mRNA_H-canaliculatus_F_contig1375.2994.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1375.2994.1
Unique NamemRNA_H-canaliculatus_F_contig1375.2994.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1375.2994.1 vs. uniprot
Match: D7G9A2_ECTSI (Cellulose synthase (UDP-forming), family GT2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9A2_ECTSI)

HSP 1 Score: 286 bits (733), Expect = 3.350e-78
Identity = 131/212 (61.79%), Postives = 171/212 (80.66%), Query Frame = 3 
Query:    3 IKYLPLCLAMGTCPDEPRSFFMQQYRWCMGSATLVTEPGFWSADLSALHKICFFNGLLYYIATAMLIFLAPIPIMLLIYIKADSVLWYYSGFAVPSILIVSVIMPIWAKQPYGMPVHRVRVIQCYAHLYALKDHLMGTAAAWIPSGGGASRSTSTAYRSSVVLMVTWSTFTTVAIVGGSIWRILELYTWYHFLPAMILAVGNFGLNMSSLYY 638
            IKY+PL LAMG CPDEP+SFFMQQYRWC GS TLV E GFW++ +S   K+CF NGLLYY AT++L+F+AP+PIMLL++++AD VLWY+SGFA+PS++  ++++P+W+KQ YGM  HRV++IQ YAHLYA+KD L+G +A W+PSGG  SR TST Y+SSV LMV WS  ++  I GG +WR + + TWYHF+PAM+ AVG F LNMS+L Y
Sbjct:  956 IKYVPLALAMGICPDEPQSFFMQQYRWCKGSTTLVKEKGFWTSGISKRQKLCFLNGLLYYFATSLLLFMAPLPIMLLVWVEADGVLWYHSGFALPSLIFAAIVLPLWSKQRYGMACHRVKIIQYYAHLYAVKDSLLGLSAPWVPSGG--SRLTSTRYKSSVRLMVVWSFVSSALIFGGCVWR-MTMLTWYHFVPAMVFAVGTFALNMSTLVY 1164
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1375.2994.1 vs. uniprot
Match: A0A6H5K7X7_9PHAE (GT2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7X7_9PHAE)

HSP 1 Score: 280 bits (717), Expect = 9.670e-76
Identity = 130/212 (61.32%), Postives = 168/212 (79.25%), Query Frame = 3 
Query:    3 IKYLPLCLAMGTCPDEPRSFFMQQYRWCMGSATLVTEPGFWSADLSALHKICFFNGLLYYIATAMLIFLAPIPIMLLIYIKADSVLWYYSGFAVPSILIVSVIMPIWAKQPYGMPVHRVRVIQCYAHLYALKDHLMGTAAAWIPSGGGASRSTSTAYRSSVVLMVTWSTFTTVAIVGGSIWRILELYTWYHFLPAMILAVGNFGLNMSSLYY 638
            IKY+PL LAMG CP+EP+SFFMQQYRWC GS TLV E GFW++ +S   K+CF NGLLYY AT++L+F+AP+PIMLL++++AD VLWY+SGFA+PS++   +I+P+W+KQ YGM  HRV++IQ YAHLYA+KD L+G +A W+PSGG  SR TS  Y+SSV LMV WS  ++  I GG  WR + + TWYHF+PAM+ AVG F LNMS+L Y
Sbjct: 1058 IKYVPLALAMGICPNEPQSFFMQQYRWCKGSTTLVREKGFWTSGISKRQKLCFLNGLLYYFATSLLLFMAPLPIMLLVWVEADGVLWYHSGFALPSLIFAGIILPLWSKQRYGMACHRVKIIQYYAHLYAVKDSLLGLSAPWVPSGG--SRLTSARYKSSVRLMVFWSFVSSALIFGGCAWR-MTMLTWYHFVPAMVFAVGTFALNMSTLIY 1266
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1375.2994.1 vs. uniprot
Match: D7G9A6_ECTSI (Cellulose synthase (UDP-forming), family GT2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9A6_ECTSI)

HSP 1 Score: 278 bits (712), Expect = 1.600e-75
Identity = 125/212 (58.96%), Postives = 168/212 (79.25%), Query Frame = 3 
Query:    3 IKYLPLCLAMGTCPDEPRSFFMQQYRWCMGSATLVTEPGFWSADLSALHKICFFNGLLYYIATAMLIFLAPIPIMLLIYIKADSVLWYYSGFAVPSILIVSVIMPIWAKQPYGMPVHRVRVIQCYAHLYALKDHLMGTAAAWIPSGGGASRSTSTAYRSSVVLMVTWSTFTTVAIVGGSIWRILELYTWYHFLPAMILAVGNFGLNMSSLYY 638
            IKYLPL LAMG CP+EP+S+FMQQYRWC GS+TL+ E  FW + +S LHK+CF NG+LYY+ATA+LIF+APIPIMLL++++AD VLWY+SGF +PS++   +IMP+W+KQ YG+   RV+V+QCYAHL+A+KD  MGT A W+PSG G+++  +  Y ++V LM+ W+   T  IVGGS WR + + TWYHFLPA+ +A G+F LNMS+L Y
Sbjct:  917 IKYLPLALAMGICPEEPQSYFMQQYRWCKGSSTLIREKEFWKSGISNLHKLCFLNGMLYYMATALLIFVAPIPIMLLVWMEADGVLWYHSGFVMPSLIFAGIIMPLWSKQRYGLAAQRVKVLQCYAHLFAIKDTFMGTHAPWLPSGSGSAKKRNATYTAAVRLMIVWNLIITSLIVGGSAWR-MTMLTWYHFLPAIAIASGSFVLNMSTLIY 1127
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1375.2994.1 vs. uniprot
Match: D7FP53_ECTSI (Cellulose synthase (UDP-forming), family GT2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP53_ECTSI)

HSP 1 Score: 241 bits (614), Expect = 1.980e-62
Identity = 116/211 (54.98%), Postives = 155/211 (73.46%), Query Frame = 3 
Query:    3 IKYLPLCLAMGTCPDEPRSFFMQQYRWCMGSATLVTEPGFWSADLSALHKICFFNGLLYYIATAMLIFLAPIPIMLLIYIKADSVLWYYSGFAVPSILIVSVIMPIWAKQPYGMPVHRVRVIQCYAHLYALKDHLMGTAAAWIPSGGGAS-RSTSTAYRSSVVLMVTWSTFTTVAIVGGSIWRILELYTWYHFLPAMILAVGNFGLNMSSL 632
            +KY+P  +AMGTCPDEPR+FFMQQYRWCMGS TL++   FW + L+   K+C+ +G+ YY ATA+ IF  P+P MLLI+ K ++VLW+   FAVPSIL   V M  WAKQPY     RV+VIQ Y+HLYALKD +M T   W+P+GGGAS RS+S AY SSV LM+ W+   T+  VGG+ WR+ + + WYHF+P ++L++ NFGL++S+L
Sbjct: 1005 VKYVPQVMAMGTCPDEPRAFFMQQYRWCMGSTTLLSNREFWQSTLTRKQKLCYLSGMFYYSATAITIFTGPLPGMLLIWFKPEAVLWFNISFAVPSILFGYVGMRFWAKQPYDFCCQRVKVIQSYSHLYALKDKIMNTTIPWVPTGGGASSRSSSQAYESSVKLMLVWTMMYTLLTVGGAAWRVTD-FPWYHFVPTILLSILNFGLHISTL 1214
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1375.2994.1 vs. uniprot
Match: D7FQH7_ECTSI (Cellulose synthase (UDP-forming), family GT2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQH7_ECTSI)

HSP 1 Score: 216 bits (549), Expect = 2.780e-55
Identity = 92/154 (59.74%), Postives = 127/154 (82.47%), Query Frame = 3 
Query:    3 IKYLPLCLAMGTCPDEPRSFFMQQYRWCMGSATLVTEPGFWSADLSALHKICFFNGLLYYIATAMLIFLAPIPIMLLIYIKADSVLWYYSGFAVPSILIVSVIMPIWAKQPY---GMPVHRVRVIQCYAHLYALKDHLMGTAAAWIPSGGGASR 455
            ++YLPLCLAMG CPDEPRSFFMQQYRWCMG++TLV +  FW +++S +HK+CFFNG+L+Y+ATA+ +FL P+PI+LLI++KAD VLW+Y GF VP+++   V++P W+KQ      +   R++V+Q YAHL+A+KD +MGT AAW+PSGGGAS+
Sbjct:  644 VRYLPLCLAMGICPDEPRSFFMQQYRWCMGTSTLVLQKEFWQSEISKIHKLCFFNGMLFYLATALFVFLGPMPILLLIWMKADEVLWFYYGFTVPALIYSLVVVPTWSKQDSVFKALTAQRIKVLQSYAHLFAIKDRIMGTVAAWVPSGGGASK 797
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1375.2994.1 vs. uniprot
Match: A0A6A6F490_9PEZI (Glycosyltransferase family 2 protein n=1 Tax=Cercospora zeae-maydis SCOH1-5 TaxID=717836 RepID=A0A6A6F490_9PEZI)

HSP 1 Score: 185 bits (470), Expect = 4.280e-47
Identity = 92/205 (44.88%), Postives = 131/205 (63.90%), Query Frame = 3 
Query:    3 IKYLPLCLAMGTCPDEPRSFFMQQYRWCMGSATLVTEPGFWSADLSALHKICFFNGLLYYIATAMLIFLAPIPIMLLIYIKADSVLWYYSGFAVPSILIVSVIMPIWAKQPYGMPVHRVRVIQCYAHLYALKDHLMGTAAAWIPSGGGASRSTSTAYRSSVVLMVTWSTFTTVAIVGGSIWRILELYTWYHFLPAMILAVGNFGL 617
            ++YLPLCLA G CPD PR+FF QQ RWCMGS TL+T   FW + LS + KIC+ +G++YY A ++ IFL P+P +L+++++ + V +Y   FAVPSIL   + +  W+K  YG  V  + VIQ YA+L A+KD L G A AW+PSG   +   +  YR+  +L   WST T  A++ G+I++IL    WY   P ++L   N  L
Sbjct:  254 VRYLPLCLACGICPDTPRAFFSQQMRWCMGSTTLLTNMDFWRSKLSPIQKICYLSGMMYYSAISLSIFLNPVPGILMLWVRPEYVRYYNLAFAVPSILYSIIAIRCWSKARYGFNVQFIMVIQSYAYLTAIKDRLFGRALAWVPSGDNKAHKNNK-YRNMRILAWCWSTTTLGAVIAGTIYQILRGLPWYDCFPLLLLTAFNLFL 457
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1375.2994.1 vs. uniprot
Match: A0A6G1FUS9_9PEZI (Nucleotide-diphospho-sugar transferase n=1 Tax=Eremomyces bilateralis CBS 781.70 TaxID=1392243 RepID=A0A6G1FUS9_9PEZI)

HSP 1 Score: 186 bits (472), Expect = 1.270e-46
Identity = 91/212 (42.92%), Postives = 133/212 (62.74%), Query Frame = 3 
Query:    3 IKYLPLCLAMGTCPDEPRSFFMQQYRWCMGSATLVTEPGFWSADLSALHKICFFNGLLYYIATAMLIFLAPIPIMLLIYIKADSVLWYYSGFAVPSILIVSVIMPIWAKQPYGMPVHRVRVIQCYAHLYALKDHLMGTAAAWIPSGGGASRSTSTAYRSSVVLMVTWSTFTTVAIVGGSIWRILELYTWYHFLPAMILAVGNFGLNMSSLYY 638
            +KY+P+CLA G CPD PR+FF QQ RW  GS TL+T P FW+++LS + K+C+  GL+YY A ++ IF++PIP +LL++++ +   +Y   FA+PSI+   ++   WAK  YGM V  + VIQ YA+L A+KD L+G    W+PSG   +      YR+  +L  TW+ FT   ++   +WR+     WYH LP +IL+V N  L    L Y
Sbjct:  344 VKYIPICLATGVCPDNPRAFFSQQMRWARGSTTLLTNPHFWTSNLSLMQKVCYLCGLMYYSAISLSIFISPIPGILLLWLRPEYFKYYNLAFAIPSIVYGLLLFRFWAKAKYGMNVQHIMVIQSYAYLTAIKDRLLGINLHWVPSGDAKAHKNHK-YRNMRILCWTWTFFTLGGMISAVVWRLTHDLPWYHTLPLIILSVYNTYLAHYFLLY 554
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1375.2994.1 vs. uniprot
Match: U4LUN8_PYROM (Similar to Cellulose synthase catalytic subunit [UDP-forming] acc. no. P58932 n=1 Tax=Pyronema omphalodes (strain CBS 100304) TaxID=1076935 RepID=U4LUN8_PYROM)

HSP 1 Score: 185 bits (469), Expect = 4.060e-45
Identity = 92/208 (44.23%), Postives = 135/208 (64.90%), Query Frame = 3 
Query:    3 IKYLPLCLAMGTCPDEPRSFFMQQYRWCMGSATLVTEPGFWSADLSALHKICFFNGLLYYIATAMLIFLAPIPIMLLIYIKADSVLWYYSGFAVPSILIVSVIMPIWAKQPYGMPVHRVRVIQCYAHLYALKDHLMGTAAAWIPSGGGASRSTSTAYRSSVVLMVTWSTFTTVAIVGGSIWRILELYTWYHFLPAMILAVGNFGLNMS 626
            +KY+PLCLA G CPD PR+FF QQ RWCMGS TL+T P FWS++L  + KIC+ +G++YY ATA+ IF+ P+P +LL++++ D + +Y   FA+PS+L   + + +WAK  Y + V  +  IQ YA+L A+KD L G A AW PSG   +   +  YR+  +L   W+     A++ G+ + IL  + WYHF+P  IL +  F L +S
Sbjct:  533 LKYVPLCLACGICPDTPRAFFSQQMRWCMGSTTLLTNPDFWSSNLGVIQKICYLSGMMYYSATALSIFINPLPGVLLMWVRPDFLKYYNLAFAIPSLLYSLIAIRLWAKAKYSIHVQYIMAIQQYAYLTAIKDRLFGRALAWAPSGDTKAHKNNK-YRNMRILAWCWTITIEAALISGTTYCILLGWPWYHFVP--ILCLNAFNLFVS 737
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1375.2994.1 vs. uniprot
Match: A0A2I0RT11_9PEZI (Cellulose synthase catalytic subunit [UDP-forming] n=1 Tax=Cercospora zeina TaxID=348901 RepID=A0A2I0RT11_9PEZI)

HSP 1 Score: 186 bits (471), Expect = 4.450e-45
Identity = 92/205 (44.88%), Postives = 131/205 (63.90%), Query Frame = 3 
Query:    3 IKYLPLCLAMGTCPDEPRSFFMQQYRWCMGSATLVTEPGFWSADLSALHKICFFNGLLYYIATAMLIFLAPIPIMLLIYIKADSVLWYYSGFAVPSILIVSVIMPIWAKQPYGMPVHRVRVIQCYAHLYALKDHLMGTAAAWIPSGGGASRSTSTAYRSSVVLMVTWSTFTTVAIVGGSIWRILELYTWYHFLPAMILAVGNFGL 617
            ++YLPLCLA G CPD PR+FF QQ RWCMGS TL+T   FW + LS + KIC+ +G++YY A ++ IFL P+P +L+++++ + V +Y   FAVPSIL   + +  W+K  YG  V  + VIQ YA+L A+KD L G A AW+PSG   +   +  YR+  +L   WST T  A++ G+I++IL    WY   P ++L   N  L
Sbjct:  609 VRYLPLCLACGICPDTPRAFFSQQMRWCMGSTTLLTNVDFWRSKLSPIQKICYLSGMMYYSAISLSIFLNPVPGILMLWVRPEYVRYYNLAFAVPSILYSIIAIRCWSKARYGFNVQFIMVIQSYAYLTAIKDRLFGRALAWVPSGDNKAHKNNK-YRNMRILAWCWSTATLSAVIAGTIYQILRGLPWYDCFPLLLLTAFNLFL 812
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1375.2994.1 vs. uniprot
Match: A0A6A6VRX0_9PEZI (Nucleotide-diphospho-sugar transferase n=1 Tax=Pseudovirgaria hyperparasitica TaxID=470096 RepID=A0A6A6VRX0_9PEZI)

HSP 1 Score: 181 bits (460), Expect = 8.150e-45
Identity = 88/205 (42.93%), Postives = 131/205 (63.90%), Query Frame = 3 
Query:    3 IKYLPLCLAMGTCPDEPRSFFMQQYRWCMGSATLVTEPGFWSADLSALHKICFFNGLLYYIATAMLIFLAPIPIMLLIYIKADSVLWYYSGFAVPSILIVSVIMPIWAKQPYGMPVHRVRVIQCYAHLYALKDHLMGTAAAWIPSGGGASRSTSTAYRSSVVLMVTWSTFTTVAIVGGSIWRILELYTWYHFLPAMILAVGNFGL 617
            +KY+PLCLA G CPD PR+FF QQ RWCMGS TL+T P FW++ LS + KIC+ +G++YY A ++ IFL P+P +L+I+++ + V +Y   FAVPSIL   + + +WAK  YG+ V  V +IQ +A+  A+KD L G A AW+PSG   +   +  YR+  ++   W    + A++ G+ +++L    WY   P + L   NF L
Sbjct:  373 VKYVPLCLACGICPDTPRAFFSQQMRWCMGSTTLLTNPDFWTSPLSLMQKICYLSGMMYYSAISLSIFLNPLPGILMIWVRPEYVRYYNLAFAVPSILYSLLAIRVWAKASYGLNVQFVMMIQSFAYFTAIKDRLFGRALAWVPSGDTKAHKNNK-YRNMRIMAWVWMCSASGALIAGTTYQVLRGMKWYDCFPVLCLTAFNFFL 576
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1375.2994.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9A2_ECTSI3.350e-7861.79Cellulose synthase (UDP-forming), family GT2 n=1 T... [more]
A0A6H5K7X7_9PHAE9.670e-7661.32GT2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7G9A6_ECTSI1.600e-7558.96Cellulose synthase (UDP-forming), family GT2 n=2 T... [more]
D7FP53_ECTSI1.980e-6254.98Cellulose synthase (UDP-forming), family GT2 n=1 T... [more]
D7FQH7_ECTSI2.780e-5559.74Cellulose synthase (UDP-forming), family GT2 n=2 T... [more]
A0A6A6F490_9PEZI4.280e-4744.88Glycosyltransferase family 2 protein n=1 Tax=Cerco... [more]
A0A6G1FUS9_9PEZI1.270e-4642.92Nucleotide-diphospho-sugar transferase n=1 Tax=Ere... [more]
U4LUN8_PYROM4.060e-4544.23Similar to Cellulose synthase catalytic subunit [U... [more]
A0A2I0RT11_9PEZI4.450e-4544.88Cellulose synthase catalytic subunit [UDP-forming]... [more]
A0A6A6VRX0_9PEZI8.150e-4542.93Nucleotide-diphospho-sugar transferase n=1 Tax=Pse... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1375contigH-canaliculatus_F_contig1375:19169..25121 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score274.6
Seed ortholog evalue3.6e-71
Seed eggNOG ortholog2880.D7G9A2
EggNOG free text desc.Glycosyl transferase family 21
EggNOG OGs2C0MJ@1,2S2MV@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons9
Model size2725
Cds size612
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929114.979435-UTR-H-canaliculatus_F_contig1375:19168..191971622929114.979435-UTR-H-canaliculatus_F_contig1375:19168..19197Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1375 19169..19197 +
1696845684.6028128-UTR-H-canaliculatus_F_contig1375:19168..191971696845684.6028128-UTR-H-canaliculatus_F_contig1375:19168..19197Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1375 19169..19197 +
1622929115.1195061-UTR-H-canaliculatus_F_contig1375:22826..231531622929115.1195061-UTR-H-canaliculatus_F_contig1375:22826..23153Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1375 22827..23153 +
1696845684.7003992-UTR-H-canaliculatus_F_contig1375:22826..231531696845684.7003992-UTR-H-canaliculatus_F_contig1375:22826..23153Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1375 22827..23153 +
1622929115.1389637-UTR-H-canaliculatus_F_contig1375:23317..241771622929115.1389637-UTR-H-canaliculatus_F_contig1375:23317..24177Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1375 23318..24177 +
1696845684.7105138-UTR-H-canaliculatus_F_contig1375:23317..241771696845684.7105138-UTR-H-canaliculatus_F_contig1375:23317..24177Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1375 23318..24177 +
1622929115.1562786-UTR-H-canaliculatus_F_contig1375:24197..243941622929115.1562786-UTR-H-canaliculatus_F_contig1375:24197..24394Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1375 24198..24394 +
1696845684.7196243-UTR-H-canaliculatus_F_contig1375:24197..243941696845684.7196243-UTR-H-canaliculatus_F_contig1375:24197..24394Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1375 24198..24394 +
1622929115.1785042-UTR-H-canaliculatus_F_contig1375:24421..251211622929115.1785042-UTR-H-canaliculatus_F_contig1375:24421..25121Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1375 24422..25121 +
1696845684.7285888-UTR-H-canaliculatus_F_contig1375:24421..251211696845684.7285888-UTR-H-canaliculatus_F_contig1375:24421..25121Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1375 24422..25121 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929115.0031202-CDS-H-canaliculatus_F_contig1375:19197..192471622929115.0031202-CDS-H-canaliculatus_F_contig1375:19197..19247Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1375 19198..19247 +
1696845684.6139479-CDS-H-canaliculatus_F_contig1375:19197..192471696845684.6139479-CDS-H-canaliculatus_F_contig1375:19197..19247Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1375 19198..19247 +
1622929115.0158966-CDS-H-canaliculatus_F_contig1375:19999..201171622929115.0158966-CDS-H-canaliculatus_F_contig1375:19999..20117Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1375 20000..20117 +
1696845684.6276045-CDS-H-canaliculatus_F_contig1375:19999..201171696845684.6276045-CDS-H-canaliculatus_F_contig1375:19999..20117Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1375 20000..20117 +
1622929115.0301125-CDS-H-canaliculatus_F_contig1375:20913..210891622929115.0301125-CDS-H-canaliculatus_F_contig1375:20913..21089Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1375 20914..21089 +
1696845684.6418056-CDS-H-canaliculatus_F_contig1375:20913..210891696845684.6418056-CDS-H-canaliculatus_F_contig1375:20913..21089Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1375 20914..21089 +
1622929115.0505292-CDS-H-canaliculatus_F_contig1375:21465..215461622929115.0505292-CDS-H-canaliculatus_F_contig1375:21465..21546Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1375 21466..21546 +
1696845684.6579278-CDS-H-canaliculatus_F_contig1375:21465..215461696845684.6579278-CDS-H-canaliculatus_F_contig1375:21465..21546Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1375 21466..21546 +
1622929115.0635498-CDS-H-canaliculatus_F_contig1375:22011..221041622929115.0635498-CDS-H-canaliculatus_F_contig1375:22011..22104Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1375 22012..22104 +
1696845684.6703086-CDS-H-canaliculatus_F_contig1375:22011..221041696845684.6703086-CDS-H-canaliculatus_F_contig1375:22011..22104Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1375 22012..22104 +
1622929115.090861-CDS-H-canaliculatus_F_contig1375:22732..228261622929115.090861-CDS-H-canaliculatus_F_contig1375:22732..22826Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1375 22733..22826 +
1696845684.6819808-CDS-H-canaliculatus_F_contig1375:22732..228261696845684.6819808-CDS-H-canaliculatus_F_contig1375:22732..22826Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1375 22733..22826 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1375.2994.1prot_H-canaliculatus_F_contig1375.2994.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1375 19198..22826 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1375.2994.1

>prot_H-canaliculatus_F_contig1375.2994.1 ID=prot_H-canaliculatus_F_contig1375.2994.1|Name=mRNA_H-canaliculatus_F_contig1375.2994.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=204bp
MGTCPDEPRSFFMQQYRWCMGSATLVTEPGFWSADLSALHKICFFNGLLY
YIATAMLIFLAPIPIMLLIYIKADSVLWYYSGFAVPSILIVSVIMPIWAK
QPYGMPVHRVRVIQCYAHLYALKDHLMGTAAAWIPSGGGASRSTSTAYRS
SVVLMVTWSTFTTVAIVGGSIWRILELYTWYHFLPAMILAVGNFGLNMSS
LYY*
back to top

mRNA from alignment at H-canaliculatus_F_contig1375:19169..25121+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1375.2994.1 ID=mRNA_H-canaliculatus_F_contig1375.2994.1|Name=mRNA_H-canaliculatus_F_contig1375.2994.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=5953bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1375:19169..25121+ (Hapterophycus canaliculatus Oshoro5f female)
AGATCAAATACCTGCCACTGTGTTTGGCGATGGGTACCTGCCCAGATGAG
CCGCGGAGCTTCTTCATGCAGCAGTACCGGTAAGTCTCGTGTAGCGGGGT
TAGTACTCCAAATGACTGGCTGCGCGATGTTTCAAAAGGACAGCCGCATG
CTCCTCATTGGCCAGTTGGATCACGGTCGGTTTCAGCACCGATCAACATG
TCACTTCGGCTCCGATCGGCGTCGCCCTCTCGGCCCTTCGGCCAATCGTC
AGGTTCCGCATGAATCCACGCGCCCGCAGCCGGTAACAGGTTGCATACAC
ACGCTCGACTGCACCTCGATGGAATGTTGCAGAAGCGCGGAAAATTGCAA
TGTTGCATCTCGGTAACTGTGTTTCACATCATACCTGATTGGCCTTTTCT
GCGCTTCAGATCGGTCTTGTTTAGCCCCCGGGCAAGGGGGATAGAATTCT
TACTCAATCCCGGGCTCTTTAGGAAGTCATGAGGTTTTGTATTTAACATG
TTTTTCATACGCCTAATTTTGGTTTGGGGGCCACTGCTGCTGCTGCGACT
GACTCAGCGGGCTGCTCTAGTTTGTGAAGCTGCCTTGGCTTGCGTTGCCA
CGTGTCGGCCGGTGTTGCCCCTCTTGGTTCGATCAACCCATCTGAGACCT
AGTCTCAGAACAAGTGAATCTAGCGATAGCCCTTCAACCCGCACTTTTTC
TGATTGCTTTATGATAGCGGCAATATAATTAATTTGAAATTATGTGATAG
AGGTGAACCCGTGCAAGAACAAACCAACTAATTATTTCACCGTCAACATA
TCACTTCGTCTGTTTCGATGGATTGTTTCAGTTGGTGCATGGGCAGCGCA
ACTCTGGTAACGGAGCCGGGGTTCTGGAGTGCCGACCTATCCGCTCTCCA
CAAAATCTGCTTCTTCAATGGACTTCTATACTACATCGCCACGGCCATGG
TGTGATGTTTGTTGTTGTTGTTGGCATCGTTGTTACTTTTGCAGTCGTCG
TTTGTCTGCACGAAGTCGCCGTCTAACCGTACAAAATATTTTCTTTGCAG
CTCAGCACCAAGCGTATCCACGCCCAGTCGCGTCGATCGAGCAGCATGTG
CTATCTCTGCGCATCAAGGCTTTGAAACCGTCGTCATTTGTGGGAAATCT
GATCGAGGGGCGGGCGACTCCTCGTTTCTTTTTGCTGCGCTGCACCGATT
CGTAAATACGGCGATCAGCTATCGAACAACGGCTTGGCGTTTGTGAGCAG
CTCAACTTAAAAAACTGTGGCTTTGACCGCCGATCATACACGATTGATAT
TTTTTCGACTGTCGGAAAGGCTATGGGCCTTGCCGGTCCTTGAGGGCTAA
GGTATACATATGTGGATCTGCGCTTTAACCATGTCCTGAAGTTGCTTTCA
TGTCAGTTTGTTTGGCGCAAAACCCGCATACCGGACGATGTACTTCATCA
TTCACAGGCTTGGTGCGACATGTGGTCACCCTCAACAATGTTACAAACAG
ACTTCAAGATCAACAAGCTTTACGTTTTTAAAGAAAACATAACAACACCG
TTAGAACGTTTGTCTTTGGGGTGAACAATCCCCCCCCCCCAGCGCGTCAT
CGTCGGGTTTGTTGCCCTTATTGAGTTCGGCGTTATACGATCGCATAAAT
TCTGCGTTACCCGACGATCGTTGCCACGGCAGCCCCGACACCATCCTCGT
TTCTCGCCGCGCCATTCGCTCCCTCTTCCCGTCCACATAACGCAGCTTAT
TTTTCTGGCACCAATCCCCATCATGCTCCTCATCTACATCAAAGCCGACT
CGGTGTTGTGGTACTACAGCGGCTTCGCGGTACCCTCCATCCTCATAGTT
TCCGTGATCATGCCCATCTGGGCTAAGCAGCCCTACGGGATGCCTGTTCA
TCGGGTCCGGGTCATTCAGTGGTGAGAACAAGAGTGCATGTAGACGTAGC
AAGCGGGGGGTTGAGAGAGCAAGCACTTCATCGGATTTGCTGGTTTCTTG
AGGGCTTTGAGCACGCGCTTGCCCCTCGCAGGCAAGAAAAGGGAGTCATG
GGTAAGAGAAGCGTGCGGACTGCGAATGTGTAGCATGCCTCGGGAGCACC
TCCGACAAATTTCTCCTTTCGGCGAACAGCTTCCTCTCCCTCGCTGTTTT
GTCTGTTCGCCTGTTTCCATCGCTTTGCCTTGCGGCTCAGCCTTCTCGCC
CCCCCTCCTATCTTCCGTCTGCTCTCTTCGCTCACCGCTCTATCACTCCG
ATCGCTCTGCTTCCTCGGCCTCGCTTGCGTGCGGCGCTTCCCGTCAGCTA
CGCCCACCTGTATGCGCTGAAGGACCACCTGATGGGAACAGCGGCAGCCT
GGATACCATCGGGCGGTGGTGCCTCAAGGTTCGCACTTCTACGAGTGTTC
CAGCTCTCGCCCCCGCACCATTCAGCGTTTTCTGAAAGCAGACACGCAGC
GACTGCGCCTCGTTTTTCTCCGCCGTCCCAACACGCAGGAGATCGTTCCT
TATCCACAAACTGTAACGATCGCCGAGAGGGTAGAGACAGTCCTCAGAGG
AGCACACGACTGTTTGGGAACAAAATCGCTCCTGGTGTCCTGTCCCGTTG
CCTTTGTGGTCGTTGTGGTCATCGTTGTTGTTGTCGTCCTCGCTGACGTC
GTTGCCAGTATCGATGCCGCTGTCAGTAGTTCGAGCTGTTCGGTCCCTCT
TGTGCACACAAGGGCCCACGTTCGCGCTTTTATTCATTCTTCGTCAACAT
GGTATGCCATCGCTTCCCACCACCAACATAATCCCGGACGCAACTGTCTT
CTTTCCGTTCCTGCTTCATTCGCACCCTGTATACAATAAGCAGATCGACA
TCCACGGCATACAGGTCTTCGGTGGTGTTAATGGTAACCTGGAGTACCTT
CACGACCGTCGCCATCGTCGGGGGCTCGATATGGAGGTAAAGTTTCCGCA
AAGTCAGCGGTCCAACTCGGAAAGACGGACTTGCAAGATACTGCAGCAAG
GATATTTTCGTTAGGTTACAAAGGGTTCGTAAGAATTGACAACTGGAGTG
GAGCGTCGTCGATCTTTCACGGTCTTTGTAGCAATATTCTGGCGGCATTA
TGCCGTGAAGGCAACGCGCGGGAAGGGCTTCTGTCCCACACTGGTAATCG
TTGAAGCTGATTCCCATATCCTGTTGCCTGCAGTTCCATCCGACGTTGGC
CAGCACGTTGTGACAGAGCTCTGTCATTCGTTGAGAAACGAAACACCTCA
AGGTGAAGACATTTGTATGTCTTCCCTGTGTTGTACTGCCGCGGGCTTCT
GGGCTCTGTACGTAGCCGACTGTGCGAGCAAATACGCTTTTATTCCAGTC
GACAATCTACACCAGTATCGCAAAATCGACCGCCCGCTCCGGCACCCCGC
CTCATTGGTCAAAAGCGCGCGGTTTTTCGCTGATTGAGTAGGATACACCT
CTTCAGGTTGATCTTCTGCCGTTCATATGCCTTGACTTTTCTCAGCCCAT
CTCGCATTTTTGTGGTGCCGTCCTCATCGTTCTCTCGGCTACATCTCGTG
TTTCCTCGAAACAGGATCCTCGAGCTCTACACCTGGTACCACTTCCTCCC
GGCCATGATCCTGGCGGTCGGGAACTTCGGCCTCAACATGAGCAGTCTTT
ACTACTGAGCCAGCGCGCGAGCTCACGACGCAAGAGCGAAGACCTTCCTA
CATTGCCCTCCGAAGACAACGGCGAGGCGTGCGCGCCCGATTGACCTCTG
ACACAGCGGGCAACCTTGGAAACCGGGAGAGGTCTTCAATTGGGACGGAT
CCTTTCCCTGAGGTCTACGAAGCTTTTCGAGTTTTCACGATTTGCGAATC
GGTTTGATTGCATCTGATTGCTTTTGATTGCACACGGTGCTTGCTTGTTT
GCGTAGGGGGAGGGGAACCTCTGGAATACGCCCCCCGTCTTAGCCCCAAT
CGTCCAGGCGTTCCTTAGGCGTGAATCATACAACCGCTTACACGGCACCC
CCAGCCTACTTGTTTGCCCTCTGTAGGATGCCGTAGCCTTGCCGCGGTGG
CGTGGTCCTGCGTACGTACAACTAGCACGTGGAATAATTTCGACGTATCG
CGAGGGTATAACGCAGTATCTCTGCGTTAAACACGGCGGCAGCTGGTAGT
ATGTACGCGTACCGACGTCCTAGTTGGTTGTGAGCTGATTGGAAGACTTT
AGTATTTGTGGTGCAATAGTGTACTTGGGATGAAGTGAGGTCGGGAAACG
GATCTGCACTTCTCATGTACAGAATAAAGGAAGAATACGTCTTCGAAGGT
TTCCTGTGAGTTTAAGTTCTCACAGATAATCCTTGGGTGACAACCCTCTC
TTTTCTCACACCACGTCAACAGAGGCCGTCGAGAAAGGTTGGAAAAGTGC
TAAATGCTTCGTAAACGTCCATTTTCCGCGGCACAACCTTTTGTACAAAG
AATGCGAGCAAGGCTAGCGGCGAGAGTCGGTGAGGATCCGAGCAGCTCCT
TATTTGACGGTCCAGCTCTGTTGATTTTAAGTTCAAGATCTTCGTTCAAA
GTGGAACTCTAGTTCAGCGCGGCCACGTTACGTAATACGCGCTTTAGATG
CCAGGGGTGTAAACATGTTCAAGGCATCCAGTAATTCTTCAAAAGTCCTT
TGCTGTCAGAAGTGTAAAAGTATTGCAAGTTATTCGACGCCACGCATGCT
CTTGTTTGATTAGGAGTGTAACGCTATTCCGAGGTATCCGACGGTACGCC
ACTCGGCTTCCCACTGGTGGCTCCTATAGCGACAATGTATCCCGGAGTTG
ACGGACAGAATGCGTACCGTCGTACTTCAACGTGCTGGCCACGCAGAAGG
GTCAAGCTTTGAGTCTCTCGCAAGCGAGGCAGGGTGTAAAAACGAAGGTT
TTGTTGTATACACGCATATTTATGTTCCTCCACGCGGACGTGAGGATTTC
ATGGTGGTGATGTGTTTTACGGGCACATTTATTTGCTGCACATCTTTTGT
TTTTGTGCGGTCTCCTTCTGAGGAGGCAGGGGGAGATTTTGATGTGTCTG
GCAGCGCGGTGCTTGTTTTGATGGGGTGCACGAAGGCTTCACGTGATCTA
TTTCGCACGCATTCGCCAACTGCGCGGTCGCATTCGAGCGAAATCAAATA
TCGTAGATTTTGTCTAGACCGAAGCATCTCAGATTAATTGTGTTGGCCGG
CTGTCATGCCGTGGGCGATTGCCTCCGCCTTAGGGCTGCTTGTTGGTGGA
TAGGTATATGTAAAGGTGTATTGGAAGTGTATGCTTTGTGGTGTCGGCTT
GCTCTTACAAGCCGTTTTTGCGGTAGTTTCGTTGGGAGTTACGAACTGCC
TTCTGAAAAGGTTCTCTGTAAGTGCGCTGTGACACATGTCTTCGGTGTTC
TACGCATGTTTTCATGCTTGGCGGGTGCATTAGGTGCTGGTGGGTGTATA
AGGAGTTGGTGAGTGCATTAAGGGTTTGGTAGGTATATTGGAACTCAATG
CGTGCCTTCGAATAGAAACACGTCCTTGGCCGTGTGAAAAAAAAAAAAGC
GAAAAGAGGCTGGTGCAGTCATGAGTTGGATTGCGACGAGCGCCGTAATT
TAAATGTGTTCCAACTTTGTTTTTTTGTGTTGGTGTAGACAACTCGAGGA
ATGGCAGCATAGTCTCCAAACACAGCAATTCCGCACGCACGGAATCATTT
TGTGTGAAATACGATATTTTCATGACTCTCGTGCATTATTTCGGAAGTAC
GTGTCAGCGAAGAGGCGACAGCACCAAAGAAGAGATGGAACGGCTCCAGC
CGCGAATTTTTGGTAGTGGTAGGGTGTGCGCTTGCATTTCGCTGCTGCCG
GGGTACCTTAGGATGAAGAACGGCACGCCTAAAGGGGCTAAGGTAGAAAG
CACGAAGGCTTTTGCGGCTTCGTTCAAGCTGAACGTGTTTTTATCGGGTG
CGT
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1375:19169..25121+

>mRNA_H-canaliculatus_F_contig1375.2994.1 ID=mRNA_H-canaliculatus_F_contig1375.2994.1|Name=mRNA_H-canaliculatus_F_contig1375.2994.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1224bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1375:19169..25121+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGTACCTGCCCAGATGAGCCGCGGAGCTTCTTCATGCAGCAGTACCG
ATGGGTACCTGCCCAGATGAGCCGCGGAGCTTCTTCATGCAGCAGTACCG
TTGGTGCATGGGCAGCGCAACTCTGGTAACGGAGCCGGGGTTCTGGAGTG
CCGACCTATCCGCTCTCCACAAAATCTGCTTCTTCAATGGACTTCTATAC
TACATCGCCACGGCCATGTTGGTGCATGGGCAGCGCAACTCTGGTAACGG
AGCCGGGGTTCTGGAGTGCCGACCTATCCGCTCTCCACAAAATCTGCTTC
TTCAATGGACTTCTATACTACATCGCCACGGCCATGCTTATTTTTCTGGC
ACCAATCCCCATCATGCTCCTCATCTACATCAAAGCCGACTCGGTGTTGT
GGTACTACAGCGGCTTCGCGGTACCCTCCATCCTCATAGTTTCCGTGATC
ATGCCCATCTGGGCTAAGCAGCCCTACGGGATGCCTGTTCATCGGGTCCG
GGTCATTCAGTGCTTATTTTTCTGGCACCAATCCCCATCATGCTCCTCAT
CTACATCAAAGCCGACTCGGTGTTGTGGTACTACAGCGGCTTCGCGGTAC
CCTCCATCCTCATAGTTTCCGTGATCATGCCCATCTGGGCTAAGCAGCCC
TACGGGATGCCTGTTCATCGGGTCCGGGTCATTCAGTGCTACGCCCACCT
GTATGCGCTGAAGGACCACCTGATGGGAACAGCGGCAGCCTGGATACCAT
CGGGCGGTGGTGCCTCAAGCTACGCCCACCTGTATGCGCTGAAGGACCAC
CTGATGGGAACAGCGGCAGCCTGGATACCATCGGGCGGTGGTGCCTCAAG
ATCGACATCCACGGCATACAGGTCTTCGGTGGTGTTAATGGTAACCTGGA
GTACCTTCACGACCGTCGCCATCGTCGGGGGCTCGATATGGAGATCGACA
TCCACGGCATACAGGTCTTCGGTGGTGTTAATGGTAACCTGGAGTACCTT
CACGACCGTCGCCATCGTCGGGGGCTCGATATGGAGGATCCTCGAGCTCT
ACACCTGGTACCACTTCCTCCCGGCCATGATCCTGGCGGTCGGGAACTTC
GGCCTCAACATGAGCAGTCTTTACTACTGAGATCCTCGAGCTCTACACCT
GGTACCACTTCCTCCCGGCCATGATCCTGGCGGTCGGGAACTTCGGCCTC
AACATGAGCAGTCTTTACTACTGA
back to top