prot_H-canaliculatus_F_contig1366.2941.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig1366.2941.1
Unique Nameprot_H-canaliculatus_F_contig1366.2941.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length685
Homology
BLAST of mRNA_H-canaliculatus_F_contig1366.2941.1 vs. uniprot
Match: A0A6H5KVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVS6_9PHAE)

HSP 1 Score: 452 bits (1162), Expect = 3.230e-145
Identity = 296/513 (57.70%), Postives = 339/513 (66.08%), Query Frame = 0
Query:  144 NAGNGTTDVTWDNEAGVHVTEGFEDDRWTSANYVAKITGLLYNDITGWANAYEEENPVYQPISACDLGSDVDNDDDTDGGFSHTGSSDSYDFVWAAFKRLADNGVIFEHEVVLKPKRTVMCLFPEGGIDATEVVDAADNEEVGEYFRDTTECVRALATAAAAGESPQRGPACASGGKGDDGGDGWAGEGGVSVMLGVGNCLQGHDNAFLYHNSTSYLRLPLNNTVSPPALSWPPQAGATVG----------GAG--GGLTARLVRYAPELPPGPIQPPGGPDRAYIVYVAIGLAALGLTVAALRALCL--RKQERVAYGRSGRGGINSGHGGGGHG---------GARALFSSSAGLGWRSGGRSGSDFG-EFDFS------VGDE-----YEGALFPADNYSSGGLSSSRXXXXXXXXXWRGRGKSPPSEVGPMEVPLLKQSDPQMRMRDGARGGSRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSRVLGTMGVAPAA 621
            N GNGTT V W+N+A V V+ GF++ RW SANY+AKITGLLYNDI GW++ Y E+NP +QP+SAC   SD   D D    F+H GS+DSYDFVWAAF RLA NGVIF+ EVV+KPKRTVMCLFPEGG+DA E+V A  NEE+ EY+RDT +CVR+LA AAA+G S   GPAC S G    GGDGWAGEGGVS+MLG+G+CL G +NAFLYHNS++YLRLPLN T                           G+G  GG+TARLVRY+P LPP P QPPGGPDRAYIVY+A+GLAALGL VA LRAL    R+++  AYG  G         G  HG         GA  LFSSS+GLGWRSGGR GSDFG  FD        VGD      YEGA+FPADNYSSGGLS S            G GK PP+ VGPMEVPLL QSD  +R+RD   G + +     XXXXXXXXXXXXXXXXXXXXX              FSRVLGTMG  P A
Sbjct:  239 NGGNGTTPVAWNNDAVVRVSSGFDEKRWISANYIAKITGLLYNDIAGWSSIYREKNPSFQPLSACGGSSDRGGDGD----FAHRGSADSYDFVWAAFDRLAKNGVIFDQEVVIKPKRTVMCLFPEGGVDAAELVHADGNEEIAEYYRDTGDCVRSLAAAAASGNSSYLGPACPSNG---GGGDGWAGEGGVSLMLGLGDCLAGQENAFLYHNSSAYLRLPLNVTSVAEXXXXXXXXXXXXXXXXXXMRKEHGSGHVGGMTARLVRYSPALPPRPEQPPGGPDRAYIVYLAVGLAALGLAVAGLRALYRWRRREKLAAYGSEG---------GSVHGXXXXXXXXFGAGGLFSSSSGLGWRSGGRGGSDFGGNFDXXXXXXXXVGDSGHGYTYEGAMFPADNYSSGGLSGSSRSHGGWRSGSGGSGK-PPASVGPMEVPLLNQSDSPLRLRDSNSGATAATSPATXXXXXXXXXXXXXXXXXXXXXRDSSPSP-------FSRVLGTMGSGPVA 727          
BLAST of mRNA_H-canaliculatus_F_contig1366.2941.1 vs. uniprot
Match: D8LSH7_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSH7_ECTSI)

HSP 1 Score: 441 bits (1133), Expect = 3.590e-143
Identity = 299/513 (58.28%), Postives = 345/513 (67.25%), Query Frame = 0
Query:  144 NAGNGTTDVTWDNEAGVHVTEGFEDDRWTSANYVAKITGLLYNDITGWANAYEEENPVYQPISACDLGSDVDNDDDTDGGFSHTGSSDSYDFVWAAFKRLADNGVIFEHEVVLKPKRTVMCLFPEGGIDATEVVDAADNEEVGEYFRDTTECVRALATAAAAGESPQRGPACASGGKGDDGGDGWAGEGGVSVMLGVGNCLQGHDNAFLYHNSTSYLRLPLNNT-VSPPA---------------LSWPPQAGATVGGAGGGLTARLVRYAPELPPGPIQPPGGPDRAYIVYVAIGLAALGLTVAALRALCL--RKQERVAYGRSGRGGINSGHGGGGHG-----GARALFSSSAGLGWRSGGRSGSDFG-EFDFS------VGDE-----YEGALFPADNYSSGGLSSSRXXXXXXXXXWRGRGKSPPSEVGPMEVPLLKQSDPQMRMRDGARGGSRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSRVLGTMGVAPAA 621
            + GNGTT VTW+N+A V V+ GF++ RW SANY+AKITGLLYNDITGW++ Y E+ P +QP+SAC  GS   ND   DG F+H GS+DSYDFVWAAF RL +       EVV+KPKRTVMCLFPEGG+DA E+V A  NEE+ EY+RDT ECVR+LA AAA+G S   GPAC S G    GGDGWAGEGGVS+MLG+G+CL G +NAFLYHNS++YLRLPLN T V+  A                    Q G+   G  GG+TARLVRY+P LPP P QPPGGPDRAYIVY+A+GLAA+GL VA LRAL    R+++  AYG  G     S HGG         GA   FSSS+GLGWRSGGR GSDFG  FD        VGD      YEGA+FPADNYSSGGLS S            G GK PP+ VGPMEVPLL QSD  +R+RDG+ G + +     XXXXXXXXXXXXXXXXXXXXXXX            FSRVLGTMG  PAA
Sbjct:   84 DGGNGTTPVTWNNDAVVRVSSGFDEKRWISANYIAKITGLLYNDITGWSSTYREKKPSFQPLSACG-GS---NDRGGDGDFAHRGSADSYDFVWAAFDRLGE-------EVVIKPKRTVMCLFPEGGVDAAELVHADGNEEIAEYYRDTGECVRSLAAAAASGNSSYSGPACPSNG---GGGDGWAGEGGVSLMLGLGDCLAGQENAFLYHNSSAYLRLPLNVTSVAEEAEXXXXXXXXXXXXXXXXXXXQHGS---GHVGGMTARLVRYSPALPPRPEQPPGGPDRAYIVYLAVGLAAVGLAVAGLRALYRWRRREKLAAYGSEG----GSVHGGXXXXXXXXFGAGGRFSSSSGLGWRSGGRGGSDFGGNFDXXXXXXXXVGDSGHGYTYEGAMFPADNYSSGGLSGSSRSQGGWRSGGGGSGK-PPAAVGPMEVPLLNQSDSPLRLRDGSSGATAATSPATXXXXXXXXXXXXXXXXXXXXXXXRDSSPSP-----FSRVLGTMGSGPAA 569          
BLAST of mRNA_H-canaliculatus_F_contig1366.2941.1 vs. uniprot
Match: A0A6S8UWF4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8UWF4_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 3.690e-5
Identity = 47/154 (30.52%), Postives = 74/154 (48.05%), Query Frame = 0
Query:  152 VTWDNEAGVHVTEGFEDDRWTSANYVAKITG-LLYNDITGWANAYEEENPVYQPISACDLGSDVDNDDDTDGGFSHTGSSDSYDFVWAAFKRLADNGVIFEHEVVLKPKRTVMCLFPEGGIDATEVVDAADNEEVGEYFRDTTECVRALATAAA 304
            ++W+N A ++     E++ W +A Y+A ITG +L N +  +   Y   +P YQPI   +  +          G     SS+S DFVW  F++LAD  V  +   +L PKR  + L  +      E ++   +  VG+   D  E  R +A AAA
Sbjct:  136 LSWENHAKIYYGLQIEEEEWDNAYYMAPITGAVLSNIMHDYIFDYPILHPRYQPIRVVEKST----------GALVLNSSNSDDFVWNVFQKLADMYVAVDP--ILAPKRYALHLHVDKVGRDVEKLEGTTHVVVGQNGEDGNEIKRNVANAAA 277          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1366.2941.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KVS6_9PHAE3.230e-14557.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSH7_ECTSI3.590e-14358.28Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6S8UWF4_9STRA3.690e-530.52Hypothetical protein (Fragment) n=1 Tax=Chaetocero... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026138Ceroid-lipofuscinosis neuronal protein 5PANTHERPTHR15380CEROID-LIPOFUSCINOSIS, NEURONAL 5coord: 147..270
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 416..437
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..415
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 438..685
NoneNo IPR availableTMHMMTMhelixcoord: 417..439

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1366contigH-canaliculatus_F_contig1366:15968..20019 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1366.2941.1mRNA_H-canaliculatus_F_contig1366.2941.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig1366 15968..20019 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig1366.2941.1 ID=prot_H-canaliculatus_F_contig1366.2941.1|Name=mRNA_H-canaliculatus_F_contig1366.2941.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=685bp
APVTPSPPPVASSAPTSSGTAAPSSPAPSASPAPLVTAAPSSLSTAAPAG
KGTTAPTTEIGTPSPTAPGGNGTDTYTHGEGSSGAGSGGGRGGFASDQLA
AHGEESNLVEAAGGGVLGGGRKGADGSWRWGGGGGGGGGGWGSNAGNGTT
DVTWDNEAGVHVTEGFEDDRWTSANYVAKITGLLYNDITGWANAYEEENP
VYQPISACDLGSDVDNDDDTDGGFSHTGSSDSYDFVWAAFKRLADNGVIF
EHEVVLKPKRTVMCLFPEGGIDATEVVDAADNEEVGEYFRDTTECVRALA
TAAAAGESPQRGPACASGGKGDDGGDGWAGEGGVSVMLGVGNCLQGHDNA
FLYHNSTSYLRLPLNNTVSPPALSWPPQAGATVGGAGGGLTARLVRYAPE
LPPGPIQPPGGPDRAYIVYVAIGLAALGLTVAALRALCLRKQERVAYGRS
GRGGINSGHGGGGHGGARALFSSSAGLGWRSGGRSGSDFGEFDFSVGDEY
EGALFPADNYSSGGLSSSRSQSGGGGGGWRGRGKSPPSEVGPMEVPLLKQ
SDPQMRMRDGARGGSRSAAAAAAAAAAAATTTTSSSRRSREGGGNGGGNG
GESPPPPFSRVLGTMGVAPAAGRRKSGGGGGGGGRRAREGDRFSGRRQKR
SSPAAARPGEGGAADDDSDDMADQQGPFGSGSGGS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR026138CLN5