mRNA_H-canaliculatus_F_contig13630.2925.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13630.2925.1
Unique NamemRNA_H-canaliculatus_F_contig13630.2925.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13630.2925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13630contigH-canaliculatus_F_contig13630:1185..1850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size666
Cds size495
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13630.2925.1prot_H-canaliculatus_F_contig13630.2925.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13630 1194..1688 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929105.3413308-UTR-H-canaliculatus_F_contig13630:1184..11931622929105.3413308-UTR-H-canaliculatus_F_contig13630:1184..1193Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13630 1185..1193 +
1696845680.8797357-UTR-H-canaliculatus_F_contig13630:1184..11931696845680.8797357-UTR-H-canaliculatus_F_contig13630:1184..1193Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13630 1185..1193 +
1622929105.3783915-UTR-H-canaliculatus_F_contig13630:1688..18501622929105.3783915-UTR-H-canaliculatus_F_contig13630:1688..1850Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13630 1689..1850 +
1696845680.9018786-UTR-H-canaliculatus_F_contig13630:1688..18501696845680.9018786-UTR-H-canaliculatus_F_contig13630:1688..1850Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13630 1689..1850 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929105.3611848-CDS-H-canaliculatus_F_contig13630:1193..16881622929105.3611848-CDS-H-canaliculatus_F_contig13630:1193..1688Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13630 1194..1688 +
1696845680.891972-CDS-H-canaliculatus_F_contig13630:1193..16881696845680.891972-CDS-H-canaliculatus_F_contig13630:1193..1688Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13630 1194..1688 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13630.2925.1

>prot_H-canaliculatus_F_contig13630.2925.1 ID=prot_H-canaliculatus_F_contig13630.2925.1|Name=mRNA_H-canaliculatus_F_contig13630.2925.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=165bp
MVPKRSTEDVDRLVLQRIAGQAVLAAPRSITACAATSLFRGASMPCQRTR
RDLHAPTGRDQIVSTPKYRCLFSTERRCWLSTPPWSAPATMLGAPRYHWY
KIERLSGSLRFASLPAGVCHERSLAAQAIACVPSLLSPTVAVRCFHLQAA
SGFGRSVGASCLCR*
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mRNA from alignment at H-canaliculatus_F_contig13630:1185..1850+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13630.2925.1 ID=mRNA_H-canaliculatus_F_contig13630.2925.1|Name=mRNA_H-canaliculatus_F_contig13630.2925.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=666bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13630:1185..1850+ (Hapterophycus canaliculatus Oshoro5f female)
TGCAGGTAGATGGTTCCAAAAAGAAGCACCGAAGACGTTGATCGGTTGGT
GCTCCAACGAATTGCAGGGCAAGCTGTGTTGGCAGCACCGCGCTCGATAA
CAGCTTGCGCTGCTACGAGTTTATTTCGGGGGGCCTCCATGCCCTGTCAA
CGGACCCGTCGTGACCTTCACGCACCAACCGGGAGAGATCAGATTGTTTC
AACACCGAAATATCGGTGTTTGTTTTCGACGGAGAGAAGGTGCTGGCTCA
GTACGCCACCCTGGTCTGCGCCAGCAACCATGCTTGGAGCACCGCGCTAT
CATTGGTATAAAATAGAGAGGTTGAGTGGCTCTCTTCGATTTGCATCGTT
GCCGGCGGGGGTATGCCACGAGCGCAGTCTTGCCGCACAGGCCATCGCGT
GCGTCCCGTCTCTCCTCTCTCCCACCGTAGCTGTACGGTGCTTCCATCTC
CAAGCCGCGAGTGGCTTCGGAAGGTCCGTTGGCGCTTCCTGCCTGTGCCG
CTAGAAAGCAACGAAAGCCGCAGGTGTCGCTCATCACCGACCCCCCCTCT
CCCCCCTTCAGCCCTCGTCTCTCGGCCCATTTTCGTCACGGTACCACGAG
GGAGGAAGAATCGCAGCGAAAGTATTAAACCAAGCGCCGCCCGCCTCGTA
ACTCGAACCACGTCCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13630:1185..1850+

>mRNA_H-canaliculatus_F_contig13630.2925.1 ID=mRNA_H-canaliculatus_F_contig13630.2925.1|Name=mRNA_H-canaliculatus_F_contig13630.2925.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=990bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13630:1185..1850+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGTTCCAAAAAGAAGCACCGAAGACGTTGATCGGTTGGTGCTCCAACG
AATTGCAGGGCAAGCTGTGTTGGCAGCACCGCGCTCGATAACAGCTTGCG
CTGCTACGAGTTTATTTCGGGGGGCCTCCATGCCCTGTCAACGGACCCGT
CGTGACCTTCACGCACCAACCGGGAGAGATCAGATTGTTTCAACACCGAA
ATATCGGTGTTTGTTTTCGACGGAGAGAAGGTGCTGGCTCAGTACGCCAC
CCTGGTCTGCGCCAGCAACCATGCTTGGAGCACCGCGCTATCATTGGTAT
AAAATAGAGAGGTTGAGTGGCTCTCTTCGATTTGCATCGTTGCCGGCGGG
GGTATGCCACGAGCGCAGTCTTGCCGCACAGGCCATCGCGTGCGTCCCGT
CTCTCCTCTCTCCCACCGTAGCTGTACGGTGCTTCCATCTCCAAGCCGCG
AGTGGCTTCGGAAGGTCCGTTGGCGCTTCCTGCCTGTGCCGCTAGATGGT
TCCAAAAAGAAGCACCGAAGACGTTGATCGGTTGGTGCTCCAACGAATTG
CAGGGCAAGCTGTGTTGGCAGCACCGCGCTCGATAACAGCTTGCGCTGCT
ACGAGTTTATTTCGGGGGGCCTCCATGCCCTGTCAACGGACCCGTCGTGA
CCTTCACGCACCAACCGGGAGAGATCAGATTGTTTCAACACCGAAATATC
GGTGTTTGTTTTCGACGGAGAGAAGGTGCTGGCTCAGTACGCCACCCTGG
TCTGCGCCAGCAACCATGCTTGGAGCACCGCGCTATCATTGGTATAAAAT
AGAGAGGTTGAGTGGCTCTCTTCGATTTGCATCGTTGCCGGCGGGGGTAT
GCCACGAGCGCAGTCTTGCCGCACAGGCCATCGCGTGCGTCCCGTCTCTC
CTCTCTCCCACCGTAGCTGTACGGTGCTTCCATCTCCAAGCCGCGAGTGG
CTTCGGAAGGTCCGTTGGCGCTTCCTGCCTGTGCCGCTAG
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