mRNA_H-canaliculatus_F_contig13638.2929.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13638.2929.1
Unique NamemRNA_H-canaliculatus_F_contig13638.2929.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig13638.2929.1 vs. uniprot
Match: A0A6H5K8D9_9PHAE (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D9_9PHAE)

HSP 1 Score: 239 bits (610), Expect = 8.420e-72
Identity = 115/130 (88.46%), Postives = 124/130 (95.38%), Query Frame = 1
Query:    7 RYRRYKLGDGKDFDSLFFPEKESLLKTLGNFEAKRGKYAIKGYPHKLGLLLYGPPGTGKTSLIKALACQTGRHIIQVPLGRVNTNQDLMNIMLDESFPVAKQDLPISLKHENVIFVFEDVDTASKIVKAR 396
            RY+RY+LGD KDFDSLFFPEKE LL+ L NFEAKRG+YAI+GYPHKLGLLL+GPPGTGKTSLIKALAC+TGRHIIQVPLGRVNTNQDLMNIMLDESFPVAKQ+LPISL H+NVIFVFEDVD ASKIVKAR
Sbjct:  322 RYKRYRLGDVKDFDSLFFPEKEQLLRVLENFEAKRGRYAIRGYPHKLGLLLHGPPGTGKTSLIKALACRTGRHIIQVPLGRVNTNQDLMNIMLDESFPVAKQELPISLTHDNVIFVFEDVDAASKIVKAR 451          
BLAST of mRNA_H-canaliculatus_F_contig13638.2929.1 vs. uniprot
Match: D7FQ71_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ71_ECTSI)

HSP 1 Score: 224 bits (571), Expect = 8.510e-70
Identity = 105/129 (81.40%), Postives = 118/129 (91.47%), Query Frame = 1
Query:   10 YRRYKLGDGKDFDSLFFPEKESLLKTLGNFEAKRGKYAIKGYPHKLGLLLYGPPGTGKTSLIKALACQTGRHIIQVPLGRVNTNQDLMNIMLDESFPVAKQDLPISLKHENVIFVFEDVDTASKIVKAR 396
            Y+RYKLGD KDFDSLFFPEKE LL+ L NFEAKRG+YAI+GYPHKLG LL+GPPGTGKTSLIKALAC+TGRHIIQVPLGR+ TN+DLMN+M D+SF VA Q+LP+ LKHENVI+VFEDVD ASKIVKAR
Sbjct:   49 YKRYKLGDVKDFDSLFFPEKEQLLRALENFEAKRGRYAIRGYPHKLGFLLHGPPGTGKTSLIKALACRTGRHIIQVPLGRIKTNEDLMNVMFDQSFRVATQELPVPLKHENVIYVFEDVDAASKIVKAR 177          
BLAST of mRNA_H-canaliculatus_F_contig13638.2929.1 vs. uniprot
Match: A0A6H5K675_9PHAE (ATPase_AAA_core domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K675_9PHAE)

HSP 1 Score: 218 bits (554), Expect = 2.030e-68
Identity = 104/129 (80.62%), Postives = 115/129 (89.15%), Query Frame = 1
Query:   10 YRRYKLGDGKDFDSLFFPEKESLLKTLGNFEAKRGKYAIKGYPHKLGLLLYGPPGTGKTSLIKALACQTGRHIIQVPLGRVNTNQDLMNIMLDESFPVAKQDLPISLKHENVIFVFEDVDTASKIVKAR 396
            Y+RYKLGD KDFDSLFFPEKE LL+ L NFEAKRG+YAI+GYPHKLG LL+GPPGTGKTSLIKALAC+T RHIIQVPLGR+ TN+DLM IM D+SF VA Q LP+ LKHENVI+VFEDVD ASKIVKAR
Sbjct:   26 YKRYKLGDVKDFDSLFFPEKEKLLRVLENFEAKRGRYAIRGYPHKLGFLLHGPPGTGKTSLIKALACRTRRHIIQVPLGRIKTNEDLMKIMFDQSFRVATQALPVPLKHENVIYVFEDVDAASKIVKAR 154          
BLAST of mRNA_H-canaliculatus_F_contig13638.2929.1 vs. uniprot
Match: D7FQ72_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ72_ECTSI)

HSP 1 Score: 223 bits (568), Expect = 3.720e-67
Identity = 105/129 (81.40%), Postives = 117/129 (90.70%), Query Frame = 1
Query:   10 YRRYKLGDGKDFDSLFFPEKESLLKTLGNFEAKRGKYAIKGYPHKLGLLLYGPPGTGKTSLIKALACQTGRHIIQVPLGRVNTNQDLMNIMLDESFPVAKQDLPISLKHENVIFVFEDVDTASKIVKAR 396
            Y+RYKLGD KDFDSLFFPEKE LL+ L NFEAKRG+YAI+GYPHKLG LL+GPPGTGKTSLIKALAC+TGRHIIQVPLGR+ TN+DLMNIM D+SF VA Q+LP+ LKHENVI+VFEDVD ASKIVK R
Sbjct:  261 YKRYKLGDVKDFDSLFFPEKEQLLRALENFEAKRGRYAIRGYPHKLGFLLHGPPGTGKTSLIKALACRTGRHIIQVPLGRIKTNEDLMNIMFDQSFRVATQELPVPLKHENVIYVFEDVDAASKIVKTR 389          
BLAST of mRNA_H-canaliculatus_F_contig13638.2929.1 vs. uniprot
Match: D8LH94_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH94_ECTSI)

HSP 1 Score: 197 bits (500), Expect = 1.440e-56
Identity = 90/132 (68.18%), Postives = 112/132 (84.85%), Query Frame = 1
Query:    1 AHRYRRYKLGDGKDFDSLFFPEKESLLKTLGNFEAKRGKYAIKGYPHKLGLLLYGPPGTGKTSLIKALACQTGRHIIQVPLGRVNTNQDLMNIMLDESFPVAKQDLPISLKHENVIFVFEDVDTASKIVKAR 396
              +Y+RY+L DGKDFDSLFFPEK++LL+ L +FE K GKYAIKGYPHKLGLLL+GPPGTGKTS+IKALAC TGR+++ VPLGR+ TNQ+LM+I+ D+ F V  ++LP++L  ENVIFV EDVD AS IVK+R
Sbjct:  247 VRKYKRYRLSDGKDFDSLFFPEKDALLRILQHFEDKSGKYAIKGYPHKLGLLLHGPPGTGKTSMIKALACHTGRNVVNVPLGRIKTNQELMDIVFDQRFAVVGEELPVTLGFENVIFVMEDVDAASPIVKSR 378          
BLAST of mRNA_H-canaliculatus_F_contig13638.2929.1 vs. uniprot
Match: A0A812US84_SYMMI (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812US84_SYMMI)

HSP 1 Score: 173 bits (438), Expect = 2.680e-50
Identity = 81/131 (61.83%), Postives = 104/131 (79.39%), Query Frame = 1
Query:   10 YRRYKLGDGKDFDSLFFPEKESLLKTLGNFEAKRGKYAIKGYPHKLGLLLYGPPGTGKTSLIKALACQTGRHIIQVPLGRVNTNQDLMNIMLDESFPVAKQDLPISLKHENVIFVFEDVDTASKIVKARSG 402
            Y+RYKL D K F  LFF EK+ LLK L +F+ K GKYAI+G+PHKLGLLL+GPPGTGKTSLIKA+A  TGR+++ +PL R+ TNQ+LM+I+ D+SF V  +D+PI L  +++IFV EDVD AS IV +RSG
Sbjct:  205 YKRYKLSDEKSFACLFFREKQMLLKLLSHFKDKSGKYAIQGFPHKLGLLLHGPPGTGKTSLIKAMAQHTGRNVVSIPLARIETNQELMDIVFDQSFAVKGEDMPIKLSFKDIIFVMEDVDAASPIVHSRSG 335          
BLAST of mRNA_H-canaliculatus_F_contig13638.2929.1 vs. uniprot
Match: A0A7S2HPD5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HPD5_9STRA)

HSP 1 Score: 175 bits (444), Expect = 9.400e-50
Identity = 86/131 (65.65%), Postives = 102/131 (77.86%), Query Frame = 1
Query:   10 YRRYKLGDGKDFDSLFFPEKESLLKTLGNFEAKRGKYAIKGYPHKLGLLLYGPPGTGKTSLIKALACQTGRHIIQVPLGRVNTNQDLMNIMLDESFPVAKQDLPISLKHENVIFVFEDVDTASKIVKARSG 402
            Y+RYKL D K F SLFF EK+SL+  LG+F+ K GKYAIKGYPHKLGLLL+GPPGTGKTSLIKALA  T R II VPL R+ TNQ+LM+IM D+ + V   ++PI L  ++VIFV EDVD ASKIV+ R G
Sbjct:  257 YKRYKLSDEKCFQSLFFDEKDSLINVLGHFQKKTGKYAIKGYPHKLGLLLHGPPGTGKTSLIKALAQHTQRSIINVPLARIGTNQELMDIMFDQQYAVQGDEVPIKLGFKDVIFVMEDVDAASKIVQRRDG 387          
BLAST of mRNA_H-canaliculatus_F_contig13638.2929.1 vs. uniprot
Match: A0A7S2RQC3_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RQC3_9STRA)

HSP 1 Score: 176 bits (445), Expect = 1.980e-49
Identity = 84/129 (65.12%), Postives = 101/129 (78.29%), Query Frame = 1
Query:   13 RRYKLGDGKDFDSLFFPEKESLLKTLGNFEAKRGKYAIKGYPHKLGLLLYGPPGTGKTSLIKALACQTGRHIIQVPLGRVNTNQDLMNIMLDESFPVAKQDLPISLKHENVIFVFEDVDTASKIVKARS 399
            RRYKL   K FDSLFFPEK+ +LK L NF+ K GKY I GYPHKLG+LL+GPPGTGKTSLIKALA  T R+I+ VPL R+ TNQ+LM+IM +  F VA +D+PI LK ++VIFV EDVD ASK+V  R+
Sbjct:  293 RRYKLSFRKKFDSLFFPEKQMILKVLDNFQTKTGKYGIPGYPHKLGMLLHGPPGTGKTSLIKALAAHTNRNIVSVPLARIKTNQELMDIMFELKFQVADEDIPIKLKFKDVIFVMEDVDCASKVVHRRT 421          
BLAST of mRNA_H-canaliculatus_F_contig13638.2929.1 vs. uniprot
Match: A0A7S1U3S3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3S3_9STRA)

HSP 1 Score: 170 bits (431), Expect = 1.220e-48
Identity = 78/130 (60.00%), Postives = 104/130 (80.00%), Query Frame = 1
Query:    7 RYRRYKLGDGKDFDSLFFPEKESLLKTLGNFEAKRGKYAIKGYPHKLGLLLYGPPGTGKTSLIKALACQTGRHIIQVPLGRVNTNQDLMNIMLDESFPVAKQDLPISLKHENVIFVFEDVDTASKIVKAR 396
            +Y+RYKL + K F++LFFPEK+ LLK L +F+AK GKY I+GYPHKLGLLL+GPPGTGKTSLIKA+A  T R+I+ + L R+ TNQ+LM+I+ D++F V  +D+PI L  +++IFV ED+D AS IVK R
Sbjct:  281 KYKRYKLSEEKTFNALFFPEKDQLLKLLEHFQAKTGKYEIEGYPHKLGLLLHGPPGTGKTSLIKAMAIHTRRNIVSINLSRIKTNQELMDIVFDQTFSVGGEDMPIKLSFKDIIFVMEDIDAASDIVKRR 410          
BLAST of mRNA_H-canaliculatus_F_contig13638.2929.1 vs. uniprot
Match: A0A8J5Y1R3_DIALT (AAA domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5Y1R3_DIALT)

HSP 1 Score: 173 bits (439), Expect = 4.510e-48
Identity = 81/131 (61.83%), Postives = 103/131 (78.63%), Query Frame = 1
Query:   10 YRRYKLGDGKDFDSLFFPEKESLLKTLGNFEAKRGKYAIKGYPHKLGLLLYGPPGTGKTSLIKALACQTGRHIIQVPLGRVNTNQDLMNIMLDESFPVAKQDLPISLKHENVIFVFEDVDTASKIVKARSG 402
            Y+RY+L D K FDSLFF +KE+LL  L NF  K G+YAI GYPHKLGLLL+GPPGTGKTSLIKALA  T R I+ VPL R++TNQ+LM+++ D+ + V  +D+PI LK ++V++VFEDVD ASK+V  R G
Sbjct:  279 YKRYRLSDEKTFDSLFFAQKETLLHILANFAKKSGRYAISGYPHKLGLLLHGPPGTGKTSLIKALAHHTQRSIVNVPLSRISTNQELMDVVFDQRYSVKGEDVPIRLKFKDVVYVFEDVDAASKVVHRRDG 409          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13638.2929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K8D9_9PHAE8.420e-7288.46AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
D7FQ71_ECTSI8.510e-7081.40AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K675_9PHAE2.030e-6880.62ATPase_AAA_core domain-containing protein n=1 Tax=... [more]
D7FQ72_ECTSI3.720e-6781.40AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LH94_ECTSI1.440e-5668.18AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A812US84_SYMMI2.680e-5061.83Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A7S2HPD5_9STRA9.400e-5065.65Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2RQC3_9STRA1.980e-4965.12Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7S1U3S3_9STRA1.220e-4860.00Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A8J5Y1R3_DIALT4.510e-4861.83AAA domain-containing protein n=2 Tax=Diacronema l... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13638contigH-canaliculatus_F_contig13638:655..1504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score241.9
Seed ortholog evalue1.7e-61
Seed eggNOG ortholog2880.D7FQ69
KEGG rclassRC00037,RC00041
KEGG koko:K00679,ko:K08900
KEGG ReactionR05333
KEGG Pathwayko00561,map00561
EggNOG free text desc.respiratory chain complex III assembly
EggNOG OGsCOG0465@1,KOG0743@2759
EC2.3.1.158
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03029
Hectar predicted targeting categoryother localisation
Exons2
Model size402
Cds size402
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929105.6504612-CDS-H-canaliculatus_F_contig13638:654..7921622929105.6504612-CDS-H-canaliculatus_F_contig13638:654..792Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13638 655..792 -
1696845680.9870095-CDS-H-canaliculatus_F_contig13638:654..7921696845680.9870095-CDS-H-canaliculatus_F_contig13638:654..792Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13638 655..792 -
1622929105.664167-CDS-H-canaliculatus_F_contig13638:1240..15041622929105.664167-CDS-H-canaliculatus_F_contig13638:1240..1504Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13638 1241..1504 -
1696845681.0068872-CDS-H-canaliculatus_F_contig13638:1240..15041696845681.0068872-CDS-H-canaliculatus_F_contig13638:1240..1504Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13638 1241..1504 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13638.2929.1prot_H-canaliculatus_F_contig13638.2929.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13638 655..1504 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13638.2929.1

>prot_H-canaliculatus_F_contig13638.2929.1 ID=prot_H-canaliculatus_F_contig13638.2929.1|Name=mRNA_H-canaliculatus_F_contig13638.2929.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=134bp
AHRYRRYKLGDGKDFDSLFFPEKESLLKTLGNFEAKRGKYAIKGYPHKLG
LLLYGPPGTGKTSLIKALACQTGRHIIQVPLGRVNTNQDLMNIMLDESFP
VAKQDLPISLKHENVIFVFEDVDTASKIVKARSG
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mRNA from alignment at H-canaliculatus_F_contig13638:655..1504-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13638.2929.1 ID=mRNA_H-canaliculatus_F_contig13638.2929.1|Name=mRNA_H-canaliculatus_F_contig13638.2929.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=850bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13638:655..1504- (Hapterophycus canaliculatus Oshoro5f female)
GCGCACAGGTACAGGCGCTACAAGCTGGGCGACGGAAAGGACTTCGACTC GCTCTTCTTCCCGGAGAAGGAGAGCCTGCTCAAAACTCTGGGCAACTTCG AGGCCAAGAGGGGCAAGTACGCCATCAAGGGCTACCCGCACAAGCTCGGG CTGCTGCTCTACGGCCCCCCTGGCACGGGAAAGACGAGCCTGATCAAGGC GCTGGCGTGCCAGACAGGGCGGCACATCATTCAGGTCCCCCTCGGACGGG TGAACACCAACCAGGTGGGCTGGGGTCAGCGTTTGGAGCGCGGAGGTTGA AGGGGGAGCGGGGGCTGAGTCGGGGGGGGGGGTGAGAGGGGGAGATACGG GTGTGGGCATGTGTGGGAGACTGTGCGAGACGATGCATCGCAACTGGGAT ATGATGTGGATCTTTTGGGGGGCTTTGCGGGCGAAGGGGACGCGAACTTC CGTGTTCCCTTCGTTCTGAGCTACCGAAGCTGCTACACGGAGAACCGAAA GGTGGCATGTGTGAGATTTCTCTATTTCTGCTCCTCCTCTTCCTCGCAGG GTAATCGCGTGCGCTTCATGTGGGAGAATATGCGCCCGACAGTCTGAACC ATAAACAACGGCAGCACCGACAGCACTTGCAGCACCAACAGCAAGTCCGA CGGGACCATAAAAAACAACTCGCCCAAAATAAACGAACGCTCAAACGGAC GGACGAACACAGGACCTGATGAACATCATGCTCGACGAATCGTTCCCCGT GGCCAAGCAAGATCTACCCATCTCCCTCAAGCACGAGAACGTAATCTTCG TCTTCGAGGACGTGGACACGGCCTCGAAGATCGTCAAGGCCAGGAGCGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13638:655..1504-

>mRNA_H-canaliculatus_F_contig13638.2929.1 ID=mRNA_H-canaliculatus_F_contig13638.2929.1|Name=mRNA_H-canaliculatus_F_contig13638.2929.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=804bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13638:655..1504- (Hapterophycus canaliculatus Oshoro5f female)
GCGCACAGGTACAGGCGCTACAAGCTGGGCGACGGAAAGGACTTCGACTC
GCTCTTCTTCCCGGAGAAGGAGAGCCTGCTCAAAACTCTGGGCAACTTCG
AGGCCAAGAGGGGCAAGTACGCCATCAAGGGCTACCCGCACAAGCTCGGG
CTGCTGCTCTACGGCCCCCCTGGCACGGGAAAGACGAGCCTGATCAAGGC
GCTGGCGTGCCAGACAGGGCGGCACATCATTCAGGTCCCCCTCGGACGGG
TGAACACCAACCAGGCGCACAGGTACAGGCGCTACAAGCTGGGCGACGGA
AAGGACTTCGACTCGCTCTTCTTCCCGGAGAAGGAGAGCCTGCTCAAAAC
TCTGGGCAACTTCGAGGCCAAGAGGGGCAAGTACGCCATCAAGGGCTACC
CGCACAAGCTCGGGCTGCTGCTCTACGGCCCCCCTGGCACGGGAAAGACG
AGCCTGATCAAGGCGCTGGCGTGCCAGACAGGGCGGCACATCATTCAGGT
CCCCCTCGGACGGGTGAACACCAACCAGGACCTGATGAACATCATGCTCG
ACGAATCGTTCCCCGTGGCCAAGCAAGATCTACCCATCTCCCTCAAGCAC
GAGAACGTAATCTTCGTCTTCGAGGACGTGGACACGGCCTCGAAGATCGT
CAAGGCCAGGAGCGGCGACCTGATGAACATCATGCTCGACGAATCGTTCC
CCGTGGCCAAGCAAGATCTACCCATCTCCCTCAAGCACGAGAACGTAATC
TTCGTCTTCGAGGACGTGGACACGGCCTCGAAGATCGTCAAGGCCAGGAG
CGGC
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