mRNA_H-canaliculatus_F_contig1365.2937.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1365.2937.1
Unique NamemRNA_H-canaliculatus_F_contig1365.2937.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1365.2937.1 vs. uniprot
Match: UPI001FB7CC58 (serine/threonine-protein kinase/endoribonuclease IRE1-like n=1 Tax=Penaeus chinensis TaxID=139456 RepID=UPI001FB7CC58)

HSP 1 Score: 47.0 bits (110), Expect = 8.730e-5
Identity = 24/52 (46.15%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:    4 LAQTVMDLNKIGVAHNDVTPNNVMLEQEADGDIVSYRTTLIDFGTATILSVS 159
            LA  V ++++ G AHND+ P+NV+LE   DG +   R  +IDFG  T L VS
Sbjct:   29 LALKVREIHQAGFAHNDLKPDNVILETSTDGAV---RARMIDFGLCTRLGVS 77
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1365.2937.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001FB7CC588.730e-546.15serine/threonine-protein kinase/endoribonuclease I... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1365contigH-canaliculatus_F_contig1365:27020..27184 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionProtein kinase domain
Ec32 orthologEc-07_004500.1
Exons1
Model size165
Cds size147
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929106.5996623-CDS-H-canaliculatus_F_contig1365:27019..271661622929106.5996623-CDS-H-canaliculatus_F_contig1365:27019..27166Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1365 27020..27166 -
1696845681.3638442-CDS-H-canaliculatus_F_contig1365:27019..271661696845681.3638442-CDS-H-canaliculatus_F_contig1365:27019..27166Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1365 27020..27166 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929106.6295266-UTR-H-canaliculatus_F_contig1365:27166..271841622929106.6295266-UTR-H-canaliculatus_F_contig1365:27166..27184Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1365 27167..27184 -
1696845681.372577-UTR-H-canaliculatus_F_contig1365:27166..271841696845681.372577-UTR-H-canaliculatus_F_contig1365:27166..27184Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1365 27167..27184 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1365.2937.1prot_H-canaliculatus_F_contig1365.2937.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1365 27020..27166 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1365.2937.1

>prot_H-canaliculatus_F_contig1365.2937.1 ID=prot_H-canaliculatus_F_contig1365.2937.1|Name=mRNA_H-canaliculatus_F_contig1365.2937.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=49bp
MDLNKIGVAHNDVTPNNVMLEQEADGDIVSYRTTLIDFGTATILSVSS*
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mRNA from alignment at H-canaliculatus_F_contig1365:27020..27184-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1365.2937.1 ID=mRNA_H-canaliculatus_F_contig1365.2937.1|Name=mRNA_H-canaliculatus_F_contig1365.2937.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=165bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1365:27020..27184- (Hapterophycus canaliculatus Oshoro5f female)
CAGCTAGCCCAGACGGTAATGGACCTCAACAAGATCGGCGTCGCCCACAA
CGATGTTACTCCGAACAATGTTATGCTGGAGCAGGAGGCGGACGGCGACA
TTGTTTCTTACCGCACAACGCTAATCGATTTCGGAACGGCGACAATCCTC
TCCGTGAGTTCATGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1365:27020..27184-

>mRNA_H-canaliculatus_F_contig1365.2937.1 ID=mRNA_H-canaliculatus_F_contig1365.2937.1|Name=mRNA_H-canaliculatus_F_contig1365.2937.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=294bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1365:27020..27184- (Hapterophycus canaliculatus Oshoro5f female)
ATGGACCTCAACAAGATCGGCGTCGCCCACAACGATGTTACTCCGAACAA
TGTTATGCTGGAGCAGGAGGCGGACGGCGACATTGTTTCTTACCGCACAA
CGCTAATCGATTTCGGAACGGCGACAATCCTCTCCGTGAGTTCATGAATG
GACCTCAACAAGATCGGCGTCGCCCACAACGATGTTACTCCGAACAATGT
TATGCTGGAGCAGGAGGCGGACGGCGACATTGTTTCTTACCGCACAACGC
TAATCGATTTCGGAACGGCGACAATCCTCTCCGTGAGTTCATGA
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