mRNA_H-canaliculatus_F_contig1366.2942.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1366.2942.1
Unique NamemRNA_H-canaliculatus_F_contig1366.2942.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1366.2942.1 vs. uniprot
Match: D8LSH7_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSH7_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 4.740e-5
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 3 
Query:    3 VTEGFEDDRWTSANYVAKITGLLYNDITGGWSACH 107
            V+ GF++ RW SANY+AKITGLLYNDITG WS+ +
Sbjct:  102 VSSGFDEKRWISANYIAKITGLLYNDITG-WSSTY 135
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1366.2942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSH7_ECTSI4.740e-568.57Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1366contigH-canaliculatus_F_contig1366:16449..17213 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size765
Cds size420
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1366.2942.1prot_H-canaliculatus_F_contig1366.2942.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1366 16765..17184 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929106.8130891-UTR-H-canaliculatus_F_contig1366:16448..167641622929106.8130891-UTR-H-canaliculatus_F_contig1366:16448..16764Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1366 16449..16764 +
1696845681.4213858-UTR-H-canaliculatus_F_contig1366:16448..167641696845681.4213858-UTR-H-canaliculatus_F_contig1366:16448..16764Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1366 16449..16764 +
1622929106.8436337-UTR-H-canaliculatus_F_contig1366:17184..172131622929106.8436337-UTR-H-canaliculatus_F_contig1366:17184..17213Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1366 17185..17213 +
1696845681.4449594-UTR-H-canaliculatus_F_contig1366:17184..172131696845681.4449594-UTR-H-canaliculatus_F_contig1366:17184..17213Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1366 17185..17213 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929106.828943-CDS-H-canaliculatus_F_contig1366:16764..171841622929106.828943-CDS-H-canaliculatus_F_contig1366:16764..17184Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1366 16765..17184 +
1696845681.4337578-CDS-H-canaliculatus_F_contig1366:16764..171841696845681.4337578-CDS-H-canaliculatus_F_contig1366:16764..17184Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1366 16765..17184 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1366.2942.1

>prot_H-canaliculatus_F_contig1366.2942.1 ID=prot_H-canaliculatus_F_contig1366.2942.1|Name=mRNA_H-canaliculatus_F_contig1366.2942.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=140bp
MYLTKITKTPAVYFHAEIDLYFAQGAIWLFVVTVVVVFVVGIVGVPSARA
CAVLVRRSRSHALRRLRRPKRPDWRSSGVRIGTTQHGTRLRPSIRGALAP
CPYATQGVSGRYSVSCCVSGYSACNLSSLDPRSSPGSDR*
back to top

mRNA from alignment at H-canaliculatus_F_contig1366:16449..17213+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1366.2942.1 ID=mRNA_H-canaliculatus_F_contig1366.2942.1|Name=mRNA_H-canaliculatus_F_contig1366.2942.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=765bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1366:16449..17213+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTGACGGAGGGATTTGAAGACGACAGATGGACGTCCGCCAACTACGTC
GCAAAAATTACGGGCCTGCTGTACAACGATATCACGGGTGGGTGGTCGGC
GTGCCATGCCGTGCTTCGTGTTTCGTCGGGTGATGGAAACGTCGAATCGG
GTTTGGGTAGAACAACGGTTATCGCACATGTGTCTCGTGTTTTTTCTTGC
GGCGAATTGCGGGGGTTGTTCGCCTACAATGACGCCGTGAAGTGGAACAT
CCGTGGCTGACATCGAAATTTATCGGAGCGTCCGAGAACAAGGTGTGATG
TAATGGGGTTTGACTGATGTACTTGACAAAAATTACGAAAACGCCAGCGG
TTTACTTCCATGCTGAGATAGACTTGTATTTTGCTCAGGGGGCTATTTGG
TTGTTTGTTGTCACTGTTGTTGTTGTTTTTGTTGTTGGTATTGTTGGTGT
TCCGTCGGCTCGTGCTTGTGCCGTATTGGTTCGGCGTTCTCGGTCACACG
CTCTCCGTCGTCTTCGCCGACCGAAACGTCCGGATTGGCGATCAAGTGGG
GTTCGAATAGGCACGACACAGCATGGCACAAGACTTCGGCCGTCGATACG
TGGAGCGCTTGCGCCCTGCCCATACGCCACGCAGGGTGTGTCAGGGAGAT
ACAGCGTCTCTTGCTGCGTCTCTGGCTACTCTGCTTGTAATCTCTCAAGT
CTCGACCCAAGATCCAGCCCAGGAAGTGACCGATGATCTTACAAACGTAT
GTCTGACTTAACCCG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1366:16449..17213+

>mRNA_H-canaliculatus_F_contig1366.2942.1 ID=mRNA_H-canaliculatus_F_contig1366.2942.1|Name=mRNA_H-canaliculatus_F_contig1366.2942.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=840bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1366:16449..17213+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTACTTGACAAAAATTACGAAAACGCCAGCGGTTTACTTCCATGCTGA
GATAGACTTGTATTTTGCTCAGGGGGCTATTTGGTTGTTTGTTGTCACTG
TTGTTGTTGTTTTTGTTGTTGGTATTGTTGGTGTTCCGTCGGCTCGTGCT
TGTGCCGTATTGGTTCGGCGTTCTCGGTCACACGCTCTCCGTCGTCTTCG
CCGACCGAAACGTCCGGATTGGCGATCAAGTGGGGTTCGAATAGGCACGA
CACAGCATGGCACAAGACTTCGGCCGTCGATACGTGGAGCGCTTGCGCCC
TGCCCATACGCCACGCAGGGTGTGTCAGGGAGATACAGCGTCTCTTGCTG
CGTCTCTGGCTACTCTGCTTGTAATCTCTCAAGTCTCGACCCAAGATCCA
GCCCAGGAAGTGACCGATGAATGTACTTGACAAAAATTACGAAAACGCCA
GCGGTTTACTTCCATGCTGAGATAGACTTGTATTTTGCTCAGGGGGCTAT
TTGGTTGTTTGTTGTCACTGTTGTTGTTGTTTTTGTTGTTGGTATTGTTG
GTGTTCCGTCGGCTCGTGCTTGTGCCGTATTGGTTCGGCGTTCTCGGTCA
CACGCTCTCCGTCGTCTTCGCCGACCGAAACGTCCGGATTGGCGATCAAG
TGGGGTTCGAATAGGCACGACACAGCATGGCACAAGACTTCGGCCGTCGA
TACGTGGAGCGCTTGCGCCCTGCCCATACGCCACGCAGGGTGTGTCAGGG
AGATACAGCGTCTCTTGCTGCGTCTCTGGCTACTCTGCTTGTAATCTCTC
AAGTCTCGACCCAAGATCCAGCCCAGGAAGTGACCGATGA
back to top