mRNA_H-canaliculatus_F_contig13685.2957.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13685.2957.1
Unique NamemRNA_H-canaliculatus_F_contig13685.2957.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13685.2957.1 vs. uniprot
Match: D7FYJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYJ7_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 7.160e-50
Identity = 101/129 (78.29%), Postives = 110/129 (85.27%), Query Frame = 1 
Query:   10 KAAALSAVGALLPGLAGGSGGDADSNGNATAIAEAVVGLVRSCWEGAGAGGRGGSGGELVPISAGRLLLSLTTVLPPSALESSQALAALLKESSQVAANLPVAARVLLYSSLSAFLLPPRFLQGDMGKV 396
            +AAALSAVG LLPGLA GS GD     NATAIAEAVV LVRSCWE A + G GG G E+VP+SAGRLLLSL TVLPPS+LE+SQA+AALLK+SSQVAA LPVAARVLLYSSLSAFL+PPR L GDMGKV
Sbjct:   53 QAAALSAVGGLLPGLAAGSDGD----NNATAIAEAVVALVRSCWESAASEG-GGDGREVVPVSAGRLLLSLNTVLPPSSLEASQAVAALLKQSSQVAATLPVAARVLLYSSLSAFLMPPRLLHGDMGKV 176
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BLAST of mRNA_H-canaliculatus_F_contig13685.2957.1 vs. uniprot
Match: A0A6H5KJI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJI2_9PHAE)

HSP 1 Score: 164 bits (416), Expect = 3.600e-45
Identity = 100/129 (77.52%), Postives = 109/129 (84.50%), Query Frame = 1 
Query:   10 KAAALSAVGALLPGLAGGSGGDADSNGNATAIAEAVVGLVRSCWEGAGAGGRGGSGGELVPISAGRLLLSLTTVLPPSALESSQALAALLKESSQVAANLPVAARVLLYSSLSAFLLPPRFLQGDMGKV 396
            +AAALSAVG LLPGLA  +GGD DSN  ATAIAEAVV LVRSCWE A  G   G G E+VP+SAGRLLLSL TVLPPS+LE+SQA+A LLK+SSQVAA LPVAARVLLYSSLSAFL+PPR L GDMGKV
Sbjct:   56 QAAALSAVGGLLPGLA--AGGDGDSN--ATAIAEAVVALVRSCWESASEGD--GDGREVVPVSAGRLLLSLNTVLPPSSLEASQAVATLLKQSSQVAATLPVAARVLLYSSLSAFLMPPRLLHGDMGKV 178
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13685.2957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYJ7_ECTSI7.160e-5078.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJI2_9PHAE3.600e-4577.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13685contigH-canaliculatus_F_contig13685:233..2842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_004270.1
Exons3
Model size396
Cds size396
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13685.2957.1prot_H-canaliculatus_F_contig13685.2957.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13685 233..2842 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929109.0044172-CDS-H-canaliculatus_F_contig13685:232..3301622929109.0044172-CDS-H-canaliculatus_F_contig13685:232..330Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13685 233..330 +
1696845682.2631311-CDS-H-canaliculatus_F_contig13685:232..3301696845682.2631311-CDS-H-canaliculatus_F_contig13685:232..330Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13685 233..330 +
1622929109.0167522-CDS-H-canaliculatus_F_contig13685:1786..19821622929109.0167522-CDS-H-canaliculatus_F_contig13685:1786..1982Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13685 1787..1982 +
1696845682.2721336-CDS-H-canaliculatus_F_contig13685:1786..19821696845682.2721336-CDS-H-canaliculatus_F_contig13685:1786..1982Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13685 1787..1982 +
1622929109.0306883-CDS-H-canaliculatus_F_contig13685:2740..28421622929109.0306883-CDS-H-canaliculatus_F_contig13685:2740..2842Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13685 2741..2842 +
1696845682.280716-CDS-H-canaliculatus_F_contig13685:2740..28421696845682.280716-CDS-H-canaliculatus_F_contig13685:2740..2842Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13685 2741..2842 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13685.2957.1

>prot_H-canaliculatus_F_contig13685.2957.1 ID=prot_H-canaliculatus_F_contig13685.2957.1|Name=mRNA_H-canaliculatus_F_contig13685.2957.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=132bp
SSAKAAALSAVGALLPGLAGGSGGDADSNGNATAIAEAVVGLVRSCWEGA
GAGGRGGSGGELVPISAGRLLLSLTTVLPPSALESSQALAALLKESSQVA
ANLPVAARVLLYSSLSAFLLPPRFLQGDMGKV
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mRNA from alignment at H-canaliculatus_F_contig13685:233..2842+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13685.2957.1 ID=mRNA_H-canaliculatus_F_contig13685.2957.1|Name=mRNA_H-canaliculatus_F_contig13685.2957.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2610bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13685:233..2842+ (Hapterophycus canaliculatus Oshoro5f female)
TCGTCGGCGAAGGCGGCGGCGTTGAGCGCTGTCGGAGCGCTCCTGCCTGG
CCTAGCGGGCGGCAGCGGCGGCGACGCTGATAGCAACGGCAACGCCACGT
AAGACGCATCGCCGGGGTGGGTGGATAGGAGAATGAGAGTCCAGCTTGAT
TTTGGTCCGGGAGAGTGCACGTTGGACGAGGCTTGCCTTCGAAGACGGAT
CTCGAGGGGATCGCGTCTCGTAGGTCCATAGGTCGAGGTTTCCACGAAGC
CGGTCCGCACGGAGACGTGGGAAGCGCGAGGAGAAACCGCTCTTCCATAG
TTCTGCAAGAAATCAATAGCAATTGTGTTCATTTATTTTTTCGAGGCTGC
TGTGAAAACCCGTCAAGCCTCGTTGTCCATGATTTTGTCAAACTTTCGAT
TCGGCTTGCAAGCCCCACCCACTACCGTGTAAGAATTCTCTTTTTATTTT
TTCTTCGGTATCGTCCGGGTGTCGTCTGACCGATGGTCCAGCGGCGAGCA
GGAGGCAAAGCAAGCGCGGCCTTGATGTGTTCTCCGCTTTGATCGGTGCA
TGCCTCGTCCACGAGCGTACTTGGCATTCATCCGCGTACGGTACGCGAGT
GCAGTTGTACCATGGCGTTGATTTCCCCCGCCCCGACGGCCCATCGCCCA
AAAGCTCCGGCAGCCCGCGGTCAGCCAAGGCCATGCACGCCGCGCCCGAA
CACAGGAAAAAAACCGGCACCAGGCCCGTGGCCCACCCCGGGGGGTACGC
GCGCCGCGCACACGGGGCGCCCCTCCCCGGATGGCCGAAACACGCCTGCC
GGGTCTTGGACGCTAGAAACCTTCGCACTCCGCACGCGGGTACGTGTACA
CCCGCACGGGCGCGGCGGCCCCACCCGTGGGTCGTGGGAAGGGAGAGTCG
AGGTCCGGAAAAGTTCGGAACCGCCTTGGCGCCAGTAAGCTGGCTCTTAA
GGGCCGCCTCCACGCGCGTCAGGAAGGCCGGGGGGCCGAAAGATGGATAA
GTGCTGGAGCGCTCAAGCGTTTTCTGGGGTGCTTTCGCCGCTGCCTGTCG
GCGAAGAGCGCTTCCCGCCAGGACGCGGTTGTCTTTTTTTTGTTTCGTGG
CCGAGAACGGCTGGGTGGCCACCGACCTGTGCCTGTGCTTCGCCCTCGCT
TTTTCAGCCGCGCAGCAGGTCTCCCTTTTGCTGTCTTGCTGTGCTGAAAG
GGCGCGCACCAGCCGTGCTGAAAGGGCGCGTCGATAAGAATTCGGACCCA
CGTCATGATGTATACACCTCTGGCTGGATTATTCCCGCCGCGTTTTGTTG
TGCGCCGCCGACGCCGATAGAGTGGTCATTGGTCACATCATACAACTCAT
GACGATCTTCGGTTGCGGCATTCGGGCCGTCTCGTTTTTTCTTCACCAAC
GAGCGAGTGCATGCGTGCCACAGGTCACACCATCCCCATCCTCGAATGCG
CCACCCCAACCTTTTCGTTTTCGTATCATAACCACTCCAGTTGCATTGTT
CCCGCCGCATTTTTTTCTACTCGTTTCCGTGCGGCACGGGGGGGGGACTA
ACAGGGCTATCGCAGAGGCGGTCGTGGGGCTGGTACGTAGCTGCTGGGAA
GGGGCGGGCGCAGGCGGACGCGGCGGCAGCGGGGGAGAGCTCGTTCCTAT
CTCGGCGGGAAGGCTGCTGCTGTCGCTGACGACCGTGCTGCCCCCCTCAG
CGCTCGAGTCGAGCCAGGCGCTGGCGGCTCTGCTCAAGGAATCGAGCCAG
GTAAGGTTCCCCCACCCCGTCTACGGGGCTTGCGGGGCCTCCCTCTCCGT
TGTCAGATGTCCGCCGCTTCTGTCCCGGCGAAACACGCCACTCTGGCGTA
CGTTAGATGCCTGCCTCTTCTTGCCGGCGGCGCTTGCCTCTCTTGGGGTG
CACAACCTTCAGGCTGTAGAAGTAACTATTTTCCGGCCGCGGTCCGGCGG
AGTTTTTGGTGGCGTTATAATGGAAGGGATGGGTCGAGATGAGGGCCTGA
AGTGACCTTCAGGTATCTCCATCAGTAGGTGCAAACAACAGCGGCTTGTG
TGGGCTGTCAAGTCTGCCCTCTCCTCTCCCCCCATCCCCTACCTCGTACA
TTGTACTCTGTCATTGAAGTGGAAATGCGTCGGAGGCGGGCGCACATCAT
CATCATCATCATCATCATCATAATCGTCCCGATTAGCACCCTTCGCCTCC
TCTTCCTCTTCTCGTACAAGTAGTGTTGTTGTTGCCGTCAGTGCTGCTAC
TGCTACTGCTGCTGCTGCTGCTGTCGGTGTTGTTGTTGTTGTTGTTATTA
TTGTTGTTGTTGTGTCATTGCTTTTCACCGCAGCCTACCCCAAAACACCC
ACGGGCCCCCTGGTCGACGACAGCCAAGCCAGACACCAATCGCCATGCCA
GGAGAGACCCGTGCCATTGATTCCGACCGTTGCTCGTTCACTTCTATCCG
TTCAAACACGGTGCTGTGCCGGCGACCCCTTAACCCCGCCGGCGATCCCG
GCGTGCAGGTGGCCGCCAACCTGCCGGTAGCGGCGCGCGTGCTCTTGTAC
TCCAGCCTGTCGGCGTTCCTGCTGCCCCCGAGGTTTCTACAGGGGGACAT
GGGAAAGGTA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13685:233..2842+

>mRNA_H-canaliculatus_F_contig13685.2957.1 ID=mRNA_H-canaliculatus_F_contig13685.2957.1|Name=mRNA_H-canaliculatus_F_contig13685.2957.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=792bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13685:233..2842+ (Hapterophycus canaliculatus Oshoro5f female)
TCGTCGGCGAAGGCGGCGGCGTTGAGCGCTGTCGGAGCGCTCCTGCCTGG
CCTAGCGGGCGGCAGCGGCGGCGACGCTGATAGCAACGGCAACGCCACTC
GTCGGCGAAGGCGGCGGCGTTGAGCGCTGTCGGAGCGCTCCTGCCTGGCC
TAGCGGGCGGCAGCGGCGGCGACGCTGATAGCAACGGCAACGCCACGGCT
ATCGCAGAGGCGGTCGTGGGGCTGGTACGTAGCTGCTGGGAAGGGGCGGG
CGCAGGCGGACGCGGCGGCAGCGGGGGAGAGCTCGTTCCTATCTCGGCGG
GAAGGCTGCTGCTGTCGCTGACGACCGTGCTGCCCCCCTCAGCGCTCGAG
TCGAGCCAGGCGCTGGCGGCTCTGCTCAAGGAATCGAGCCAGGGCTATCG
CAGAGGCGGTCGTGGGGCTGGTACGTAGCTGCTGGGAAGGGGCGGGCGCA
GGCGGACGCGGCGGCAGCGGGGGAGAGCTCGTTCCTATCTCGGCGGGAAG
GCTGCTGCTGTCGCTGACGACCGTGCTGCCCCCCTCAGCGCTCGAGTCGA
GCCAGGCGCTGGCGGCTCTGCTCAAGGAATCGAGCCAGGTGGCCGCCAAC
CTGCCGGTAGCGGCGCGCGTGCTCTTGTACTCCAGCCTGTCGGCGTTCCT
GCTGCCCCCGAGGTTTCTACAGGGGGACATGGGAAAGGTAGTGGCCGCCA
ACCTGCCGGTAGCGGCGCGCGTGCTCTTGTACTCCAGCCTGTCGGCGTTC
CTGCTGCCCCCGAGGTTTCTACAGGGGGACATGGGAAAGGTA
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