mRNA_H-canaliculatus_F_contig13738.2987.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13738.2987.1
Unique NamemRNA_H-canaliculatus_F_contig13738.2987.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13738.2987.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13738contigH-canaliculatus_F_contig13738:357..1187 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size831
Cds size555
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13738.2987.1prot_H-canaliculatus_F_contig13738.2987.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13738 428..982 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929114.212876-UTR-H-canaliculatus_F_contig13738:356..4271622929114.212876-UTR-H-canaliculatus_F_contig13738:356..427Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13738 357..427 +
1696845684.2592397-UTR-H-canaliculatus_F_contig13738:356..4271696845684.2592397-UTR-H-canaliculatus_F_contig13738:356..427Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13738 357..427 +
1622929114.2388556-UTR-H-canaliculatus_F_contig13738:982..11871622929114.2388556-UTR-H-canaliculatus_F_contig13738:982..1187Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13738 983..1187 +
1696845684.283438-UTR-H-canaliculatus_F_contig13738:982..11871696845684.283438-UTR-H-canaliculatus_F_contig13738:982..1187Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13738 983..1187 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929114.2252264-CDS-H-canaliculatus_F_contig13738:427..9821622929114.2252264-CDS-H-canaliculatus_F_contig13738:427..982Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13738 428..982 +
1696845684.2689857-CDS-H-canaliculatus_F_contig13738:427..9821696845684.2689857-CDS-H-canaliculatus_F_contig13738:427..982Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13738 428..982 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13738.2987.1

>prot_H-canaliculatus_F_contig13738.2987.1 ID=prot_H-canaliculatus_F_contig13738.2987.1|Name=mRNA_H-canaliculatus_F_contig13738.2987.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=185bp
MVTTMAASGRDCGRKTWVCPVRGCRLCAGEECLGSTALCRMQLTLRATDP
PSPLRRLGLGPASQGCQAYGVSTTACGRITSKPRPALEGFEIEFCCCCDG
DGGGGGNGGRLPCCRHTGKVRRETTCPDQAIVGVISPPPVTGTRTLDTTS
ASTLHFNEKPINTAGTPPGVRRERRGSRLALISK*
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mRNA from alignment at H-canaliculatus_F_contig13738:357..1187+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13738.2987.1 ID=mRNA_H-canaliculatus_F_contig13738.2987.1|Name=mRNA_H-canaliculatus_F_contig13738.2987.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=831bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13738:357..1187+ (Hapterophycus canaliculatus Oshoro5f female)
GAGCTGTCGGAAAGAGAGAGACCGCCTCCCCCCTCGCGCCCCCACGCCTG
GAGTGTCCAGGAGGAAGCCGCATGGTGACAACCATGGCTGCCTCTGGACG
AGACTGCGGCAGGAAGACATGGGTTTGTCCTGTCCGTGGATGCCGCCTGT
GTGCGGGGGAAGAGTGCTTAGGGTCAACCGCTCTTTGCAGGATGCAGCTC
ACCCTTCGTGCGACTGACCCGCCGAGTCCGCTGCGGCGCCTTGGTCTGGG
TCCGGCTTCGCAGGGATGCCAAGCGTATGGCGTTTCGACTACGGCGTGCG
GCAGGATTACGAGTAAACCTCGCCCCGCACTGGAGGGGTTTGAAATCGAG
TTTTGTTGCTGTTGTGATGGTGATGGTGGTGGTGGTGGTAATGGTGGTCG
GTTGCCGTGTTGTCGCCACACAGGGAAAGTAAGACGAGAAACGACCTGTC
CTGACCAAGCCATCGTTGGCGTTATATCTCCACCTCCTGTGACTGGTACG
CGCACCTTGGATACAACTTCTGCTTCGACCCTCCATTTCAACGAAAAACC
TATCAACACCGCAGGAACGCCTCCTGGGGTACGTCGTGAGAGGCGTGGCT
CCAGGCTTGCGTTGATCTCCAAATAATGAGGGTTCATTGATGTGTAAGGT
TGGGACAGAGGCATGAACATAATCATGAAGGAGGCAGAACATGGCTTTGT
GTTTCATATGTTACCTAGATGTGTTATGCCAAGGTACGGTTAGGCTGCCA
TCGGGAAGACGGCAAAATCCGCGTATGCGCATGGCTCTCCAAATCCCTAT
CACGCCATCACTGCCTTATCCCGCACCGATG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13738:357..1187+

>mRNA_H-canaliculatus_F_contig13738.2987.1 ID=mRNA_H-canaliculatus_F_contig13738.2987.1|Name=mRNA_H-canaliculatus_F_contig13738.2987.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1110bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13738:357..1187+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGTGACAACCATGGCTGCCTCTGGACGAGACTGCGGCAGGAAGACATG
GGTTTGTCCTGTCCGTGGATGCCGCCTGTGTGCGGGGGAAGAGTGCTTAG
GGTCAACCGCTCTTTGCAGGATGCAGCTCACCCTTCGTGCGACTGACCCG
CCGAGTCCGCTGCGGCGCCTTGGTCTGGGTCCGGCTTCGCAGGGATGCCA
AGCGTATGGCGTTTCGACTACGGCGTGCGGCAGGATTACGAGTAAACCTC
GCCCCGCACTGGAGGGGTTTGAAATCGAGTTTTGTTGCTGTTGTGATGGT
GATGGTGGTGGTGGTGGTAATGGTGGTCGGTTGCCGTGTTGTCGCCACAC
AGGGAAAGTAAGACGAGAAACGACCTGTCCTGACCAAGCCATCGTTGGCG
TTATATCTCCACCTCCTGTGACTGGTACGCGCACCTTGGATACAACTTCT
GCTTCGACCCTCCATTTCAACGAAAAACCTATCAACACCGCAGGAACGCC
TCCTGGGGTACGTCGTGAGAGGCGTGGCTCCAGGCTTGCGTTGATCTCCA
AATAAATGGTGACAACCATGGCTGCCTCTGGACGAGACTGCGGCAGGAAG
ACATGGGTTTGTCCTGTCCGTGGATGCCGCCTGTGTGCGGGGGAAGAGTG
CTTAGGGTCAACCGCTCTTTGCAGGATGCAGCTCACCCTTCGTGCGACTG
ACCCGCCGAGTCCGCTGCGGCGCCTTGGTCTGGGTCCGGCTTCGCAGGGA
TGCCAAGCGTATGGCGTTTCGACTACGGCGTGCGGCAGGATTACGAGTAA
ACCTCGCCCCGCACTGGAGGGGTTTGAAATCGAGTTTTGTTGCTGTTGTG
ATGGTGATGGTGGTGGTGGTGGTAATGGTGGTCGGTTGCCGTGTTGTCGC
CACACAGGGAAAGTAAGACGAGAAACGACCTGTCCTGACCAAGCCATCGT
TGGCGTTATATCTCCACCTCCTGTGACTGGTACGCGCACCTTGGATACAA
CTTCTGCTTCGACCCTCCATTTCAACGAAAAACCTATCAACACCGCAGGA
ACGCCTCCTGGGGTACGTCGTGAGAGGCGTGGCTCCAGGCTTGCGTTGAT
CTCCAAATAA
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