 Tax=Mo... [more]
A0A1E7FWK9_9STRA4.260e-1385.29Coatomer subunit beta' n=1 Tax=Fragilariopsis cyli... [more]
F0YGS9_AURAN5.820e-1382.35Coatomer subunit beta' n=1 Tax=Aureococcus anophag... [more]
A0A7S2N5K4_9STRA5.840e-1382.35Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A7S2SR98_9STRA7.940e-1382.35Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S3VAZ1_9STRA1.090e-1282.35Hypothetical protein (Fragment) n=1 Tax=Chaetocero... [more]
A0A7S4RXN3_9STRA1.090e-1282.35Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13754contigH-canaliculatus_F_contig13754:767..868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue4.6e-11
Seed eggNOG ortholog44056.XP_009039569.1
KEGG koko:K17302
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005798,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0006891,GO:0008104,GO:0008150,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030117,GO:0030120,GO:0030126,GO:0030135,GO:0030137,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0031090,GO:0031410,GO:0031982,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098796,GO:0098805
EggNOG free text desc.The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
EggNOG OGsKOG0276@1,KOG0276@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04147
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size102
Cds size102
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929115.4254727-CDS-H-canaliculatus_F_contig13754:766..8681622929115.4254727-CDS-H-canaliculatus_F_contig13754:766..868Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13754 767..868 +
1696845684.8047404-CDS-H-canaliculatus_F_contig13754:766..8681696845684.8047404-CDS-H-canaliculatus_F_contig13754:766..868Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13754 767..868 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13754.2997.1prot_H-canaliculatus_F_contig13754.2997.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13754 767..868 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13754.2997.1

>prot_H-canaliculatus_F_contig13754.2997.1 ID=prot_H-canaliculatus_F_contig13754.2997.1|Name=mRNA_H-canaliculatus_F_contig13754.2997.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=34bp
DLGSTELYPQVLKHNCNGRFLVVCGDGEYIIYTS
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mRNA from alignment at H-canaliculatus_F_contig13754:767..868+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13754.2997.1 ID=mRNA_H-canaliculatus_F_contig13754.2997.1|Name=mRNA_H-canaliculatus_F_contig13754.2997.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=102bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13754:767..868+ (Hapterophycus canaliculatus Oshoro5f female)
GACCTCGGCTCCACCGAGCTCTACCCTCAGGTTCTCAAGCACAACTGCAA
CGGCAGGTTCCTGGTGGTCTGCGGGGACGGGGAGTACATCATCTACACCT
CT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13754:767..868+

>mRNA_H-canaliculatus_F_contig13754.2997.1 ID=mRNA_H-canaliculatus_F_contig13754.2997.1|Name=mRNA_H-canaliculatus_F_contig13754.2997.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=204bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13754:767..868+ (Hapterophycus canaliculatus Oshoro5f female)
GACCTCGGCTCCACCGAGCTCTACCCTCAGGTTCTCAAGCACAACTGCAA
CGGCAGGTTCCTGGTGGTCTGCGGGGACGGGGAGTACATCATCTACACCT
CTGACCTCGGCTCCACCGAGCTCTACCCTCAGGTTCTCAAGCACAACTGC
AACGGCAGGTTCCTGGTGGTCTGCGGGGACGGGGAGTACATCATCTACAC
CTCT
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