mRNA_H-canaliculatus_F_contig1365.2936.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1365.2936.1
Unique NamemRNA_H-canaliculatus_F_contig1365.2936.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1365.2936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1365contigH-canaliculatus_F_contig1365:17106..17780 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size358
Cds size348
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1365.2936.1prot_H-canaliculatus_F_contig1365.2936.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1365 17116..17780 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929106.1387134-UTR-H-canaliculatus_F_contig1365:17105..171151622929106.1387134-UTR-H-canaliculatus_F_contig1365:17105..17115Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1365 17106..17115 -
1696845681.2337646-UTR-H-canaliculatus_F_contig1365:17105..171151696845681.2337646-UTR-H-canaliculatus_F_contig1365:17105..17115Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1365 17106..17115 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929106.151122-CDS-H-canaliculatus_F_contig1365:17115..172441622929106.151122-CDS-H-canaliculatus_F_contig1365:17115..17244Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1365 17116..17244 -
1696845681.2474163-CDS-H-canaliculatus_F_contig1365:17115..172441696845681.2474163-CDS-H-canaliculatus_F_contig1365:17115..17244Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1365 17116..17244 -
1622929106.161928-CDS-H-canaliculatus_F_contig1365:17561..177801622929106.161928-CDS-H-canaliculatus_F_contig1365:17561..17780Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1365 17562..17780 -
1696845681.256198-CDS-H-canaliculatus_F_contig1365:17561..177801696845681.256198-CDS-H-canaliculatus_F_contig1365:17561..17780Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1365 17562..17780 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1365.2936.1

>prot_H-canaliculatus_F_contig1365.2936.1 ID=prot_H-canaliculatus_F_contig1365.2936.1|Name=mRNA_H-canaliculatus_F_contig1365.2936.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=116bp
GQGSTRLQRHGGGGGSETGVDILNAACESAAPVPVAGPTKRAKGEKTATG
AKTAKSAVGSTVEKKTTESLRAKDARETGCEGPKTLSKTIAKRKRVAETA
AAAEWDESSKRLRKR*
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mRNA from alignment at H-canaliculatus_F_contig1365:17106..17780-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1365.2936.1 ID=mRNA_H-canaliculatus_F_contig1365.2936.1|Name=mRNA_H-canaliculatus_F_contig1365.2936.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=675bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1365:17106..17780- (Hapterophycus canaliculatus Oshoro5f female)
GGTCAGGGGTCGACGAGGTTGCAGAGGCACGGCGGTGGTGGAGGCTCAGA
GACCGGGGTGGACATCCTCAACGCGGCATGCGAGTCGGCGGCCCCGGTGC
CGGTCGCGGGTCCGACGAAGAGAGCAAAGGGGGAGAAGACGGCGACGGGG
GCGAAAACGGCGAAGTCGGCGGTGGGGTCAACCGTCGAGAAGAAGACAAC
GGAGAGCCTCAGGGCCAAGGTATAGTGTGGGTCTCTAGTGCCTCGTTTTT
TTCAGACAATGTCTTTTTGGAGTAACGATCTCTAAAATAATGAATTCGTG
GTAGAAGTATTTTCCTTCCGAAGTTGCGCTTGCCGTAGCAACCACAGTCA
TGCTTTTACTTGCACATGGACAGTCTGTAGTGGTCTGGAGCGTGCTTCTG
TAGCGCGGTACAGATCGCATGTTTGTGCACCCTGAGCACCTTCCAGTGTT
CGAATCAAACCGGTGATACAAGTGCCAACTGCATGCTACGTCCATCGTTC
TGCATTATTTTTGTGTAATTCCAAACAAATCCCTAGGACGCGAGGGAGAC
GGGGTGTGAGGGCCCCAAGACCCTCAGCAAGACCATCGCGAAGCGAAAGC
GGGTAGCGGAGACGGCGGCGGCGGCGGAGTGGGATGAGTCGTCGAAGCGA
TTGCGCAAGCGTTAAACTCCTCAGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1365:17106..17780-

>mRNA_H-canaliculatus_F_contig1365.2936.1 ID=mRNA_H-canaliculatus_F_contig1365.2936.1|Name=mRNA_H-canaliculatus_F_contig1365.2936.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=696bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1365:17106..17780- (Hapterophycus canaliculatus Oshoro5f female)
GGTCAGGGGTCGACGAGGTTGCAGAGGCACGGCGGTGGTGGAGGCTCAGA
GACCGGGGTGGACATCCTCAACGCGGCATGCGAGTCGGCGGCCCCGGTGC
CGGTCGCGGGTCCGACGAAGAGAGCAAAGGGGGAGAAGACGGCGACGGGG
GCGAAAACGGCGAAGTCGGCGGTGGGGTCAACCGTCGAGAAGAAGACAAC
GGAGAGCCTCAGGGCCAAGGGTCAGGGGTCGACGAGGTTGCAGAGGCACG
GCGGTGGTGGAGGCTCAGAGACCGGGGTGGACATCCTCAACGCGGCATGC
GAGTCGGCGGCCCCGGTGCCGGTCGCGGGTCCGACGAAGAGAGCAAAGGG
GGAGAAGACGGCGACGGGGGCGAAAACGGCGAAGTCGGCGGTGGGGTCAA
CCGTCGAGAAGAAGACAACGGAGAGCCTCAGGGCCAAGGACGCGAGGGAG
ACGGGGTGTGAGGGCCCCAAGACCCTCAGCAAGACCATCGCGAAGCGAAA
GCGGGTAGCGGAGACGGCGGCGGCGGCGGAGTGGGATGAGTCGTCGAAGC
GATTGCGCAAGCGTTAAGACGCGAGGGAGACGGGGTGTGAGGGCCCCAAG
ACCCTCAGCAAGACCATCGCGAAGCGAAAGCGGGTAGCGGAGACGGCGGC
GGCGGCGGAGTGGGATGAGTCGTCGAAGCGATTGCGCAAGCGTTAA
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