mRNA_H-canaliculatus_F_contig13699.2961.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13699.2961.1
Unique NamemRNA_H-canaliculatus_F_contig13699.2961.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13699.2961.1 vs. uniprot
Match: D7FWV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWV3_ECTSI)

HSP 1 Score: 354 bits (908), Expect = 2.240e-110
Identity = 181/236 (76.69%), Postives = 202/236 (85.59%), Query Frame = 1 
Query:   19 QAKALEARATTRGDSREAKAAAEKLKRNTAKLNEVTKEFDKRLSRCCDEMTRAWDEREKMMNGLVARIVHFQESFFGEMLMCGLGVARILSEAEGSGPRWGGTAGIEPFVPKGHIRHYEGELIRKHTLMKERMWYRLVGSSLEVYDVKTKE---DEPLYVVTEAPIEVWEVKGVARMSAVNFRVTVLAGPD---GGLNLFAADEVDGQGWMDALVRASEWDQLASASKVRGAGGGG 708
            +A+ALEARATTRGDSR+AK AAEKLKRNT KLNEVT EFDK+LS CC+ MTRAW++REKMMNG+VARIVHFQESFF E LM  LGVARILS AEG GPRWGGT GIEPFVPKGH+RHYEGEL+RKH +MKERMWYRLVGSSLEVYD+K KE   + P+YVVTE P+ V EVKGV ++S VNFRVTVL G +   GGLNL+AADEVDG+GWMDAL RASEWDQLAS+SK  G   GG
Sbjct:  154 KARALEARATTRGDSRDAKQAAEKLKRNTKKLNEVTVEFDKKLSSCCNRMTRAWEDREKMMNGIVARIVHFQESFFAEQLMNSLGVARILSAAEGGGPRWGGTMGIEPFVPKGHVRHYEGELLRKHMVMKERMWYRLVGSSLEVYDMKPKEGRDNTPMYVVTELPVTVHEVKGVTKVSGVNFRVTVLGGGETGGGGLNLYAADEVDGKGWMDALTRASEWDQLASSSKAAGIAPGG 389
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BLAST of mRNA_H-canaliculatus_F_contig13699.2961.1 vs. uniprot
Match: A0A6H5KHT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHT2_9PHAE)

HSP 1 Score: 354 bits (908), Expect = 1.970e-108
Identity = 179/229 (78.17%), Postives = 201/229 (87.77%), Query Frame = 1 
Query:   19 QAKALEARATTRGDSREAKAAAEKLKRNTAKLNEVTKEFDKRLSRCCDEMTRAWDEREKMMNGLVARIVHFQESFFGEMLMCGLGVARILSEAEGSGPRWGGTAGIEPFVPKGHIRHYEGELIRKHTLMKERMWYRLVGSSLEVYDVKTKE---DEPLYVVTEAPIEVWEVKGVARMSAVNFRVTVLAGPD---GGLNLFAADEVDGQGWMDALVRASEWDQLASASKV 687
            +A+ALEARATTRGDSR+AK AAEKLKRNT KLNEVT EFDK+LS CC+ MTRAWD+REKMMNG+VARIVHFQESFF E LM  LGVARILS AEGSGPRWGGT GIEPFVPKGH+RHYEGEL+RKH +MKERMWYRLVGSSLE YD+K KE   + P+YVVTE P+ V+EVKGV ++S VNFRVTVL G +   GGLNL+AADEVDG+GWMDAL RASEWDQLAS++KV
Sbjct:  154 KARALEARATTRGDSRDAKQAAEKLKRNTKKLNEVTVEFDKKLSSCCNRMTRAWDDREKMMNGIVARIVHFQESFFAEQLMNSLGVARILSAAEGSGPRWGGTMGIEPFVPKGHVRHYEGELLRKHMVMKERMWYRLVGSSLEAYDMKPKEGRDNTPMYVVTELPVAVYEVKGVTKISGVNFRVTVLGGGETGGGGLNLYAADEVDGKGWMDALTRASEWDQLASSNKV 382
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BLAST of mRNA_H-canaliculatus_F_contig13699.2961.1 vs. uniprot
Match: A0A835ZFV6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFV6_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 4.570e-17
Identity = 71/245 (28.98%), Postives = 106/245 (43.27%), Query Frame = 1 
Query:   85 EKLKRNTAKLNEVTKEFDKRLSRCCDEMTRAWDEREKMMNGLVARIVHFQESFFGEMLMCGLGVARILS----------EAEGSGPRWG---GTAGIEPFVPKGHIRHYEGELIRKHTLMKERMWYRLVGSSLEVYDVKTKEDEPLYV------VTEAPIEVWEVKGVARMSAVNFRVTVLAG----------------------------PDGG--LNLFAADEVDGQGWMDALVRASEWDQLA 672
            ++L+RN  KL+EV  E+D+     C  + +AW ER  ++  L+ R+V F+ES     L    G++++L           EA   G   G   G    E ++P   ++H+EG L+RK T+MK +++ RLVGS L  YD   +             V   P  V++V GV       FR T ++                              DGG  L L A    +G  W +AL RA+ WD  A
Sbjct:  112 DRLQRNLIKLDEVKLEYDRASKDTCSALNKAWQERIPILTALLTRLVRFEESKHSHCLSQAFGLSQLLGTSAAAAAAALEAAWVGSNGGVRTGAGDAEAYLPMDAVKHHEGPLLRKGTVMKTKIYCRLVGSLLHAYDFSDENCSASATGCNHGAVLLEPRAVYDVTGVENAGEAAFRETSISSFFNCSTSTGAXXXXXXXXXXXXXXXRVQVDGGKELLLAALTPEEGPAWGEALARAASWDAQA 356
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13699.2961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FWV3_ECTSI2.240e-11076.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KHT2_9PHAE1.970e-10878.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZFV6_9STRA4.570e-1728.98Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13699contigH-canaliculatus_F_contig13699:4..2691 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionArfaptin homology (AH) domain/BAR domain
Ec32 orthologEc-08_004540.1
Exons4
Model size801
Cds size801
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13699.2961.1prot_H-canaliculatus_F_contig13699.2961.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13699 4..2691 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929109.9619632-CDS-H-canaliculatus_F_contig13699:3..4051622929109.9619632-CDS-H-canaliculatus_F_contig13699:3..405Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13699 4..405 -
1696845682.3608277-CDS-H-canaliculatus_F_contig13699:3..4051696845682.3608277-CDS-H-canaliculatus_F_contig13699:3..405Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13699 4..405 -
1622929109.9781258-CDS-H-canaliculatus_F_contig13699:899..10641622929109.9781258-CDS-H-canaliculatus_F_contig13699:899..1064Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13699 900..1064 -
1696845682.3731096-CDS-H-canaliculatus_F_contig13699:899..10641696845682.3731096-CDS-H-canaliculatus_F_contig13699:899..1064Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13699 900..1064 -
1622929109.9929621-CDS-H-canaliculatus_F_contig13699:1623..17591622929109.9929621-CDS-H-canaliculatus_F_contig13699:1623..1759Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13699 1624..1759 -
1696845682.382195-CDS-H-canaliculatus_F_contig13699:1623..17591696845682.382195-CDS-H-canaliculatus_F_contig13699:1623..1759Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13699 1624..1759 -
1622929110.0064123-CDS-H-canaliculatus_F_contig13699:2593..26911622929110.0064123-CDS-H-canaliculatus_F_contig13699:2593..2691Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13699 2594..2691 -
1696845682.3909485-CDS-H-canaliculatus_F_contig13699:2593..26911696845682.3909485-CDS-H-canaliculatus_F_contig13699:2593..2691Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13699 2594..2691 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13699.2961.1

>prot_H-canaliculatus_F_contig13699.2961.1 ID=prot_H-canaliculatus_F_contig13699.2961.1|Name=mRNA_H-canaliculatus_F_contig13699.2961.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=267bp
MVYGGSQAKALEARATTRGDSREAKAAAEKLKRNTAKLNEVTKEFDKRLS
RCCDEMTRAWDEREKMMNGLVARIVHFQESFFGEMLMCGLGVARILSEAE
GSGPRWGGTAGIEPFVPKGHIRHYEGELIRKHTLMKERMWYRLVGSSLEV
YDVKTKEDEPLYVVTEAPIEVWEVKGVARMSAVNFRVTVLAGPDGGLNLF
AADEVDGQGWMDALVRASEWDQLASASKVRGAGGGGRCGAGGGGGRGGGR
GGGGVGGAGRGRDDGGG
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mRNA from alignment at H-canaliculatus_F_contig13699:4..2691-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13699.2961.1 ID=mRNA_H-canaliculatus_F_contig13699.2961.1|Name=mRNA_H-canaliculatus_F_contig13699.2961.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2688bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13699:4..2691- (Hapterophycus canaliculatus Oshoro5f female)
ATGGTTTATGGTGGGTCCCAGGCGAAGGCGCTGGAGGCGCGAGCAACGAC
ACGGGGCGACAGCAGGGAGGCAAAGGCTGCCGCTGAAAAGCTCAAGAGGT
GAAGCCAAGACAAAACACACGCACACAGACACATATACACGCAAACACAG
ACACACACACACACACATGCAGTCGATGTTTCCGCTGCAGTTGCGGTGCA
AGCGCCATTATTCTAGTGCTTCTGTAGTGCCTTCTCTTGTCTGGTCTTAG
GCCGTGCGGTGTTCTGTTCGTACGTCTCTGCCTTGCTCGGGAAAGGGGGA
TCGCCAACGTGGTAGGTAAGGGGGGGGTCGAGAGCGTCTCCTTGAATCTT
GTTGCGCACAAGGTCGCCATCTCTGCTCCGGTGGCGAGGGGGGTGTCGTG
AGGCGGGCCTTGGAAGGTGAGGTCGTTCGTCATGGTGTCGTATGTAGCCC
GGTCTGCGTTGTTTTTGAGTCACTACAAACGAAGTCGTGCGGCAGGGGGG
GCGGGGGGCGGGGGGGGGCACCGTGGCCAACTTCGTTTTTGGGTAGTACT
TCCCATCGTGACGATGAGGCTTTCTCGATCGTAAGGGGTAGCAGCGTTGG
CGATTTTTATCCGTTGCTTGGACTCCCCGCTCTTGCCCCTCGGTCCCTGT
CTTCTCGCTCTCTGATGAATGAATGCCTAGTCTCCCGTGGGTCCATTCGC
CGCGACGGCGACGACGATGACGACGACGACGACGACGACTGTTCCGCGCT
GGAACGGAAATACCAAAAAGGAAACACCGAAACGAAAACACCAAAACGAA
AGTGCCACCGTACATGGAACACCACCCACGACGACGACGACGACGACGAC
GACGACGATGAAATGATTAATTACCCTTGCATTGACGACGACAACGACGG
CGACCCCCTTCCTGTAACGACGATCCTTCCAGAAACACTGCCAAGCTCAA
CGAGGTGACGAAGGAGTTCGACAAGCGGCTCAGCCGCTGCTGCGACGAGA
TGACCCGGGCTTGGGATGAGCGCGAGAAGATGATGAACGGCCTCGTCGCC
CGCATCGTTCACTTCCAGGTAAAAGGTGCTCGCGCGCCAAGCCTTGCGCA
TTCTCTCGCCAGCACAAGGTACATGGAATGGGAACACCAGCCAGCGAGCG
CTGCCTGCGGTGTCGTGTCGGGAGTGGTTCCCTTATTTTGCTCCCAAAGG
GTTTATTTCCACTCGTTCCTTCCTCCCACAAGCTTCTTGCTTTTGCTTCC
AGTTGCCTGTTGCCTGAGGATCGCTACCCTCGTCCCCCCCCCCCCTGGTC
GAATGCGGCACGACGAAACTGATTTCATACGCGGCAAACGCAGTTCGCAA
TTTTGGGCCAACTGGTTGATCGATGGGATACACATGTTTGTCCTCGTTCT
TGCTCGTTTGTGACGCGGCCGACTCCTTCTTCGGGGAGAGATGCTGCTGA
CGCGCGACTGACTGGCAGATGGATCGATCGGTAGGACACACAAAAACGAT
GTGATGAAATACTCGCGTTCGTGCAGGCAGGAAGGGGCCCTACCCCCTGC
GGCGAGATCCTGGTTATGTGCGAGAGGTGGTTGCTCGATGGGTTATTTAT
ATTTCGGTGCCCCTTCGCGTGTCGCAGGAGTCGTTCTTCGGCGAGATGCT
CATGTGCGGCCTCGGCGTGGCGCGTATCCTGAGCGAGGCGGAAGGGAGCG
GGCCGAGGTGGGGCGGGACGGCGGGAATCGAGCCTTTCGTCCCGAAGGGA
CACATCCGCCACTACGAGGGAGAGCTCATCAGAAAACACACGGTGAGGTT
CTCACGTCGGTCGTCACCGGCCGAGCCTTGGAGCAACTTTCCTAGCACGC
GGTGGAAGACGGGTGGCTCGTCGCGTGTGGCGTTGGCCTCTTGGCTTATT
GTGTGCCGCCGGTTGAAGATTGGCTTGGGTGGCAATGCCGTCGAAAGAAG
GTCGTCCGCCGGAAGAGGGCTGAAGCTTGTTGGCGCGCATCGAGTCTAGA
CAACGCATCATCCACTGTGGGGTATGGAAGAGACAGGTGTACGTGACCCG
CAACACAGACCCAAACCCATTCGCCGTTTGGTTAACCGACTGAAACCAAG
TCGGGAATGAAGCAGCGCTGGGCCGATCAGATCAACCCCCGACGAGAACC
ACGGTCGTGCACGCTCGGCAACAAGAAACGCCTCACGTGGACACAACCCG
AAAAATCGAAAACACGCACCCTATCTCGACGCCGCTCTCCCCCGCCCCTC
TCCTTCACCGCGCCTTCCAAAACAAACAACGCACAGCTGATGAAGGAGCG
GATGTGGTACCGGCTGGTGGGATCGTCGCTCGAGGTGTACGACGTGAAGA
CGAAGGAGGACGAGCCCCTCTACGTCGTCACGGAGGCGCCCATCGAGGTG
TGGGAGGTCAAGGGCGTCGCCCGGATGTCCGCCGTCAACTTCCGCGTCAC
GGTCCTGGCCGGACCCGACGGAGGGCTCAACCTGTTCGCGGCCGACGAGG
TGGACGGGCAGGGCTGGATGGACGCGCTCGTCCGGGCGTCGGAGTGGGAC
CAGCTCGCTTCAGCTAGCAAGGTGCGGGGGGCGGGGGGGGGGGGGCGGTG
CGGTGCCGGGGGGGGGGGGGGGCGGGGGGGGGGGAGGGGGGGGGGGGGGG
TCGGGGGGGCCGGCCGGGGTCGGGACGACGGGGGGGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13699:4..2691-

>mRNA_H-canaliculatus_F_contig13699.2961.1 ID=mRNA_H-canaliculatus_F_contig13699.2961.1|Name=mRNA_H-canaliculatus_F_contig13699.2961.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1602bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13699:4..2691- (Hapterophycus canaliculatus Oshoro5f female)
ATGGTTTATGGTGGGTCCCAGGCGAAGGCGCTGGAGGCGCGAGCAACGAC
ACGGGGCGACAGCAGGGAGGCAAAGGCTGCCGCTGAAAAGCTCAAGAGAT
GGTTTATGGTGGGTCCCAGGCGAAGGCGCTGGAGGCGCGAGCAACGACAC
GGGGCGACAGCAGGGAGGCAAAGGCTGCCGCTGAAAAGCTCAAGAGAAAC
ACTGCCAAGCTCAACGAGGTGACGAAGGAGTTCGACAAGCGGCTCAGCCG
CTGCTGCGACGAGATGACCCGGGCTTGGGATGAGCGCGAGAAGATGATGA
ACGGCCTCGTCGCCCGCATCGTTCACTTCCAGAAACACTGCCAAGCTCAA
CGAGGTGACGAAGGAGTTCGACAAGCGGCTCAGCCGCTGCTGCGACGAGA
TGACCCGGGCTTGGGATGAGCGCGAGAAGATGATGAACGGCCTCGTCGCC
CGCATCGTTCACTTCCAGGAGTCGTTCTTCGGCGAGATGCTCATGTGCGG
CCTCGGCGTGGCGCGTATCCTGAGCGAGGCGGAAGGGAGCGGGCCGAGGT
GGGGCGGGACGGCGGGAATCGAGCCTTTCGTCCCGAAGGGACACATCCGC
CACTACGAGGGAGAGCTCATCAGAAAACACACGGAGTCGTTCTTCGGCGA
GATGCTCATGTGCGGCCTCGGCGTGGCGCGTATCCTGAGCGAGGCGGAAG
GGAGCGGGCCGAGGTGGGGCGGGACGGCGGGAATCGAGCCTTTCGTCCCG
AAGGGACACATCCGCCACTACGAGGGAGAGCTCATCAGAAAACACACGCT
GATGAAGGAGCGGATGTGGTACCGGCTGGTGGGATCGTCGCTCGAGGTGT
ACGACGTGAAGACGAAGGAGGACGAGCCCCTCTACGTCGTCACGGAGGCG
CCCATCGAGGTGTGGGAGGTCAAGGGCGTCGCCCGGATGTCCGCCGTCAA
CTTCCGCGTCACGGTCCTGGCCGGACCCGACGGAGGGCTCAACCTGTTCG
CGGCCGACGAGGTGGACGGGCAGGGCTGGATGGACGCGCTCGTCCGGGCG
TCGGAGTGGGACCAGCTCGCTTCAGCTAGCAAGGTGCGGGGGGCGGGGGG
GGGGGGGCGGTGCGGTGCCGGGGGGGGGGGGGGGCGGGGGGGGGGGAGGG
GGGGGGGGGGGGTCGGGGGGGCCGGCCGGGGTCGGGACGACGGGGGGGGG
CTGATGAAGGAGCGGATGTGGTACCGGCTGGTGGGATCGTCGCTCGAGGT
GTACGACGTGAAGACGAAGGAGGACGAGCCCCTCTACGTCGTCACGGAGG
CGCCCATCGAGGTGTGGGAGGTCAAGGGCGTCGCCCGGATGTCCGCCGTC
AACTTCCGCGTCACGGTCCTGGCCGGACCCGACGGAGGGCTCAACCTGTT
CGCGGCCGACGAGGTGGACGGGCAGGGCTGGATGGACGCGCTCGTCCGGG
CGTCGGAGTGGGACCAGCTCGCTTCAGCTAGCAAGGTGCGGGGGGCGGGG
GGGGGGGGGCGGTGCGGTGCCGGGGGGGGGGGGGGGCGGGGGGGGGGGAG
GGGGGGGGGGGGGGTCGGGGGGGCCGGCCGGGGTCGGGACGACGGGGGGG
GG
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