mRNA_H-canaliculatus_F_contig137.2965.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig137.2965.1
Unique NamemRNA_H-canaliculatus_F_contig137.2965.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig137.2965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig137contigH-canaliculatus_F_contig137:53853..54682 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size629
Cds size627
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929110.0542288-CDS-H-canaliculatus_F_contig137:53852..542181622929110.0542288-CDS-H-canaliculatus_F_contig137:53852..54218Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig137 53853..54218 -
1696845682.3999498-CDS-H-canaliculatus_F_contig137:53852..542181696845682.3999498-CDS-H-canaliculatus_F_contig137:53852..54218Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig137 53853..54218 -
1622929110.071165-CDS-H-canaliculatus_F_contig137:54421..546821622929110.071165-CDS-H-canaliculatus_F_contig137:54421..54682Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig137 54422..54682 -
1696845682.4083707-CDS-H-canaliculatus_F_contig137:54421..546821696845682.4083707-CDS-H-canaliculatus_F_contig137:54421..54682Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig137 54422..54682 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig137.2965.1prot_H-canaliculatus_F_contig137.2965.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig137 53853..54682 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig137.2965.1

>prot_H-canaliculatus_F_contig137.2965.1 ID=prot_H-canaliculatus_F_contig137.2965.1|Name=mRNA_H-canaliculatus_F_contig137.2965.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=209bp
GTRNKRRRTPRAIDTPLFRHGALTYPSTRGMKACLSSMSSSDNEWDAFVA
VVSSDRAVLDVLLRGARKRHDLDHERRGETWPQAVREVVADAFSDDGVLR
LLREKIKLLLPDGASQRAVRTVKRHAPSCGSKQVPAAAVGDEVVPGTHPP
SAVPHTTQRRNTSSTSHDSATSLSLHGEGNLEGIDGSADKALGEDGGGDK
GVNADGKGG
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mRNA from alignment at H-canaliculatus_F_contig137:53853..54682-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig137.2965.1 ID=mRNA_H-canaliculatus_F_contig137.2965.1|Name=mRNA_H-canaliculatus_F_contig137.2965.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=830bp|location=Sequence derived from alignment at H-canaliculatus_F_contig137:53853..54682- (Hapterophycus canaliculatus Oshoro5f female)
GGAACCAGGAACAAACGACGCCGCACGCCACGTGCCATAGACACGCCGCT
TTTTCGACATGGAGCTCTGACGTACCCATCGACTCGAGGGATGAAGGCAT
GCCTCAGCTCGATGTCTAGCTCCGACAACGAATGGGACGCATTTGTCGCC
GTGGTTTCGAGCGATCGTGCGGTTTTGGACGTTCTGCTTCGAGGGGCACG
GAAGCGGCACGATTTGGATCACGAGCGAAGGGGCGAAACATGGCCACAGG
CAGTGCGAGAGGTAGTTCCCTGATGACCCCATAATGCTATGCATGTTTCA
TGCTTGCTTCGCTTCCATGAAAATCGTACACGCGTACGGGTCAATTCTCA
ACGATGTAGCTGTAGGCTCCGTCTTGAATGAGGTAACACGATCAGTCGAT
ACTTGTCCTGCTGTATGCTTTTCATCCCCGTTCTTGCTTCCACCGATGCC
TCCTCCTCTTCCAGGTAGTAGCCGACGCTTTTTCGGATGATGGGGTTCTG
CGATTGTTAAGAGAGAAGATAAAACTACTCCTGCCCGATGGAGCATCCCA
GAGAGCAGTACGCACCGTCAAGAGACACGCGCCATCGTGCGGCAGCAAGC
AAGTACCGGCAGCAGCAGTTGGAGATGAGGTTGTACCCGGGACGCATCCT
CCCTCGGCCGTCCCACACACAACACAACGCCGAAATACAAGCAGCACTTC
CCATGATTCTGCTACGTCGCTGTCACTTCACGGCGAAGGAAACCTCGAGG
GTATTGATGGATCTGCGGACAAGGCCTTGGGTGAGGATGGAGGGGGCGAC
AAGGGGGTGAATGCTGATGGTAAAGGGGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig137:53853..54682-

>mRNA_H-canaliculatus_F_contig137.2965.1 ID=mRNA_H-canaliculatus_F_contig137.2965.1|Name=mRNA_H-canaliculatus_F_contig137.2965.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1254bp|location=Sequence derived from alignment at H-canaliculatus_F_contig137:53853..54682- (Hapterophycus canaliculatus Oshoro5f female)
GGAACCAGGAACAAACGACGCCGCACGCCACGTGCCATAGACACGCCGCT
TTTTCGACATGGAGCTCTGACGTACCCATCGACTCGAGGGATGAAGGCAT
GCCTCAGCTCGATGTCTAGCTCCGACAACGAATGGGACGCATTTGTCGCC
GTGGTTTCGAGCGATCGTGCGGTTTTGGACGTTCTGCTTCGAGGGGCACG
GAAGCGGCACGATTTGGATCACGAGCGAAGGGGCGAAACATGGCCACAGG
CAGTGCGAGAGGGAACCAGGAACAAACGACGCCGCACGCCACGTGCCATA
GACACGCCGCTTTTTCGACATGGAGCTCTGACGTACCCATCGACTCGAGG
GATGAAGGCATGCCTCAGCTCGATGTCTAGCTCCGACAACGAATGGGACG
CATTTGTCGCCGTGGTTTCGAGCGATCGTGCGGTTTTGGACGTTCTGCTT
CGAGGGGCACGGAAGCGGCACGATTTGGATCACGAGCGAAGGGGCGAAAC
ATGGCCACAGGCAGTGCGAGAGGTAGTAGCCGACGCTTTTTCGGATGATG
GGGTTCTGCGATTGTTAAGAGAGAAGATAAAACTACTCCTGCCCGATGGA
GCATCCCAGAGAGCAGTACGCACCGTCAAGAGACACGCGCCATCGTGCGG
CAGCAAGCAAGTACCGGCAGCAGCAGTTGGAGATGAGGTTGTACCCGGGA
CGCATCCTCCCTCGGCCGTCCCACACACAACACAACGCCGAAATACAAGC
AGCACTTCCCATGATTCTGCTACGTCGCTGTCACTTCACGGCGAAGGAAA
CCTCGAGGGTATTGATGGATCTGCGGACAAGGCCTTGGGTGAGGATGGAG
GGGGCGACAAGGGGGTGAATGCTGATGGTAAAGGGGGCGTAGTAGCCGAC
GCTTTTTCGGATGATGGGGTTCTGCGATTGTTAAGAGAGAAGATAAAACT
ACTCCTGCCCGATGGAGCATCCCAGAGAGCAGTACGCACCGTCAAGAGAC
ACGCGCCATCGTGCGGCAGCAAGCAAGTACCGGCAGCAGCAGTTGGAGAT
GAGGTTGTACCCGGGACGCATCCTCCCTCGGCCGTCCCACACACAACACA
ACGCCGAAATACAAGCAGCACTTCCCATGATTCTGCTACGTCGCTGTCAC
TTCACGGCGAAGGAAACCTCGAGGGTATTGATGGATCTGCGGACAAGGCC
TTGGGTGAGGATGGAGGGGGCGACAAGGGGGTGAATGCTGATGGTAAAGG
GGGC
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