mRNA_H-canaliculatus_F_contig1372.2978.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1372.2978.1
Unique NamemRNA_H-canaliculatus_F_contig1372.2978.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig1372.2978.1 vs. uniprot
Match: D7FZW7_ECTSI (DUF2470 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW7_ECTSI)

HSP 1 Score: 499 bits (1284), Expect = 8.660e-169
Identity = 257/299 (85.95%), Postives = 275/299 (91.97%), Query Frame = 1
Query: 1096 MEASGEDTEVVAEKKEVA-GHSPPQAKGHGAGPGPKRSPEQEALAAKIQEHQQEAARLSHTEEVRNLMEYSTGFGVLSTNSKSLDGYPSGSVVGFSLDDKGRPLFAFSSMSSHTGDLGDDSRASLTVTAANFKGAADGRVSLIGDVNRVPEEDLPSVREMYKKKHPNAYWVDFGDFSLMRMDTIKAMRFIGGFAMAGQIEPEDYLNASPDPVAEFSTPISKHMNDDHSETTQAMIKHYITG-VEVTSAQISAVDRLGMYVVVGMPDGQSGKLRLPFPRPAESRKDVKNLIVEMTQAAMA 1986
            MEASG+  E   EKKE A GHSPP+A GH AGPGP+RSPEQEALAA+IQEHQQ AARLSHTEEVRNLM+YSTGFGVLSTNS++L+GYPSGSVVGFSLDDKGRPLFAFSSMS+HTGDL  DSR SLTVTAA FKGAADGRVSLIGDVN+VPEEDLPSVREMYKKKHPNAYWVDFGDF LMRMDTIKAMRF+GGFAMAG + PEDYL  +PD VAEFS PISKHMNDDHS+TT+AMI H+ITG VEVTSAQI+AVDRLGMYV+VGMPDGQSGKLRLPFPRPAESRKDVK LIVEMTQAAMA
Sbjct:    1 MEASGDSAESATEKKEEASGHSPPKATGHAAGPGPQRSPEQEALAARIQEHQQAAARLSHTEEVRNLMQYSTGFGVLSTNSRTLEGYPSGSVVGFSLDDKGRPLFAFSSMSAHTGDLAADSRVSLTVTAATFKGAADGRVSLIGDVNKVPEEDLPSVREMYKKKHPNAYWVDFGDFRLMRMDTIKAMRFVGGFAMAGDVNPEDYLTTAPDAVAEFSAPISKHMNDDHSDTTRAMIAHFITGGVEVTSAQITAVDRLGMYVLVGMPDGQSGKLRLPFPRPAESRKDVKTLIVEMTQAAMA 299          
BLAST of mRNA_H-canaliculatus_F_contig1372.2978.1 vs. uniprot
Match: A0A836CG39_9STRA (DUF2470 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG39_9STRA)

HSP 1 Score: 362 bits (928), Expect = 1.030e-115
Identity = 187/286 (65.38%), Postives = 227/286 (79.37%), Query Frame = 1
Query: 1126 VAEKKEVAGHSPPQAKGHGAGPGPKRSPEQEALAAKIQEHQQEAARLSHTEEVRNLMEYSTGFGVLSTNSKSLDGYPSGSVVGFSLDDKGRPLFAFSSMSSHTGDLGDDSRASLTVTAANFKGAADGRVSLIGDVNRVPEEDLPSVREMYKKKHPNAYWVDFGDFSLMRMDTIKAMRFIGGFAMAGQIEPEDYLNASPDPVAEFSTPISKHMNDDHSETTQAMIKHYITG-VEVTSAQISAVDRLGMYVVVGMPDGQSGKLRLPFPRPAESRKDVKNLIVEMTQAA 1980
             A++++  GH P        G GP+R+PEQEAL+A+IQEHQ+ AARL+  EEV+ L+ YSTGFGVLSTNSK L+GYP+GSVVGF LDD GRPLFAFS+MS+HT DLG D RAS+T+ AANFKGA+DGRV+LIGDV RVPE+++ +VR  YK KHPNA+WVDFGDFS  RMDTIKA+RF+GGFAMAG I  EDYL   PDP+A F+ PI  HMN DHS++T AM++HYITG  +V SA +  VDR GM V+V M  G+SGKLRLPFP PA+ RK VK+ IVEMT+AA
Sbjct:    3 TAKEEQPTGHQP-------RGGGPQRTPEQEALSARIQEHQRSAARLTKAEEVKTLVAYSTGFGVLSTNSKKLEGYPNGSVVGFGLDDAGRPLFAFSTMSAHTSDLGADGRASMTIMAANFKGASDGRVTLIGDVGRVPEDEIEAVRTSYKVKHPNAFWVDFGDFSWFRMDTIKAIRFVGGFAMAGDITSEDYLATKPDPIAGFAEPIMTHMNSDHSDSTAAMVEHYITGGAKVDSATLVGVDRKGMNVLVAM-GGESGKLRLPFPSPADDRKAVKDRIVEMTRAA 280          
BLAST of mRNA_H-canaliculatus_F_contig1372.2978.1 vs. uniprot
Match: A0A7S4FQ63_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FQ63_9EUGL)

HSP 1 Score: 315 bits (807), Expect = 1.650e-96
Identity = 160/267 (59.93%), Postives = 205/267 (76.78%), Query Frame = 1
Query: 1195 PKRSPEQEALAAKIQEHQQEAARLSHTEEVRNLMEYSTGFGVLSTNSKSLDGYPSGSVVGFSLDDKGRPLFAFSSMSSHTGDLGDDSRASLTVTAANFKGAADGRVSLIGDVNRVPEEDLPSVREMYKKKHPNAYWVDFGDFSLMRMDTIKAMRFIGGFAMAGQIEPEDYLNASPDPVAEFSTPISKHMNDDHSETTQAMIKHYITGVEVTSAQISAVDRLGMYVVVGMPDGQSGKLRLPFPRPAESRKDVKNLIVEMTQAAMAGAA 1995
            PK S E+  LA  +QEHQ+EAARLSH E+ RN+M+Y TG+GV+STNS+S DGYPSGS+VG++ DDKGRP+F+FS+MSSHT D+  D R SLTVT   FKGAADGRVSL GD+ RVP+E+  +V  MY KKHP+A+WV FGDFS  RM+ IK +R+IGGFA AG I PE+Y   +PD +A F+TP+  HMN DH +   AM+ HY+  ++V +A I  +DRLGM ++V   +GQS KLRLPFPRPA +RK+VK+LIVEMT+A+   AA
Sbjct:  104 PKMSEEEMKLAQALQEHQKEAARLSHAEDARNMMQYGTGYGVISTNSESDDGYPSGSIVGYAPDDKGRPVFSFSTMSSHTQDIQKDPRVSLTVTVEGFKGAADGRVSLTGDLVRVPKEEKEAVAAMYLKKHPDAFWVQFGDFSWWRMENIKTIRYIGGFARAGSITPEEYEATAPDAIAAFATPVMSHMNADHGDANVAMVNHYLP-IQVEAANIVGLDRLGMDMMVTR-EGQSFKLRLPFPRPATNRKEVKDLIVEMTKASAKAAA 368          
BLAST of mRNA_H-canaliculatus_F_contig1372.2978.1 vs. uniprot
Match: A0A7S4EVY0_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4EVY0_CHRCT)

HSP 1 Score: 311 bits (797), Expect = 5.000e-95
Identity = 161/272 (59.19%), Postives = 206/272 (75.74%), Query Frame = 1
Query: 1174 GHGAGPGPKRSPEQEALAAKIQEHQQEAARLSHTEEVRNLMEYSTGFGVLSTNSKSLDGYPSGSVVGFSLDDKGRPLFAFSSMSSHTGDL---GDDSRASLTVTAANFKGAADGRVSLIGDVNRVPEEDLPSVREMYKKKHPNAYWVDFGDFSLMRMDTIKAMRFIGGFAMAGQIEPEDYLNASPDPVAEFSTPISKHMNDDHSETTQAMIKHYITGVEVTSAQISAVDRLGMYVVVGMPDGQSGKLRLPFPRPAESRKDVKNLIVEMTQAA 1980
            GH     P+ S E++A+ AK+  HQQ+AARLS  E+ R+L+ YSTG+GVLST SKSL G+PSGSVVGF++DDKG P+F FS MS H  DL    D + A+LTVTA +FKGAA+GRV+L+G V RVP ++   +RE+Y+ KHPNA+WVDFGDFS  +MD +KA+RF+GGFA AG + PE+Y+ A  DP+  F+ P+ +HMN DHS+ T  M++HYI   EV  A+++A+DRLGM V V    GQS KLRLPFPRPAESRKDVK LIVEMTQA+
Sbjct:   98 GHQVRNAPELSEEEKAVQAKVMAHQQDAARLSKAEDSRSLVAYSTGYGVLSTMSKSLPGFPSGSVVGFAIDDKGLPIFCFSGMSGHAQDLLASPDAAPAALTVTANDFKGAAEGRVTLVGTVRRVPSDEADPLREIYRAKHPNAFWVDFGDFSWFKMDELKAVRFVGGFARAGDMTPEEYMQAEVDPIQAFAKPVMEHMNADHSDATTLMVQHYIGLPEVEDAKVAALDRLGMTVQVTR-KGQSFKLRLPFPRPAESRKDVKTLIVEMTQAS 368          
BLAST of mRNA_H-canaliculatus_F_contig1372.2978.1 vs. uniprot
Match: A0A7S3U682_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3U682_9SPIT)

HSP 1 Score: 293 bits (750), Expect = 2.980e-88
Identity = 157/275 (57.09%), Postives = 205/275 (74.55%), Query Frame = 1
Query: 1174 GHGAGPGPKRSPEQEALAAKIQEHQQEAARLSHTEEVRNLMEYSTGFGVLSTNSKSLDGYPSGSVVGFSLDDKGRPLFAFSSMSSHTGDLGDD---SRASLTVTAANFKGAADGRVSLIGDVNRVP-EEDLPSVREMYKKKHPNAYWVDFGDFSLMRMDTIKAMRFIGGFAMAGQIEPEDYLNASPDPVAEFSTPISKHMNDDHSETTQAMIKHYITGVEVTSAQISAVDRLGMYVVVGMPDGQSGKLRLPFPRPAESRKDVKNLIVEMTQAAMA 1986
            GH     P+ S E++ + A + EHQ+ AARLS  E+ R+L+ YS+G+ VLST SK LDGYPSGS+VGF+ DDKG PLF FS+MSSHT DL  D   ++A+LTVTA  F+GAADGRV+L+GDV RV  EE+L ++R+ Y++KHP+A+WVDFGDFS  RM  +KA+RF+GGFA AG I P+DY  A+ DP+  F+ P+  HMN+DHS++T AM+ HYI   +V  A + A+DRLG  V V    GQ+ KLRLPFPR AE RKDVKNLIV+MTQ +++
Sbjct:   64 GHQVTGAPQLSEEEKKVQAAVMEHQKGAARLSQAEDARSLIGYSSGYAVLSTLSKQLDGYPSGSLVGFATDDKGLPLFCFSAMSSHTQDLMRDPKGAKAALTVTATGFEGAADGRVTLVGDVARVKDEEELVTLRKTYREKHPDAFWVDFGDFSWWRMRELKAVRFVGGFARAGDIAPDDYQAATVDPIQAFAKPVMNHMNEDHSDSTIAMVMHYIGLNQVEKASLVALDRLGFMVQVTRL-GQTFKLRLPFPRAAEDRKDVKNLIVQMTQESLS 337          
BLAST of mRNA_H-canaliculatus_F_contig1372.2978.1 vs. uniprot
Match: A0A7S0LER7_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LER7_9EUKA)

HSP 1 Score: 284 bits (727), Expect = 8.400e-85
Identity = 151/279 (54.12%), Postives = 198/279 (70.97%), Query Frame = 1
Query: 1174 GHGAGPGPKRSPEQEALAAKIQEHQQEAARLSHTEEVRNLMEYSTGFGVLSTNSKSLDGYPSGSVVGFSLDDKGRPLFAFSSMSSHTGDL-------GDDSRASLTVTAANFKGAADGRVSLIGDVNRVPEEDLPS--VREMYKKKHPNAYWVDFGDFSLMRMDTIKAMRFIGGFAMAGQIEPEDYLNASPDPVAEFSTPISKHMNDDHSETTQAMIKHYITGVEVTSAQISAVDRLGMYVVVGMPDGQSGKLRLPFPRPAESRKDVKNLIVEMTQAAM 1983
            GH     P+ S E++ +   + EHQ+ AARLS  E+ R+L+ YSTG+ VLST S +LDGYPSG++VGF+ D++G P F FS+MSSHT DL           +A+L VTA  F+GAADGRV+LIGDV+RV +E +    +RE+Y++KHPNA+WVDFGDF+  RM  +KA+ F+GGFA AG I+PE Y+NA  DP+  F+ P+  HMNDDHS +T AM+ HYI   +V  A++  +DRLG  V V    GQ+ KLRLPFPRPA  RKDVK LIVEMT+AA+
Sbjct:   74 GHAVRNQPELSEEEKIVQTAVMEHQRSAARLSQAEDARSLVGYSTGYAVLSTLSSALDGYPSGALVGFAHDERGLPFFCFSAMSSHTKDLVAAERSCESGGKAALCVTAKGFEGAADGRVTLIGDVSRVKKEQVEEQGLRELYRQKHPNAFWVDFGDFTFYRMHELKAINFVGGFARAGSIDPEAYMNAVIDPIQAFAAPVMSHMNDDHSSSTTAMVMHYIGLPQVEKAELVQLDRLGFMVQVTRL-GQTFKLRLPFPRPAGDRKDVKTLIVEMTRAAL 351          
BLAST of mRNA_H-canaliculatus_F_contig1372.2978.1 vs. uniprot
Match: A0A6U3QPI0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3QPI0_9STRA)

HSP 1 Score: 283 bits (723), Expect = 1.520e-84
Identity = 153/313 (48.88%), Postives = 201/313 (64.22%), Query Frame = 1
Query: 1078 QQRRLRMEASGEDTEVVAEKKEVAGHSPPQAKGHGAGPGPKRSPEQEALAAKIQEHQQEAARLSHTEEVRNLMEYSTGFGVLSTNSKSLDGYPSGSVVGFSLDDKGRPLFAFSSMSSHTGDLGDDSRASLTVTAANFKGAADGRVSLIGDVNRVPEEDLPSVREMYKKKHPNAYWVDFGDFSLMRMDTIKAMRFIGGFAMAGQIEPEDYLNASPDPVAEFSTPISKHMNDDHSETTQAMIKHYITGVEVTSAQISAVDRLGMYVVV-----GMPDGQSGKLRLPFPRPAESRKDVKNLIVEMTQAAMAGAAEN 2001
            Q R L + +S  D E   EKK   GH         AG   +  PE+  +     EHQQ A +L     VR L++Y+ GF V+STNSK+  GYP GSVVGF+ D+ GRP+F FS MS+HT DL  D R S+T+ A  FKGAADGRV+L+G V  VP E+  +++++Y  KHP A+WV+FGDF+  RMD I+ +RF+GGFA AG + PE+Y  ASPD ++ F   ++ HMNDDH ++T AMI   I G++V+ A I++VD LGMYV V          Q  KLRLPFPR AE RKDVKN+IVEMT++A   + E 
Sbjct:   43 QARTLTLNSSKSDEEAKVEKKNAPGHDV-----RSAGVAQEMDPEEMKVQQAFGEHQQNAPKLDFATSVRTLVQYNHGFAVMSTNSKANPGYPGGSVVGFAPDENGRPVFIFSGMSTHTQDLLADPRCSVTIAAKEFKGAADGRVNLMGKVKLVPSEEREALKDIYLAKHPGAFWVNFGDFNWFRMDEIEDIRFVGGFARAGNVTPEEYAAASPDEISAFGMHVANHMNDDHMDSTIAMISSQIPGLDVSEAVITSVDSLGMYVKVTRTPRASDQPQQFKLRLPFPRKAEDRKDVKNIIVEMTRSAAVASKEE 350          
BLAST of mRNA_H-canaliculatus_F_contig1372.2978.1 vs. uniprot
Match: A0A6T8CG84_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A6T8CG84_9EUKA)

HSP 1 Score: 280 bits (715), Expect = 2.940e-84
Identity = 143/263 (54.37%), Postives = 194/263 (73.76%), Query Frame = 1
Query: 1204 SPEQEALAAKIQEHQQEAARLSHTEEVRNLMEYSTGFGVLSTNSKSLDGYPSGSVVGFSLDDKGRPLFAFSSMSSHTGDLGDDSRASLTVTAANFKGAADGRVSLIGDVNRVPEEDLPS--VREMYKKKHPNAYWVDFGDFSLMRMDTIKAMRFIGGFAMAGQIEPEDYLNASPDPVAEFSTPISKHMNDDHSETTQAMIKHYITGVEVTSAQISAVDRLGMYVVVGMPDGQSGKLRLPFPRPAESRKDVKNLIVEMTQAAMA 1986
            S E++ +   + EHQ+ AARLS  E+ R+L+ Y++G+ VLST SK++DGYPSGS+VGF+ D+KG P+F FS+MS HT DL    +A+L VTA  F+GAADGRV+LIGDV R  +E++ +  ++E+Y+ KHPNA+WVDFGDF+  RM  +KA+ F+GGFA AG   P DY++AS DP+  F+ P+  HMN DHSE+T AM+ HYI   +V  A++  +DRLG  V V    GQ+ KLRLPFPR AE RKDVK LIV+MTQA+++
Sbjct:    1 SEEEKRVQTAVMEHQRGAARLSQAEDSRSLVAYNSGYAVLSTLSKAVDGYPSGSLVGFATDEKGLPVFCFSAMSGHTKDLAKAGKAALCVTAKGFEGAADGRVTLIGDVKRCSKEEVEADGLKELYRAKHPNAFWVDFGDFTWYRMTELKAVNFVGGFARAGNPSPADYMDASVDPIQAFAAPVMGHMNADHSESTIAMVMHYIGLPQVEKAELVQLDRLGFMVQVTR-TGQTFKLRLPFPRAAEDRKDVKTLIVQMTQASLS 262          
BLAST of mRNA_H-canaliculatus_F_contig1372.2978.1 vs. uniprot
Match: R1D7B7_EMIHU (DUF2470 domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D7B7_EMIHU)

HSP 1 Score: 277 bits (708), Expect = 3.410e-83
Identity = 144/265 (54.34%), Postives = 197/265 (74.34%), Query Frame = 1
Query: 1195 PKRSPEQEALAAKIQEHQQEAARLSHTEEVRNLMEYSTGFGVLSTNSKSLDGYPSGSVVGFSLDDKGRPLFAFSSMSSHTGDLGD-DSRASLTVTAANFKGAADGRVSLIGDVNRVPEEDLPS--VREMYKKKHPNAYWVDFGDFSLMRMDTIKAMRFIGGFAMAGQIEPEDYLNASPDPVAEFSTPISKHMNDDHSETTQAMIKHYITGVEVTSAQISAVDRLGMYVVVGMPDGQSGKLRLPFPRPAESRKDVKNLIVEMTQAA 1980
            P+ S E++A+ A + EHQ+ AARL+  E+ R+L+ YS+G+ VLST S  +DGYP+G++VGF+ D  G P+F FS+MSSHT DL     +A+LTVTA  F+GAADGRV+LIGDV RV +E +    ++E+Y+++HPNA+WVDFGDF+  RM ++KA+ F+GGFA A    P++YL+A  DP+  F+ P+  HMNDDH+E+T AM+ HY+   +V +AQ+ A+DRLG  V V    GQ+ KLRLPFPR A  RKDVK+LIVEMTQAA
Sbjct:    2 PELSEEEKAVQAAVMEHQRGAARLTMAEDARSLVAYSSGYAVLSTLSSQVDGYPNGALVGFAPDASGLPVFVFSAMSSHTKDLSKVGGQAALTVTAKGFEGAADGRVTLIGDVERVGKEQVEKEGLKELYRERHPNAFWVDFGDFTFYRMASLKAVNFVGGFARAAAPSPDEYLSAEVDPIQAFAAPVMGHMNDDHAESTVAMVMHYVGLPDVEAAQLVALDRLGFMVQVTR-QGQTFKLRLPFPRAAADRKDVKSLIVEMTQAA 265          
BLAST of mRNA_H-canaliculatus_F_contig1372.2978.1 vs. uniprot
Match: A0A7R9ZB21_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZB21_9STRA)

HSP 1 Score: 278 bits (710), Expect = 4.070e-82
Identity = 139/270 (51.48%), Postives = 191/270 (70.74%), Query Frame = 1
Query: 1207 PEQEALAAKIQEHQQEAARLSHTEEVRNLMEYSTGFGVLSTNSKSLDGYPSGSVVGFSLDDKGRPLFAFSSMSSHTGDLGDDSRASLTVTAANFKGAADGRVSLIGDVNRVPEEDLPSVREMYKKKHPNAYWVDFGDFSLMRMDTIKAMRFIGGFAMAGQIEPEDYLNASPDPVAEFSTPISKHMNDDHSETTQAMIKHYITGVEVTSAQISAVDRLGMYVVVGMP-----DGQSGKLRLPFPRPAESRKDVKNLIVEMTQAAMAGAAEN 2001
            PE+  +     EHQQ A +L    ++R L++Y+ GF V+STNSK+  GYP GSVVGF+ D++GRP+F FS MS+HT DL  D R SLT+ A  FKGAADGRV+L+G V++VP E+  +++++Y +KHP A+WV FGDF+  RMD IK +RF+GGFA AG + P++Y  A PDP++ F + ++ HMN+DH ++T AMI   I G++VT A I++VD LGMYV V          Q  KLRLPFPR A+ RKDVK++IVEMT++A A  +E 
Sbjct:  120 PEEMKIQQAFAEHQQNAPKLGWATDIRTLVQYNHGFAVMSTNSKANPGYPGGSVVGFAPDEEGRPVFIFSGMSTHTQDLLADPRCSLTIAAKEFKGAADGRVNLMGKVSKVPPEECEALKQLYLEKHPGAFWVHFGDFNWFRMDDIKDIRFVGGFARAGSVTPQEYSEAKPDPISAFGSHVANHMNEDHMDSTIAMIADQIPGMDVTDAVITSVDSLGMYVKVSRTPRASDQPQQFKLRLPFPRQAKDRKDVKDIIVEMTRSAAAVTSEE 389          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1372.2978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZW7_ECTSI8.660e-16985.95DUF2470 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A836CG39_9STRA1.030e-11565.38DUF2470 domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S4FQ63_9EUGL1.650e-9659.93Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S4EVY0_CHRCT5.000e-9559.19Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S3U682_9SPIT2.980e-8857.09Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
A0A7S0LER7_9EUKA8.400e-8554.12Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A6U3QPI0_9STRA1.520e-8448.88Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A6T8CG84_9EUKA2.940e-8454.37Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
R1D7B7_EMIHU3.410e-8354.34DUF2470 domain-containing protein n=1 Tax=Emiliani... [more]
A0A7R9ZB21_9STRA4.070e-8251.48Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1372contigH-canaliculatus_F_contig1372:1498..9772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score503.4
Seed ortholog evalue8.7e-140
Seed eggNOG ortholog2880.D7FZW7
EggNOG free text desc.Protein of unknown function (DUF2470)
EggNOG OGs2QV7B@2759,COG0748@1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionFMN-binding split barrel
Ec32 orthologEc-22_003810.1
Exons11
Model size2485
Cds size1101
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929112.9049265-UTR-H-canaliculatus_F_contig1372:1497..15471622929112.9049265-UTR-H-canaliculatus_F_contig1372:1497..1547Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1372 1498..1547 +
1696845683.5332315-UTR-H-canaliculatus_F_contig1372:1497..15471696845683.5332315-UTR-H-canaliculatus_F_contig1372:1497..1547Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1372 1498..1547 +
1622929112.9245648-UTR-H-canaliculatus_F_contig1372:1585..21911622929112.9245648-UTR-H-canaliculatus_F_contig1372:1585..2191Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1372 1586..2191 +
1696845683.5457976-UTR-H-canaliculatus_F_contig1372:1585..21911696845683.5457976-UTR-H-canaliculatus_F_contig1372:1585..2191Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1372 1586..2191 +
1622929112.947578-UTR-H-canaliculatus_F_contig1372:2203..24501622929112.947578-UTR-H-canaliculatus_F_contig1372:2203..2450Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1372 2204..2450 +
1696845683.5552635-UTR-H-canaliculatus_F_contig1372:2203..24501696845683.5552635-UTR-H-canaliculatus_F_contig1372:2203..2450Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1372 2204..2450 +
1622929113.1234365-UTR-H-canaliculatus_F_contig1372:9291..97721622929113.1234365-UTR-H-canaliculatus_F_contig1372:9291..9772Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1372 9292..9772 +
1696845683.6585672-UTR-H-canaliculatus_F_contig1372:9291..97721696845683.6585672-UTR-H-canaliculatus_F_contig1372:9291..9772Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1372 9292..9772 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929112.9675875-CDS-H-canaliculatus_F_contig1372:2450..25261622929112.9675875-CDS-H-canaliculatus_F_contig1372:2450..2526Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1372 2451..2526 +
1696845683.5650933-CDS-H-canaliculatus_F_contig1372:2450..25261696845683.5650933-CDS-H-canaliculatus_F_contig1372:2450..2526Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1372 2451..2526 +
1622929112.9817212-CDS-H-canaliculatus_F_contig1372:2975..31401622929112.9817212-CDS-H-canaliculatus_F_contig1372:2975..3140Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1372 2976..3140 +
1696845683.574547-CDS-H-canaliculatus_F_contig1372:2975..31401696845683.574547-CDS-H-canaliculatus_F_contig1372:2975..3140Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1372 2976..3140 +
1622929112.9980135-CDS-H-canaliculatus_F_contig1372:3846..39811622929112.9980135-CDS-H-canaliculatus_F_contig1372:3846..3981Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1372 3847..3981 +
1696845683.5836148-CDS-H-canaliculatus_F_contig1372:3846..39811696845683.5836148-CDS-H-canaliculatus_F_contig1372:3846..3981Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1372 3847..3981 +
1622929113.01437-CDS-H-canaliculatus_F_contig1372:4567..46371622929113.01437-CDS-H-canaliculatus_F_contig1372:4567..4637Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1372 4568..4637 +
1696845683.593077-CDS-H-canaliculatus_F_contig1372:4567..46371696845683.593077-CDS-H-canaliculatus_F_contig1372:4567..4637Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1372 4568..4637 +
1622929113.0357404-CDS-H-canaliculatus_F_contig1372:5179..53211622929113.0357404-CDS-H-canaliculatus_F_contig1372:5179..5321Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1372 5180..5321 +
1696845683.602587-CDS-H-canaliculatus_F_contig1372:5179..53211696845683.602587-CDS-H-canaliculatus_F_contig1372:5179..5321Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1372 5180..5321 +
1622929113.0516245-CDS-H-canaliculatus_F_contig1372:5985..60301622929113.0516245-CDS-H-canaliculatus_F_contig1372:5985..6030Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1372 5986..6030 +
1696845683.6122158-CDS-H-canaliculatus_F_contig1372:5985..60301696845683.6122158-CDS-H-canaliculatus_F_contig1372:5985..6030Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1372 5986..6030 +
1622929113.0740736-CDS-H-canaliculatus_F_contig1372:6515..66781622929113.0740736-CDS-H-canaliculatus_F_contig1372:6515..6678Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1372 6516..6678 +
1696845683.6218905-CDS-H-canaliculatus_F_contig1372:6515..66781696845683.6218905-CDS-H-canaliculatus_F_contig1372:6515..6678Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1372 6516..6678 +
1622929113.092859-CDS-H-canaliculatus_F_contig1372:8493..86151622929113.092859-CDS-H-canaliculatus_F_contig1372:8493..8615Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1372 8494..8615 +
1696845683.6315281-CDS-H-canaliculatus_F_contig1372:8493..86151696845683.6315281-CDS-H-canaliculatus_F_contig1372:8493..8615Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1372 8494..8615 +
1622929113.109796-CDS-H-canaliculatus_F_contig1372:9108..92911622929113.109796-CDS-H-canaliculatus_F_contig1372:9108..9291Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1372 9109..9291 +
1696845683.6415315-CDS-H-canaliculatus_F_contig1372:9108..92911696845683.6415315-CDS-H-canaliculatus_F_contig1372:9108..9291Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1372 9109..9291 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1372.2978.1prot_H-canaliculatus_F_contig1372.2978.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1372 2451..9291 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1372.2978.1

>prot_H-canaliculatus_F_contig1372.2978.1 ID=prot_H-canaliculatus_F_contig1372.2978.1|Name=mRNA_H-canaliculatus_F_contig1372.2978.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=367bp
MRSFITCGTSSLLLAGARAFTVSPAAHARFFLAQNANRTPTRGSLSRVPS
LSSPGGGGQQRRLRMEASGEDTEVVAEKKEVAGHSPPQAKGHGAGPGPKR
SPEQEALAAKIQEHQQEAARLSHTEEVRNLMEYSTGFGVLSTNSKSLDGY
PSGSVVGFSLDDKGRPLFAFSSMSSHTGDLGDDSRASLTVTAANFKGAAD
GRVSLIGDVNRVPEEDLPSVREMYKKKHPNAYWVDFGDFSLMRMDTIKAM
RFIGGFAMAGQIEPEDYLNASPDPVAEFSTPISKHMNDDHSETTQAMIKH
YITGVEVTSAQISAVDRLGMYVVVGMPDGQSGKLRLPFPRPAESRKDVKN
LIVEMTQAAMAGAAEN*
back to top

mRNA from alignment at H-canaliculatus_F_contig1372:1498..9772+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1372.2978.1 ID=mRNA_H-canaliculatus_F_contig1372.2978.1|Name=mRNA_H-canaliculatus_F_contig1372.2978.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=8275bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1372:1498..9772+ (Hapterophycus canaliculatus Oshoro5f female)
TTAAATGTATCATACGAGTCCCACTCCACTCAGGGGTCACAAGCACAAGG GCTGGTATGTACATGACCCTTGTGCAGGATACTCGCAGGATGCTCCGGGG TTGCTTCGCCAAGTAGAATACGAACAGAAGGTTCCGTCCGTGACAAAAGT CCCAACAAGTCGGCCGCCGGACCGAGCGGGCTGACACCACAGCGGCCGAC AGCGCAGGCCCGAAGGATTGCATGAAGGTGCACGCCCCGAAAAAGCAGGT GGCTTGTCACTTTTGCGTGCTGCCGTCCCACGCCGCCCCGTGCTGTTGTT GCTGCTGCTGCTGCTGCTGCTGCTGCTCCTCCTGCTGCCGATGTGCCGCT GCCGTTCGTGGCCGCCTCGTCCGGTGTTGCCGCCGCCTCAACAACTGGTG TATGCCATCCGTGTGCCGCCTTCTTCTCCACACTCCGTGCACCTTTGCTG CTGTGGGGTGCCGCTGCTGCGACGCCTGGTGTGTGAGGTTCTTGGCCTAT GTATCTCGGTACGCGCGGGTTCCTTTCGCCCTCCCGCCTTCCGCTTCTAT GATGGCAGTTGCCCCGGACCGGCCCCGAGAGTCCTCCAGCGGCTTGAATG ACTTCTGCCGTACGATACGCTACGAACTCCCGCGGCCACCGAAGCCGGCG TTGCCGAGTATGTTGAATAATTTTGAAGTATTGCCCGATCCGCTCGAATC ATCCCCGGTCTGGCTGCTTCCGCGCGGCGCTGACGACCGATTTTTGCCGT ACAGGTCTGTGCATGCCCTGTCCCCCCACAGCAGGCACCACCTTCCACCC TCTCGATGTGGCTGTCTCTGATGGGTCTCCTGCCCCCCCCTACCCTTCTG CCGTCTTCGATCTCTTCGCAAATCCCTTGCCCCCTTTCATCGCTCGCTTG CACGGGGGCGGTCGCCCCCCCGATGCCGCGATGGATACAGGTCCTGTCTC GCGATGCGTTCCTTCATCACCTGCGGAACGTCATCCCTTCTGCTGGCCGG CGCTCGTGCCTTTACGGTTTCTCCAGCAGGTGAGTCCTCGGCTGAGTTCA AACCGGAACAAGATCTTGCGGATTTGCGTCCAGCGTTCGGTTTTCAAGAA TGGAAGTGAACTTGGCACAATCCACTCGAAAATGGCAGACGCCTTCGCAA CCAACGTCTACCGGTAGTTTGGTGGCAACCAAGGCACGAACTTTGAGAAT CAGTCCGGTTTTGCCAAGAGGAGATAACACGTGGATGTGTCACCACGGCT TTGATTTGTTTCGCACCAGCTCAGATTGTACGATCCCCGTATGTCGAAGA CGATGCTTTTTTGCATGTTTGCGTGTGGCATCTTCATTTCTTGGCTCATT ATCAAACCTCCCCCGAGTGTGACGACCTCTCTGCAACCTTGACACCCAAG AATCTCCCCCCCCCTGTTAGCCTTGATGACCACTCCCTCGCCCCCCCCGC CTCGCCTTCCTTCCCCCTGCGCATCCAGCCCACGCACGGTTTTTCCTAGC GCAAAACGCAAACCGTACCCCAACCCGGGGATCGCTGTCTCGTGTCCCCT CGCTCTCGTCACCCGGTGGCGGTGGTCAGCAGCGGCGACTGAGGATGGAG GCGTCCGGAGAGGACACCGAGGTTGTGGCCGAAAAAAAGGAGGGTGAGGA CTGGAAGTTCCCGCGCACCGATTGACGCTTTTCTCGCTCGTGGAAGCGTA GTTCTTGAAGTGGAGCGAGTGAAGGTGGTCATGACTTTTCCGAATAATCG TTTTAGTTCGACGATAGGGTTTCGCATCCCTGCAAGATCGGTCGACGGAA CGATGAATGGCGAAGCGAGTGGTGGGTGAAGTGATTTGGCGGATTGTGCG TCGTGCATCACCCCGCGGATTATTTTTTTCATGGACGTCGTCTGTAGTCT CGACAGTAAGCACTCGAGCGGTGGTCTCGATAGTAAATTTTCGAGCGCAT GTGCCTGAACTGGAACTCTTAGCCTCATACCACGCAGTTGCTATGCCCGA TTCTCCAAAATCCTGATAGTAAGGCAAGTAGATGCGAAACAGGATGCCCT ACGGCGAAGATTGCGTGGAAAATCAAATGCTTGTGTTGATTGGTTTTGAC CAAGCTTCGTTCTTGGCCGGAATATGCCAAGCTCGTCCATGTCAAGCAAG ACCTCCTGTATCGCGTAGTCAGTCGCCGATAAGAAACTTTCCTCGCCCGT TGGTGTCAAGCTAACGAGGGCCGTTGGAGTCTCACTTCTCGCTTATCCTT CCGAAGGACCTTCCGCAGCTACGTACGAACACCCGGAACGGCTGCAACGT GAACTTTAGTCTCCTGATGCGGGCGAACGCCTGTGATGCTTTTCCTGAGT GGCAGGTCACAGCCCCCCCCAGGCCAAGGGACATGGTGCCGGCCCCGGCC CAAAGAGGTCTCCAGAGCAAGAGGCCTTGGCCGCGAAGATACAAGAGCAT CAGCAGGAGGCCGCCCGCCTATCACACACCGAGGGTAAGGTCCAACGCGT TGGGACTGTTGAGGTTTGAGATCGCTCAACCTGAGCTGCAACACGCCCCG AAACTGGAATAGGGTCGAGGCACTTGCTGTTGCGAGCACGACGCGCTGTG ACTCGGTTCTCCCGACATCAGGGGCGCGCCCCGGGAGCTTGCCTCTCTCA TCCACTCTCGCAAAAACTGTGCCAAAGGTTTCACTCGAGGTTGGCGTGCT TTTCGTTGGATTTCCGGAGTAGCCTTTTTGACTACGTGATCCAAGCAATC GGTCGGGTGTTGAGCAGTACAACGTCGAGATGCCGCTGGTCTTTTCCACA CGGGGACCACGAGGTATTTCCACGTTCGTTGGGTTTTGTGGCTGCCACCT GCAAACTTCGCTGCTTGCTATCCTCCAATGGTGCAGCGATGGGAGGGCTC TACCGTGGGTGTTTTTCGCATTCTGTTGTTGTCCAGAGTTCTCTAGGAGG CGGTCGGGTGCCGCAAGTTTGTCATCGTCACGACGCCACGACGGGAAGAT CTGCGCCACAAATACTTGTCCCTTCCTTTTTGGGGTTTTACTCCCCCCCC TCCGCGCCCCCAAACAACAGAGGTGCGAAACTTGATGGAGTACAGCACTG GCTTTGGCGTGCTCAGCACCAACTCCAAGAGCCTCGACGGGTAAGGGAGG GCACCCTTAGCAGTGTTACACTCTGTATTTCTTTACGGTCGAGTCTCACC ACGATCGCAGTGCCTGGCAACATCGACATTGTGGCTACAACGAATGCCTC AGCAGCCGTATAGACCCAGTGGCTTTCGAAGGAGGCCGTGTTTCCTCCAA GAGGATGTTTCGATATCTCCATGCCTGTTCTGCTCGTCACGGCCCGTTTC ACAGCGTGGCATGGGCCTTTTCCACAAAACGCAAACCAGCTCCTTTATGG CGGCATTGTTCTCCTTCAGCGTCGGAGAACGGCCTGCATTTTCCGTCAGT TCCTCACCCTCGATGGTTTCTTTCAATCTCGAAGTGTCTGTCTCCATGCT TCCTCCTGATGTCTCTCAACTGATTACTGGTGTGCAATCGTTGAGGATCC TCCCCCTCGCTCATCTTTCCTTCCTCATGCTTGTGTAAGCTCGTCGACCT CGTTGTCTCTCTCATCGCTCTCTTGCTCTAACCGTTCCTGCGCCCTCTCA CTCCTCTCGTGCTCCGACTCTCTCGTCGCCAGTTATCCCAGCGGCTCCGT GGTGGGATTCTCGCTGGACGACAAGGGACGGCCTCTGTTCGCCTTCAGCT CCATGAGCTCGCACACCGGAGACCTTGGCGACGACTCTCGTGCAAGCCTG ACGGTGACGGCGGCCAACTTCAAGGTATTGTACCATGTGTTTGTCTCAGA GCTTCTTCCTCTCTTCTTGAGACGGCAGTCCTTGCCCCACTAGCATCTCG TCGATTTTTGGGTATCGACTACTGTCTCCACGGATCTGGTGGTGGATGAC GAGCACCGTCTATTTCTGCCGTCGCCATGGCCTCTGGCATTGGTTGCTCA GCATTCCATCCAGTCCAAGGACTCTCGTTGGATCAGACGCCCCCCCCCCC GTGCCTACAGCTATGCATTGGATCTTGAGGCAACCAGGCCTAGACCAATC CTCTTGTTTTCTGTGTGTTTCGTGTGGTTATGCGCTTCCGGGGCGAAAAC TTTCATCTAGAGCTACTCTTATATAGGTCAAGTACGCCTGATTTAGGATG CTATGTGAAAGCTTAGCGAACTCTCGCACCGTCGCCGTCAGCGACGGTCG AAGTAGCAAAGAATAGCACCCTGAGGCGTTGAGTGATTTCCGTTGTCGTC GACCCGAAACAAACGTTGCCAAGCCGTGAACTCGAGCCAAACTGGAAACA CGTTTGCTCGTGATTCTGATGGTACTACCGGGAGTTTTTTGCCTTACTTT TATCTCCCTACCATGCCACTTACTCTGCCATTGCCCGGCTCTGTGGATGT CTGTTCACTTGTCTCCATGAATTTTCTGCCTGTCTCAGGGAGCTGCGGAC GGCCGCGTGAGCTTGATCGGAGACGTCAACAGGGTACGATCGACCGCCGA GAACAGATTGTGACATCATGGTGATGTTTCAGAGGTCCTCCTCCGTACGA AAGCGCACAAACGCTGTGCTTTGCCGTCCCCTTTCTCATGTGGGAATACG TCAAGTTAACATTTCGTTTGATAGTAGCCAGTGAGGGTGGCCAACTTTGC ATGGTTGTATCACAGCGGTTGCGTCTACTGAATTCTGCCCGTGGCCAAAA CTAGATTTTGTTTTGGTAACAATTTCATTACCCCTCGTCGTTGATCGCCC AGCATTGCTCGAGACCAAATGTCATCCGGCACGACTGTTGTCACTTTTGG TGTTGATTATCTTGAGAACTCATCGTCAGACCTTCCTATTTCGCTCTAGT TCAATTTCTCCTCCACGGCGTGTGACTGATTCGTTTTGAAGCTTCTCTCA TTCGATTGGCCGGTACGCTCAAACCGGTTGGTCTGGTGCCTGCGGCGTTG TTTCGATTGGCCCCCTAGGTGCCGGAGGAAGACCTCCCCAGCGTCCGCGA AATGTACAAGAAAAAACACCCAAACGCCTACTGGGTTGACTTCGGCGACT TTTCACTCATGCGGATGGACACCATCAAGGCCATGCGCTTCATCGGGGGC TTCGCCATGGCAGGACAGATCGAGCCAGAAGGTGCAGTGTGTATTTTAAT GCCTGCCAACCTACGCCCGCGCCTTTGGGAAGGTTGTTTACATTGTTTCC CCAGCAAGACCACGCATTCGCAGATTGGAAGCGATATTTTTCTGTAGGGC GGACTCGTTTCAGAGTCATGCCGTTTGATCCGCATCATTTTCATTCGGGA AAAGAGCAGACGTGTGCGGATGCGGTTACCCCTTTGCCATGCCGCACCAA TCAGCTGTATCCCGAGGCGGGTGGGTATTCGCAAGCATCATAATCCTTAA AGAACAGAGCGTACTTGATTTGTGCGATTTGTACGGTGCGGTGCTGCCTC ACGTTAAGAACGCCTCTCTTGGTTTTCCCCCCAACATCCACCGTTTTTCC CGGCTGTTGAAGGTAGAGGTGTACGAAACCGCAGAGGACCCCAAAAAGAA GGCAAGCTAGGGTGTACTATCTCGGTCCCTCCGTCCTCTAAACAGAGGGA GCCTACGTTGGGTTTAATAACGATGGCAGCGAGCGAGCTGCCGCTGTTCG GCGAGTGCCATGAGGAGGAACACCATGAACCGATGAATAGAACCACAATC ACACGATATAAAGGCGTTTGCCGGATGAGACCGCGGTACCGGTGTCCCCG AGCCTTCGCGAAGCCGGCCAATGTGCCTGTAATTTGCACAGTGGATCACA AGTGAGTTTGAAGGAAAAGTACGTTGAGAGAGAAATCGACCACTGCCCGA AGACGGAGGTGGATTCATCAAGATCGTGCTGCAGATGGACACTTTTTGTG GCACGTGATCGGACGTCGTTCACTTAGAAGGCTTGGTCTCACTGAGAGCA GCTAAGCGCGAAGCATTTTCTAGTGCAAGGTGCTAGATTGTATGCTGCCA ACTTGGAAACTGGAGCGAGGAAGGACAGAGTTTCAAATAAGTGTTTCGGC AGCAAAAGTGGGCGATGCATAGACCGGAGTGCAGCAGGACAACGATTTCG TGGGACATCGGAGAATTCAGCACAATCTCAATTTGTGAGGAAGACTAGGG AGTCCAGGAGTGCATCTAGCGAGTGGTATCAACCAAGAAGGAATGTTTTT CTTCTTTTTGAAGCAGAACACGACTTCTCAACTGCACCGCATGCGAAAAC GCACAATACGTCGAAGTTCTTCTCATCGGCAGGGGGTGTGATAACGTAAA AAACAGGTCTTAAAAGTGTACAAAAACGGAGAAATTGACCATGCGTTCCA AGAGGACAAGATAACCAGTACGTGAAAAATAGAACAATCAGACCACCCCG ACGAAAATGTATTTGCGCTCTCTCTGGAGGTGATGCTTGGTAAACTATTC ACGCTTTCGTAGTAGAAGGACTGCGATGGGATTGGAGGACCGGGGCATGG TTTGAAACGCTGTCGCAAGCCCAGGGCAGTATTGTGTGCGGCTACGGCGC ACGCAGTGAAGAACGAGACACTTTGGACAATCGCACGAGCAGCTGGAAGC GTGTGGAGGATCGCGAAGGCGGAGAGGCATGCCCCCCGCCGAACAGTGCT TTCGAGTGTCCAGGCTCTGGACATCTCTCTCGTGCAGTGCATAATTGGCG CAGCCTCCGACGATGGAGACGGCCTAACACATGGATCTTTAGTGTTCCTG CTCTACAAAATATGATGTGAAACGGTTCACAGGGTATGTGACGGGTACCG TTTCGACCGGGAGAACATGCAAGAGGGTGCATGCAAGAGAGGACGACCAA AACGAGAAGGAGAGCATCCGAGACAAAATGCCGACCAAGTTCTGCTGCTG TGCTTCCACCTGTGTCTCTCCTCGTCGTTGTTGATCTCCCCCGCAGATTA CCTGAACGCTTCGCCAGACCCCGTGGCGGAATTTTCTACCCCCATCAGTA AGCACATGAACGACGACCACTCCGAGACCACCCAGGCCATGATCAAGCAC TACATAACGGGTGTCGAGGTGATACCTTCTTTGATGTTTGCTAAGGTTGT GGTAGTGTTCGCCTTGGTTTGGTATCAACCAGCCGTATCTACTACCCCAT ACCAGGCCTGCGGCGTGTCTCGTGTTTGTTCCTCTTCTCGATCTTCCCGA ATGTGACGTAAGGAGAACTGCGTCGGAAAGCAAAACGTCCGGAGCAATCA TTGGACACTGTCTTCCGTTTTGTTCACACTGTTGGTCGTGTTGCAATACG CATGCGACGCAACCGCTTACGACACGTGGCAGCTGTGACCTCCACACGCT GCTCCTTTGTTCTTCCCTTCTCTGTGGAGCGGCAAGAACGACATCCTCTG GCAGGGAGCTCCAGGATTCATGTGAAATCTCGTTGTGCAGCAAAAAGCTG CAATGATCTCACACCCACATACGAAGTAGCCACTAGACATACGTTCGTGA GGGATGATTCCCGTGCCCCTTATCCACCCCACGCCCGCCCTTTCCCTGCT TCCACAAACAGGTGACATCAGCACAGATTTCAGCAGTAGACAGGCTCGGC ATGTATGTCGTCGTGGGCATGCCTGACGGACAATCCGGAAAGCTCAGACT CCCCTTCCCTCGGCCTGCCGAAAGCCGGAAAGATGTCAAAAACCTCATCG TCGAGATGACTCAGGCGGCTATGGCTGGTGCTGCCGAAAACTAAGGAGGG CTCTGTTTCTGGTCATGTTTTTTATTTGCTTGCGGAACATATCCGTATGG TGAGATGGGTAGTTTCGGAACATATGATTTGATCGGGTTTTTTTCCTTCG AGGCACTGCCTAGTCCGAGCCCAAGGGTAGCCTAAGGAACCATGACAAGC TCGCTGGCGTGCCGTGCGAAAAGGATGCCCGCGTACAGCCCACGTAGAAG CAGTGCAGGAATCGTGGCCATAACATGAGGACAGGTTATTGACTCTGCTC ACAAGCTACGTGACGGTGCCAAAACAAATTTGTTACGAGCGATGAATGGA AATTCTAACGGGGCAAAGGCTACATCGCAGTGCGGCATAGCTTCATTGAG GCCGACCCCTGTGAGATGATGAGACATCGATGGACTCATGATTCCAGTTT GGAAATGATCCGGTCATTGTGGTGCATCTGCGGAGGTCATGAGTGACAGA CCGCTAATCTAAAAGAAGCGTCCCC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1372:1498..9772+

>mRNA_H-canaliculatus_F_contig1372.2978.1 ID=mRNA_H-canaliculatus_F_contig1372.2978.1|Name=mRNA_H-canaliculatus_F_contig1372.2978.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2202bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1372:1498..9772+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCGTTCCTTCATCACCTGCGGAACGTCATCCCTTCTGCTGGCCGGCGC
TCGTGCCTTTACGGTTTCTCCAGCAGATGCGTTCCTTCATCACCTGCGGA
ACGTCATCCCTTCTGCTGGCCGGCGCTCGTGCCTTTACGGTTTCTCCAGC
AGCCCACGCACGGTTTTTCCTAGCGCAAAACGCAAACCGTACCCCAACCC
GGGGATCGCTGTCTCGTGTCCCCTCGCTCTCGTCACCCGGTGGCGGTGGT
CAGCAGCGGCGACTGAGGATGGAGGCGTCCGGAGAGGACACCGAGGTTGT
GGCCGAAAAAAAGGAGGCCCACGCACGGTTTTTCCTAGCGCAAAACGCAA
ACCGTACCCCAACCCGGGGATCGCTGTCTCGTGTCCCCTCGCTCTCGTCA
CCCGGTGGCGGTGGTCAGCAGCGGCGACTGAGGATGGAGGCGTCCGGAGA
GGACACCGAGGTTGTGGCCGAAAAAAAGGAGGTGGCAGGTCACAGCCCCC
CCCAGGCCAAGGGACATGGTGCCGGCCCCGGCCCAAAGAGGTCTCCAGAG
CAAGAGGCCTTGGCCGCGAAGATACAAGAGCATCAGCAGGAGGCCGCCCG
CCTATCACACACCGAGGTGGCAGGTCACAGCCCCCCCCAGGCCAAGGGAC
ATGGTGCCGGCCCCGGCCCAAAGAGGTCTCCAGAGCAAGAGGCCTTGGCC
GCGAAGATACAAGAGCATCAGCAGGAGGCCGCCCGCCTATCACACACCGA
GGAGGTGCGAAACTTGATGGAGTACAGCACTGGCTTTGGCGTGCTCAGCA
CCAACTCCAAGAGCCTCGACGGAGGTGCGAAACTTGATGGAGTACAGCAC
TGGCTTTGGCGTGCTCAGCACCAACTCCAAGAGCCTCGACGGTTATCCCA
GCGGCTCCGTGGTGGGATTCTCGCTGGACGACAAGGGACGGCCTCTGTTC
GCCTTCAGCTCCATGAGCTCGCACACCGGAGACCTTGGCGACGACTCTCG
TGCAAGCCTGACGGTGACGGCGGCCAACTTCAAGTTATCCCAGCGGCTCC
GTGGTGGGATTCTCGCTGGACGACAAGGGACGGCCTCTGTTCGCCTTCAG
CTCCATGAGCTCGCACACCGGAGACCTTGGCGACGACTCTCGTGCAAGCC
TGACGGTGACGGCGGCCAACTTCAAGGGAGCTGCGGACGGCCGCGTGAGC
TTGATCGGAGACGTCAACAGGGGAGCTGCGGACGGCCGCGTGAGCTTGAT
CGGAGACGTCAACAGGGTGCCGGAGGAAGACCTCCCCAGCGTCCGCGAAA
TGTACAAGAAAAAACACCCAAACGCCTACTGGGTTGACTTCGGCGACTTT
TCACTCATGCGGATGGACACCATCAAGGCCATGCGCTTCATCGGGGGCTT
CGCCATGGCAGGACAGATCGAGCCAGAAGGTGCCGGAGGAAGACCTCCCC
AGCGTCCGCGAAATGTACAAGAAAAAACACCCAAACGCCTACTGGGTTGA
CTTCGGCGACTTTTCACTCATGCGGATGGACACCATCAAGGCCATGCGCT
TCATCGGGGGCTTCGCCATGGCAGGACAGATCGAGCCAGAAGATTACCTG
AACGCTTCGCCAGACCCCGTGGCGGAATTTTCTACCCCCATCAGTAAGCA
CATGAACGACGACCACTCCGAGACCACCCAGGCCATGATCAAGCACTACA
TAACGGGTGTCGAGATTACCTGAACGCTTCGCCAGACCCCGTGGCGGAAT
TTTCTACCCCCATCAGTAAGCACATGAACGACGACCACTCCGAGACCACC
CAGGCCATGATCAAGCACTACATAACGGGTGTCGAGGTGACATCAGCACA
GATTTCAGCAGTAGACAGGCTCGGCATGTATGTCGTCGTGGGCATGCCTG
ACGGACAATCCGGAAAGCTCAGACTCCCCTTCCCTCGGCCTGCCGAAAGC
CGGAAAGATGTCAAAAACCTCATCGTCGAGATGACTCAGGCGGCTATGGC
TGGTGCTGCCGAAAACTAAGTGACATCAGCACAGATTTCAGCAGTAGACA
GGCTCGGCATGTATGTCGTCGTGGGCATGCCTGACGGACAATCCGGAAAG
CTCAGACTCCCCTTCCCTCGGCCTGCCGAAAGCCGGAAAGATGTCAAAAA
CCTCATCGTCGAGATGACTCAGGCGGCTATGGCTGGTGCTGCCGAAAACT
AA
back to top