mRNA_H-canaliculatus_F_contig1367.2951.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1367.2951.1
Unique NamemRNA_H-canaliculatus_F_contig1367.2951.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1367.2951.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1367contigH-canaliculatus_F_contig1367:26840..27537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size700
Cds size606
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929107.7587917-UTR-H-canaliculatus_F_contig1367:26839..269311622929107.7587917-UTR-H-canaliculatus_F_contig1367:26839..26931Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1367 26840..26931 +
1696845681.715934-UTR-H-canaliculatus_F_contig1367:26839..269311696845681.715934-UTR-H-canaliculatus_F_contig1367:26839..26931Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1367 26840..26931 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929107.7749698-CDS-H-canaliculatus_F_contig1367:26931..275371622929107.7749698-CDS-H-canaliculatus_F_contig1367:26931..27537Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1367 26932..27537 +
1696845681.7252574-CDS-H-canaliculatus_F_contig1367:26931..275371696845681.7252574-CDS-H-canaliculatus_F_contig1367:26931..27537Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1367 26932..27537 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1367.2951.1prot_H-canaliculatus_F_contig1367.2951.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1367 26932..27537 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1367.2951.1

>prot_H-canaliculatus_F_contig1367.2951.1 ID=prot_H-canaliculatus_F_contig1367.2951.1|Name=mRNA_H-canaliculatus_F_contig1367.2951.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=202bp
MLMLTRFLLPNGVPFTPPNVLVPTRCSHEMPALSRSTRNQCFLFSRSLLK
LSPRETKSRPCNASHIRMVPGPGACRHELLTLTGTASQTGRPLLQHVSFT
LTPNRPQKRRLRFSRYAAQLSVEFPPFSTLPRGWGVADAAQRPDLGIMTE
RGSRGQRNSRATYAGAVITVYPLCALDSTPTVRSSYSIEKLIQHLLFFSF
LY
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mRNA from alignment at H-canaliculatus_F_contig1367:26840..27537+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1367.2951.1 ID=mRNA_H-canaliculatus_F_contig1367.2951.1|Name=mRNA_H-canaliculatus_F_contig1367.2951.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=698bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1367:26840..27537+ (Hapterophycus canaliculatus Oshoro5f female)
GTGACGAATATTAACATGTGTCGTGCGTAAAGGTTTCATTGCGCGGCGGG
GCTGACCATCTATTTCTCCCACGCCTTCGTGCCACCCCCCCAATGCTGAT
GCTAACCCGCTTCCTGCTGCCAAATGGCGTTCCCTTCACTCCTCCGAACG
TGCTCGTTCCCACGAGATGTTCTCACGAGATGCCGGCCCTTTCCAGGTCG
ACCCGCAACCAATGTTTTCTATTTTCAAGGAGTCTCCTCAAGTTATCGCC
ACGGGAGACCAAGAGCCGCCCCTGTAATGCCTCACATATACGTATGGTTC
CTGGACCTGGTGCCTGCCGCCACGAGTTATTGACACTCACCGGCACAGCG
AGTCAAACGGGGCGCCCTCTGCTCCAACACGTCTCTTTTACTTTAACACC
CAACCGACCCCAAAAAAGAAGACTTCGTTTCTCAAGGTACGCTGCACAGC
TTTCGGTCGAGTTTCCACCGTTTTCGACGCTACCTCGAGGCTGGGGTGTA
GCGGATGCAGCACAACGACCTGACCTAGGCATCATGACGGAAAGAGGTAG
CCGGGGTCAACGTAATAGTCGAGCTACATATGCTGGAGCTGTGATAACCG
TCTATCCTCTGTGCGCGTTGGATTCGACTCCGACCGTGAGATCGAGCTAC
TCCATAGAAAAACTTATCCAACACCTTCTTTTTTTTTCCTTTTTGTAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1367:26840..27537+

>mRNA_H-canaliculatus_F_contig1367.2951.1 ID=mRNA_H-canaliculatus_F_contig1367.2951.1|Name=mRNA_H-canaliculatus_F_contig1367.2951.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1212bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1367:26840..27537+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTGATGCTAACCCGCTTCCTGCTGCCAAATGGCGTTCCCTTCACTCC
TCCGAACGTGCTCGTTCCCACGAGATGTTCTCACGAGATGCCGGCCCTTT
CCAGGTCGACCCGCAACCAATGTTTTCTATTTTCAAGGAGTCTCCTCAAG
TTATCGCCACGGGAGACCAAGAGCCGCCCCTGTAATGCCTCACATATACG
TATGGTTCCTGGACCTGGTGCCTGCCGCCACGAGTTATTGACACTCACCG
GCACAGCGAGTCAAACGGGGCGCCCTCTGCTCCAACACGTCTCTTTTACT
TTAACACCCAACCGACCCCAAAAAAGAAGACTTCGTTTCTCAAGGTACGC
TGCACAGCTTTCGGTCGAGTTTCCACCGTTTTCGACGCTACCTCGAGGCT
GGGGTGTAGCGGATGCAGCACAACGACCTGACCTAGGCATCATGACGGAA
AGAGGTAGCCGGGGTCAACGTAATAGTCGAGCTACATATGCTGGAGCTGT
GATAACCGTCTATCCTCTGTGCGCGTTGGATTCGACTCCGACCGTGAGAT
CGAGCTACTCCATAGAAAAACTTATCCAACACCTTCTTTTTTTTTCCTTT
TTGTACATGCTGATGCTAACCCGCTTCCTGCTGCCAAATGGCGTTCCCTT
CACTCCTCCGAACGTGCTCGTTCCCACGAGATGTTCTCACGAGATGCCGG
CCCTTTCCAGGTCGACCCGCAACCAATGTTTTCTATTTTCAAGGAGTCTC
CTCAAGTTATCGCCACGGGAGACCAAGAGCCGCCCCTGTAATGCCTCACA
TATACGTATGGTTCCTGGACCTGGTGCCTGCCGCCACGAGTTATTGACAC
TCACCGGCACAGCGAGTCAAACGGGGCGCCCTCTGCTCCAACACGTCTCT
TTTACTTTAACACCCAACCGACCCCAAAAAAGAAGACTTCGTTTCTCAAG
GTACGCTGCACAGCTTTCGGTCGAGTTTCCACCGTTTTCGACGCTACCTC
GAGGCTGGGGTGTAGCGGATGCAGCACAACGACCTGACCTAGGCATCATG
ACGGAAAGAGGTAGCCGGGGTCAACGTAATAGTCGAGCTACATATGCTGG
AGCTGTGATAACCGTCTATCCTCTGTGCGCGTTGGATTCGACTCCGACCG
TGAGATCGAGCTACTCCATAGAAAAACTTATCCAACACCTTCTTTTTTTT
TCCTTTTTGTAC
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