mRNA_H-canaliculatus_F_contig13750.2995.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13750.2995.1
Unique NamemRNA_H-canaliculatus_F_contig13750.2995.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13750.2995.1 vs. uniprot
Match: D8LMW1_ECTSI (VASt domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW1_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 8.760e-40
Identity = 94/157 (59.87%), Postives = 102/157 (64.97%), Query Frame = 1 
Query:  736 KAGQGRRSSKLWNMMRWDGGVQAGEE-----DAEADRKAMEKAIAAGGNNHAEVATAEFDVSVKEFYERFVADDAPYGLPEFHMSRGDWEASSFFCFLSVDAGEWQQXXXXXXXXXXXXXXXXXXKTKGG----------GEGGVTRAIRFKTPLHV 1161
            KAG  R+ SKLWNMMRWD G +AG       D EADRKAME+AI+AGG++HAEVATAEFDVSVKEFYERFVADDAPY LP+FHMSRGDWE         VDAGEWQ                    TKG           G GGVTRAIRFKTPLH+
Sbjct:  546 KAGLVRQGSKLWNMMRWDSGGRAGGAGDGGVDPEADRKAMEEAISAGGDSHAEVATAEFDVSVKEFYERFVADDAPYSLPDFHMSRGDWE---------VDAGEWQHTTKEGEGGGGAAG-----STKGDXXXLRGPRPPGGGGVTRAIRFKTPLHI 688
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BLAST of mRNA_H-canaliculatus_F_contig13750.2995.1 vs. uniprot
Match: A0A6H5KHE3_9PHAE (VASt domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE3_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 1.310e-36
Identity = 92/167 (55.09%), Postives = 100/167 (59.88%), Query Frame = 1 
Query:  736 KAGQGRRSSKLWNMMRWDGGVQAGEE-----DAEADRKAMEKAIAAGGNNHAEVATAEFDVSVKEFYERFVADDAPYGLPEFHMSRGDWEASSFFCFLSVDAGEWQQXXXXXXXXXXXXXXXXXXKTKGGGEGG--------------------VTRAIRFKTPLHV 1161
            KAG  R+ SKLWNMMRWD G +AG       D EADRKAME+AI+AGG++HAEVATAEFDVSVKEFYERFVADDAPY LP+FHMSRGDWE         VDA EWQQ                     GGG  G                    VTRAIRFKTPLH+
Sbjct:  540 KAGLVRQGSKLWNMMRWDSGGRAGGAGEGGGDPEADRKAMEEAISAGGDSHAEVATAEFDVSVKEFYERFVADDAPYSLPDFHMSRGDWE---------VDASEWQQTTEEGEG--------------GGGATGSTKXXXXXXXXXXXXXXXXXVTRAIRFKTPLHI 683
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13750.2995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMW1_ECTSI8.760e-4059.87VASt domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KHE3_9PHAE1.310e-3655.09VASt domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13750contigH-canaliculatus_F_contig13750:191..2798 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.8
Seed ortholog evalue6.5e-37
Seed eggNOG ortholog2880.D8LMW1
EggNOG free text desc.intracellular sterol transport
EggNOG OGsKOG1032@1,KOG1032@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size1161
Cds size1161
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13750.2995.1prot_H-canaliculatus_F_contig13750.2995.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13750 191..2798 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929115.264232-CDS-H-canaliculatus_F_contig13750:190..3341622929115.264232-CDS-H-canaliculatus_F_contig13750:190..334Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13750 191..334 -
1696845684.7418985-CDS-H-canaliculatus_F_contig13750:190..3341696845684.7418985-CDS-H-canaliculatus_F_contig13750:190..334Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13750 191..334 -
1622929115.2801864-CDS-H-canaliculatus_F_contig13750:1184..13281622929115.2801864-CDS-H-canaliculatus_F_contig13750:1184..1328Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13750 1185..1328 -
1696845684.755198-CDS-H-canaliculatus_F_contig13750:1184..13281696845684.755198-CDS-H-canaliculatus_F_contig13750:1184..1328Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13750 1185..1328 -
1622929115.2921293-CDS-H-canaliculatus_F_contig13750:1925..27981622929115.2921293-CDS-H-canaliculatus_F_contig13750:1925..2798Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13750 1926..2798 -
1696845684.7641046-CDS-H-canaliculatus_F_contig13750:1925..27981696845684.7641046-CDS-H-canaliculatus_F_contig13750:1925..2798Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13750 1926..2798 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13750.2995.1

>prot_H-canaliculatus_F_contig13750.2995.1 ID=prot_H-canaliculatus_F_contig13750.2995.1|Name=mRNA_H-canaliculatus_F_contig13750.2995.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=387bp
STPPPPNRARDARTGGMGGLSSSLPSSPNAAAAAAAAAAAASCFSPSSSP
ITAAARGRSYSMTPASSGNTMARAATTSGAVPPRPTKLGLAFLGPEHDAP
SPPPLPLPPYLHANGGGSIHGHHHQPRQQQQQQQRQQRQRPSPQITAVIT
GAGQAGWGTPEPSYPGLASPDRRGGGGSSSLVAGCAAAAAEESGAISATA
PPLTGGKDTPASGRTENKDGPRQDTREETTEQQQQQQQQRADSAHKAGQG
RRSSKLWNMMRWDGGVQAGEEDAEADRKAMEKAIAAGGNNHAEVATAEFD
VSVKEFYERFVADDAPYGLPEFHMSRGDWEASSFFCFLSVDAGEWQQQQQ
QQQQPTTDAEGEAAAKTKGGGEGGVTRAIRFKTPLHV
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mRNA from alignment at H-canaliculatus_F_contig13750:191..2798-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13750.2995.1 ID=mRNA_H-canaliculatus_F_contig13750.2995.1|Name=mRNA_H-canaliculatus_F_contig13750.2995.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2608bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13750:191..2798- (Hapterophycus canaliculatus Oshoro5f female)
TCCACACCGCCGCCCCCCAATCGGGCCCGCGATGCACGCACCGGGGGGAT
GGGGGGACTATCGTCCTCTCTGCCGTCCTCCCCAAACGCCGCCGCTGCCG
CCGCCGCCGCCGCTGCCGCTGCCTCCTGCTTCTCCCCCTCCTCCTCCCCC
ATCACGGCGGCGGCCAGGGGGAGGTCCTACTCGATGACGCCCGCGTCCAG
TGGCAACACGATGGCGAGGGCGGCGACGACTAGCGGTGCTGTCCCTCCCA
GGCCAACCAAGCTCGGACTCGCCTTCCTGGGCCCCGAGCACGATGCGCCG
TCTCCCCCGCCGTTGCCGCTCCCGCCGTATCTGCACGCGAACGGTGGCGG
GAGCATCCACGGGCACCACCACCAGCCACGGCAGCAGCAGCAGCAGCAGC
AGCGGCAGCAGCGGCAGCGGCCATCGCCGCAGATTACTGCGGTGATAACG
GGGGCGGGGCAAGCGGGATGGGGCACCCCCGAGCCTTCCTATCCTGGTTT
GGCCTCGCCCGACAGGAGGGGTGGCGGCGGTAGCTCCAGCCTTGTCGCCG
GTTGTGCCGCCGCCGCCGCGGAGGAGAGCGGAGCGATCTCCGCGACAGCG
CCGCCCCTGACGGGCGGGAAGGACACCCCGGCCAGCGGCCGCACCGAGAA
CAAGGATGGGCCCCGCCAGGATACGAGAGAAGAGACAACAGAGCAGCAGC
AGCAGCAGCAGCAGCAGAGGGCGGATAGTGCGCACAAGGCTGGCCAAGGA
AGGCGAAGTTCCAAGCTGTGGAACATGATGCGGTGGGACGGCGGAGTGCA
GGCGGGGGAGGAGGACGCGGAGGCAGATCGGAAGGCCATGGAGAAGGCCA
TTGCCGCAGGAGGGAACAACCACGTGAGGGAACGGAGTGCCCTGCGAGTG
GTGGTCTTGTTTTTTCTCTCCGGTCGGTTTGTGTGTGTCTGGACAACGCG
AAGAGCTGTCGCAGGGCTGATGCGCGGTAGAGTGGATCTTGCGGAAGAGA
GCAGCGCAGAGCAGAGCAAAGCGGAGAAGAATCGAGGAGGTGGTTGATGG
GGCCCTGGGTAGGGTCCGAGAGAGCGGTCGTTCCGCGCTGACGGGGGGTG
AAAGAGAGGTAGGATCGGTTCGCTCGTCGAACGCCACCATGACCGAGCCA
AAAGCAAGCTTGGTTTTGATTACGGCCGAGGAAGAACGGCTGCAGTGAAG
GTAGCAGGCAAGATGGGATCCTCTTCGGTTTTTTGAAGAGGAGGTTGAAT
GCGTGAAACAGAACCATCATAGGCTCGAATCACCTAGAAGAGCAGCCGCA
CCGACACCGAGAAGAACCCGACGCAACCAACCAGGCACGAACAAAAACAT
GTACACCCGCAAAAATGTACCAACTCCAGCAAAAGCGGTAACACCAGCAA
CAGCAACAACAACGAGGACGCGGTTTCCACATTCATACATATCTTTTCGT
GCGCCTCTGTGCGATGACAGGCGGAGGTGGCGACGGCCGAGTTCGACGTT
TCGGTGAAGGAGTTCTACGAGAGGTTCGTGGCGGACGACGCACCGTACGG
ACTCCCGGAGTTCCACATGAGCCGAGGAGACTGGGAGGCGAGCTCATTTT
TTTGCTTTCTTTCGGTATCGACTCGGCAGTGGTAAGGCGTGCACTCCTGT
GCGGTTCCAGCTGTGCGGGCCCCCTGCCGGTCCTGTGGTAGCGCTGGTGT
TATCGCTTTTACTTCGTTGCATCATTTCTTCGTGGCGTTTGGCCTCCTCC
CTACATGCCGGTGTCTCGGTTTTTGTCGAGCCTTCGTCTCTCGCGCTCCG
TGTGGTGGGTACATCCACTCGAGGGACCGTGCGGCGAGCGAATGCCCGGT
GGGGAACTCCCGTCGTTTTTTGCATCGTGGCTCCAAAGTCAAGGGGGGCA
GCGTGTTTCCGTCACGGAGTCTCGCGCCCGGTTGATTGTTCTGGTCTGGA
TCGCTGCTGTCGGCGCCGCAATCCATGCAGAGGTCGACGTCTCCGATCGG
TGGTCGCCGGAAAGTGGCGGGATTCTCTCTTGAGGCGCCACCCAAGCCAA
ATTGGTCGAACTAGCATCACACCGAGATTTAGATGCCAGTCGTGGGAGGG
GAATGCTGGAGGAAGAGCGGGAACTCGCATCTTTGAATTCGGCCATCAAG
TCGTCCGGATAATTGTCCGCGAGGGTGGTGAGGCCGGAACGGCAGCGATG
GAGGGTGGTCGTTGGTGATTGTAACACGCCTGCCATGTCGTGCGCCGAAA
AATGTGGCGATGGGCTGGCACTGTGAATGACGTGCGCCCGTGGGTGCGAA
AGATGCCGACGGCGACGATCTCTTCGTGGGGCTGGGTGAACCCCTGACTG
AGACATGTAACAGTGGTATTTGCGGACGCGCTTCACAGTATGCGCTAGAC
CCACGCTCCCGCGACAAAGGCAGAATGTATTGACATGTTTCTGCCTGCGA
TTAACGAATCACAGGTGGATGCTGGCGAGTGGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCCGACAACCGATGCAGAAGGAGAGGCGGCCGCCAAAACGAA
AGGAGGCGGGGAGGGAGGAGTCACCCGTGCCATACGCTTCAAGACACCCT
TGCATGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13750:191..2798-

>mRNA_H-canaliculatus_F_contig13750.2995.1 ID=mRNA_H-canaliculatus_F_contig13750.2995.1|Name=mRNA_H-canaliculatus_F_contig13750.2995.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2322bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13750:191..2798- (Hapterophycus canaliculatus Oshoro5f female)
TCCACACCGCCGCCCCCCAATCGGGCCCGCGATGCACGCACCGGGGGGAT
GGGGGGACTATCGTCCTCTCTGCCGTCCTCCCCAAACGCCGCCGCTGCCG
CCGCCGCCGCCGCTGCCGCTGCCTCCTGCTTCTCCCCCTCCTCCTCCCCC
ATCACGGCGGCGGCCAGGGGGAGGTCCTACTCGATGACGCCCGCGTCCAG
TGGCAACACGATGGCGAGGGCGGCGACGACTAGCGGTGCTGTCCCTCCCA
GGCCAACCAAGCTCGGACTCGCCTTCCTGGGCCCCGAGCACGATGCGCCG
TCTCCCCCGCCGTTGCCGCTCCCGCCGTATCTGCACGCGAACGGTGGCGG
GAGCATCCACGGGCACCACCACCAGCCACGGCAGCAGCAGCAGCAGCAGC
AGCGGCAGCAGCGGCAGCGGCCATCGCCGCAGATTACTGCGGTGATAACG
GGGGCGGGGCAAGCGGGATGGGGCACCCCCGAGCCTTCCTATCCTGGTTT
GGCCTCGCCCGACAGGAGGGGTGGCGGCGGTAGCTCCAGCCTTGTCGCCG
GTTGTGCCGCCGCCGCCGCGGAGGAGAGCGGAGCGATCTCCGCGACAGCG
CCGCCCCTGACGGGCGGGAAGGACACCCCGGCCAGCGGCCGCACCGAGAA
CAAGGATGGGCCCCGCCAGGATACGAGAGAAGAGACAACAGAGCAGCAGC
AGCAGCAGCAGCAGCAGAGGGCGGATAGTGCGCACAAGGCTGGCCAAGGA
AGGCGAAGTTCCAAGCTGTGGAACATGATGCGGTGGGACGGCGGAGTGCA
GGCGGGGGAGGAGGACGCGGAGGCAGATCGGAAGGCCATGGAGAAGGCCA
TTGCCGCAGGAGGGAACAACCACTCCACACCGCCGCCCCCCAATCGGGCC
CGCGATGCACGCACCGGGGGGATGGGGGGACTATCGTCCTCTCTGCCGTC
CTCCCCAAACGCCGCCGCTGCCGCCGCCGCCGCCGCTGCCGCTGCCTCCT
GCTTCTCCCCCTCCTCCTCCCCCATCACGGCGGCGGCCAGGGGGAGGTCC
TACTCGATGACGCCCGCGTCCAGTGGCAACACGATGGCGAGGGCGGCGAC
GACTAGCGGTGCTGTCCCTCCCAGGCCAACCAAGCTCGGACTCGCCTTCC
TGGGCCCCGAGCACGATGCGCCGTCTCCCCCGCCGTTGCCGCTCCCGCCG
TATCTGCACGCGAACGGTGGCGGGAGCATCCACGGGCACCACCACCAGCC
ACGGCAGCAGCAGCAGCAGCAGCAGCGGCAGCAGCGGCAGCGGCCATCGC
CGCAGATTACTGCGGTGATAACGGGGGCGGGGCAAGCGGGATGGGGCACC
CCCGAGCCTTCCTATCCTGGTTTGGCCTCGCCCGACAGGAGGGGTGGCGG
CGGTAGCTCCAGCCTTGTCGCCGGTTGTGCCGCCGCCGCCGCGGAGGAGA
GCGGAGCGATCTCCGCGACAGCGCCGCCCCTGACGGGCGGGAAGGACACC
CCGGCCAGCGGCCGCACCGAGAACAAGGATGGGCCCCGCCAGGATACGAG
AGAAGAGACAACAGAGCAGCAGCAGCAGCAGCAGCAGCAGAGGGCGGATA
GTGCGCACAAGGCTGGCCAAGGAAGGCGAAGTTCCAAGCTGTGGAACATG
ATGCGGTGGGACGGCGGAGTGCAGGCGGGGGAGGAGGACGCGGAGGCAGA
TCGGAAGGCCATGGAGAAGGCCATTGCCGCAGGAGGGAACAACCACGCGG
AGGTGGCGACGGCCGAGTTCGACGTTTCGGTGAAGGAGTTCTACGAGAGG
TTCGTGGCGGACGACGCACCGTACGGACTCCCGGAGTTCCACATGAGCCG
AGGAGACTGGGAGGCGAGCTCATTTTTTTGCTTTCTTTCGGCGGAGGTGG
CGACGGCCGAGTTCGACGTTTCGGTGAAGGAGTTCTACGAGAGGTTCGTG
GCGGACGACGCACCGTACGGACTCCCGGAGTTCCACATGAGCCGAGGAGA
CTGGGAGGCGAGCTCATTTTTTTGCTTTCTTTCGGTGGATGCTGGCGAGT
GGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGACAACCGATGCAGAAGGA
GAGGCGGCCGCCAAAACGAAAGGAGGCGGGGAGGGAGGAGTCACCCGTGC
CATACGCTTCAAGACACCCTTGCATGTGGTGGATGCTGGCGAGTGGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCCGACAACCGATGCAGAAGGAGAGGCG
GCCGCCAAAACGAAAGGAGGCGGGGAGGGAGGAGTCACCCGTGCCATACG
CTTCAAGACACCCTTGCATGTG
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