mRNA_H-canaliculatus_F_contig1363.2924.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1363.2924.1
Unique NamemRNA_H-canaliculatus_F_contig1363.2924.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1363.2924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1363contigH-canaliculatus_F_contig1363:15426..19525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-12_000680.1
Exons4
Model size1845
Cds size1845
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1363.2924.1prot_H-canaliculatus_F_contig1363.2924.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1363 15426..19525 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929105.2346022-CDS-H-canaliculatus_F_contig1363:15425..156851622929105.2346022-CDS-H-canaliculatus_F_contig1363:15425..15685Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1363 15426..15685 +
1696845680.8428237-CDS-H-canaliculatus_F_contig1363:15425..156851696845680.8428237-CDS-H-canaliculatus_F_contig1363:15425..15685Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1363 15426..15685 +
1622929105.262113-CDS-H-canaliculatus_F_contig1363:16428..165191622929105.262113-CDS-H-canaliculatus_F_contig1363:16428..16519Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1363 16429..16519 +
1696845680.8516839-CDS-H-canaliculatus_F_contig1363:16428..165191696845680.8516839-CDS-H-canaliculatus_F_contig1363:16428..16519Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1363 16429..16519 +
1622929105.2794747-CDS-H-canaliculatus_F_contig1363:17796..178471622929105.2794747-CDS-H-canaliculatus_F_contig1363:17796..17847Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1363 17797..17847 +
1696845680.8604574-CDS-H-canaliculatus_F_contig1363:17796..178471696845680.8604574-CDS-H-canaliculatus_F_contig1363:17796..17847Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1363 17797..17847 +
1622929105.2936528-CDS-H-canaliculatus_F_contig1363:18082..195251622929105.2936528-CDS-H-canaliculatus_F_contig1363:18082..19525Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1363 18083..19525 +
1696845680.8689947-CDS-H-canaliculatus_F_contig1363:18082..195251696845680.8689947-CDS-H-canaliculatus_F_contig1363:18082..19525Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1363 18083..19525 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1363.2924.1

>prot_H-canaliculatus_F_contig1363.2924.1 ID=prot_H-canaliculatus_F_contig1363.2924.1|Name=mRNA_H-canaliculatus_F_contig1363.2924.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=615bp
MHSFRRGNQSWEVQRLQQNHRDKMGSMTSRTNYRPTQRQHQQHQRRGTGI
RRASARAQLAEIDVKRKNVFLVEKMVHIHRIGGFQRRFLHEFQDCKAALQ
FGKTNVGVSRAVHEHRRKKQELLRSENARLFTRLASPARSGIDFKKFEAD
FAQSRKYHQLAQCDRTVGYTSVYSSPVKADCPAGNPTIARQKEHQPTDGR
RLIRQRPASAGRGSDTPPTPCGSNNLKRNDGTEAHHDVHVGVNRESTDAT
SSVAPSRPHKSGRDGCRSTTDRPQTALGLRRSSNHGDLFDARAADPGWGS
VGASAARCRPPSAPERMEWGRWSADIGHSTARRRGDPPSFRNLSGGKGCI
VGGTRRSRRPAARAHRGRRTFFVRKSRDDEEGTPAASTEGGGPAGLQGYK
SGGGRDGEEPYFLGQTLLAEANVVIFGVDTTATERKKNDARGRTRTQVAL
RLSSLDGLVRESDGVRKTLRGFVVEAVPLTEEGKHPARSCGGRTGSTAFA
VPTVQEYLENKTGPATGGDELKLPSAALAPFREAHPLDDRGNYPEINALL
GPSGRRGLFQALLGSCRVVVPGDPGGKIGVQPLRIEGGDGLSVSFTDAAS
QRISARPRPPSRTC*
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mRNA from alignment at H-canaliculatus_F_contig1363:15426..19525+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1363.2924.1 ID=mRNA_H-canaliculatus_F_contig1363.2924.1|Name=mRNA_H-canaliculatus_F_contig1363.2924.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4100bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1363:15426..19525+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCATAGTTTTAGGAGGGGGAACCAATCGTGGGAAGTGCAGCGCCTTCA
ACAGAACCATCGAGACAAAATGGGCTCCATGACTTCACGGACCAACTACA
GACCAACCCAACGGCAGCATCAACAGCACCAGCGCCGTGGTACAGGAATA
CGCAGAGCAAGTGCCCGGGCACAGCTTGCGGAAATAGATGTCAAGCGCAA
GAACGTTTTCCTGGTCGAGAAAATGGTTCATATCCACCGCATTGGAGGCT
TTCAGAGGAGGTACGAGACATGCATTGTACATTAGTACATCCAGGTGTAG
GGTCATCAAATTGAAAATTGCAAGAAATATCAAGGCTGGCATGTTGCAAG
ACATTTCTTTCTCTTGCTCATAGCATACGAGAATGCAAGTGGGACGCCCA
CGCTACACAAGTACAAGCCTTCTGTGGCCGACAGCTGTTGATGAAGATGT
CCTTGTCCCGTCCAATATGATACTGAACTCTCACAATCAAGAATTCGACA
ACACAACCCCCCTGGGTCGCCTCTTTGTCTCGAGGTGTCGCTGAATCTCT
CCCTTGAAACAAATGTCATCAATCATATGTTTGAAAGAGAATGCCATCTT
CATTCTCGGACGCGTAGCCCTATTTCCAGCGAGCGCTGGTCTAATGGCGT
TCTGGCGATAACGCACAATTTCAAGTCAAGCATCTGAATGAAGATGGTGC
AGAAGGAATTGGTGCGTCAGTGGGGAGGAAGTGTCCGCTCGTGGTCGCTT
TCTTACGCTTGCTTCTTCAGGCCATGTATGTAAACTCCAAGACAGAACAT
CTCGTAAACGCGACCCTTCTGGCGTGCTCATGGAGTAGACCGTTGCACCG
TTGTTCGAGCCCATATGCTACAGAACTGCCTGCCTCCTTGAATCACCGGC
ACGGCGAAACCGCACAAAAAGTTCAAAATACGACCATCTCCTAGAGTTAG
TCAGCCTCTTAAGTATTGTGTCTTGGTATTGCCACTACTATCGTAACCTG
CAGGTTTCTACACGAATTCCAAGATTGCAAGGCGGCATTGCAGTTCGGGA
AAACAAACGTAGGCGTCTCACGGGCGGTTCACGAACACAGGCGAGTACAG
ACACATCGCTTGCGGATGGGTTATGCCGCCGGCTTTTCTCAAAGAAAGGG
AATTAGAGGGATAAGTCACCCCACTTTTTAGCAAAACTTTTAAAAAATGT
TCAAAGGTCACGTGAAACGCCCAAAACCCGCGAAACGCGCCGACATCGGT
ACGACACAATCGCATCCCATACGAAGAATGTTAACGCGTGGTCCAAGAAC
TTCGGGCGGAGTTCGGTCTTACAGGCGCAGTTGCGCACCAGAGTCCACAA
GAGTATTAGTTTCTTGCTCTGTAGCCTGGGAGGAACCCTGCGTCCGCTTT
GCCTGTTTATGCCGATCAATTTCATCTTTGGTTCGACAGTGCTAACCTTT
TTGAACTCCTCCAAGATGACTAGGCAGATTTATGACTACGCTACTGATTT
ACGACTGCAATAGTTTGTAGCGCCGTCATAAATCTACCTACTCTATATCC
CCCAAAAGAACGACCCCTAGGTGGGCCTGCATCATGTTTGCCCTCACCTA
CCCCAAGGGACGCACGGAAAATCATCGTTTTTGCCCGTCCTTCTCTTCTT
CGAAGTACCTCTCTTGAATTCAGTGCCATTTGCGTTGTATTGATTACCGT
TTCGGCGGACCCAAAAGTAGGTGAGAAGGATGATTCGTACGCAGCGTCCA
GGTTGGCACAAATAGCTTCCTGACGAACCATTTTCGTAGTCGCTCGTAGA
ATAGGCCTTTGAAGAATGTGGTGGCTTTCACCCGAAACGTTTATCGTTGG
TTCACGAAACGACAGAAGCACATCAGGGCATTCGATGTTCTCGTATCTGT
TCAGGTCGATAGGAGGTGACGTGAAAAATCTGTTTGAGGGCTCCGAAAGT
GGTCACAGGGAGGGAGCAATTTCTTTCAAAAGTGTACAATATGGGATGCG
AACATGAGATGAATTACGTGTGGGAGAAAGGACGTACCCCCTAGGGTACC
GTGCATAGAGGGGTTCTCTGGTAAGTCTTCTGGTGCCCTGCGATACAAGG
GGGTGCTGAACCCGGACCAGAAATCGGTTCCACCTTAGTTAGCACGCGAT
CCTACACGTCTGTAGTCGATACGTTAGAATCGTGCGAAGTGGTTTTGCTC
AAACGCTCGATGCCAAAGACGGATTTTATTTCACGATATTGGGCCAATAG
AGAGCGATTGTAGTTTATTTTTCATCGGGGTTCAACTGGCCCTTATCTGG
TTGAAGGTTGCAAATATCGAAATCGTGGCAATCAATCGGATCCTGCGAAT
CGCAGGTTCGTTTTAAGGAAGAAGAAGCAAGAGCTCCTTCGAAGCGAGAA
CGCCAGGCTGTTCACGCGGCTGGTGAGGGTACCGTTGCACACCGCAGACT
TTGGAGAGGAGTTATCTATGTCCGTCGTTCAAAGCGAACCTGTTTTTGTA
CAGAGGTAGTCGGTGAAGCTCGAATTACTGCATGTATGTCATTTTTGTCC
ACTCGACGAAGTCATGAGGAAGTTTTGGGACCAACAGTTAAGGCTGATAT
CGTTGCTAACGTGATCCCATCCCCTTTCAATCCTGTGATCTCGTGACCAC
CTCAAAGGCAAGCCCCGCACGCAGCGGTATAGACTTCAAAAAGTTCGAGG
CCGACTTCGCACAGAGCCGCAAGTACCATCAATTGGCGCAGTGTGACCGC
ACAGTGGGGTACACGTCAGTATATTCGTCCCCTGTCAAGGCTGACTGCCC
CGCAGGCAATCCAACAATAGCCCGCCAAAAGGAGCACCAGCCTACTGACG
GACGCCGCTTGATACGTCAACGCCCCGCATCCGCGGGGAGGGGCTCAGAT
ACCCCGCCAACACCTTGTGGAAGCAACAACCTCAAACGGAACGACGGCAC
TGAGGCCCACCATGATGTTCACGTCGGGGTAAACAGAGAGAGCACCGACG
CAACATCAAGTGTGGCTCCGTCCAGGCCGCACAAGTCCGGTAGAGATGGG
TGTCGATCGACAACGGATCGACCTCAAACGGCTCTGGGGTTGCGACGGAG
CAGCAACCATGGCGACCTCTTCGACGCTCGGGCCGCGGATCCCGGGTGGG
GAAGCGTGGGTGCTAGCGCAGCACGGTGCCGCCCCCCGTCCGCTCCGGAA
AGGATGGAGTGGGGAAGATGGTCAGCGGATATTGGCCACTCTACTGCTCG
CAGGCGAGGGGACCCGCCATCTTTCAGAAATCTTTCCGGTGGTAAGGGCT
GCATTGTGGGAGGAACTCGTCGATCGAGGAGGCCCGCCGCAAGAGCTCAC
AGAGGGAGGCGAACTTTTTTCGTCAGGAAATCAAGGGATGATGAAGAAGG
AACACCAGCGGCGTCAACGGAGGGGGGGGGTCCAGCTGGACTCCAAGGCT
ACAAAAGCGGAGGCGGGCGTGATGGTGAAGAGCCTTATTTCCTCGGGCAG
ACCCTGCTCGCCGAAGCAAACGTCGTCATCTTCGGCGTCGACACGACCGC
CACCGAAAGAAAGAAGAACGACGCTCGGGGACGGACCCGCACGCAGGTGG
CCCTCAGACTCTCGAGCCTGGATGGGTTAGTCAGGGAAAGCGACGGCGTT
CGAAAAACCCTGCGAGGTTTCGTGGTCGAGGCTGTGCCGCTCACGGAGGA
GGGCAAGCACCCGGCGAGGAGCTGTGGCGGGCGAACAGGGTCCACTGCTT
TTGCCGTGCCGACCGTCCAAGAATATTTGGAGAACAAGACAGGGCCAGCT
ACAGGAGGCGATGAATTGAAGTTACCGTCAGCTGCCCTTGCCCCGTTCCG
CGAGGCACACCCTCTAGACGATCGAGGAAATTACCCCGAAATTAACGCGC
TGCTCGGACCATCGGGCCGGCGCGGACTCTTCCAAGCCCTGCTCGGGAGC
TGCCGTGTCGTCGTTCCGGGCGACCCCGGCGGAAAGATCGGCGTGCAGCC
TCTCAGGATAGAAGGCGGCGACGGATTGTCGGTATCTTTCACCGACGCGG
CGTCCCAGAGAATCTCGGCACGCCCCCGTCCCCCGTCCCGAACATGCTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1363:15426..19525+

>mRNA_H-canaliculatus_F_contig1363.2924.1 ID=mRNA_H-canaliculatus_F_contig1363.2924.1|Name=mRNA_H-canaliculatus_F_contig1363.2924.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3690bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1363:15426..19525+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCATAGTTTTAGGAGGGGGAACCAATCGTGGGAAGTGCAGCGCCTTCA
ACAGAACCATCGAGACAAAATGGGCTCCATGACTTCACGGACCAACTACA
GACCAACCCAACGGCAGCATCAACAGCACCAGCGCCGTGGTACAGGAATA
CGCAGAGCAAGTGCCCGGGCACAGCTTGCGGAAATAGATGTCAAGCGCAA
GAACGTTTTCCTGGTCGAGAAAATGGTTCATATCCACCGCATTGGAGGCT
TTCAGAGGAGATGCATAGTTTTAGGAGGGGGAACCAATCGTGGGAAGTGC
AGCGCCTTCAACAGAACCATCGAGACAAAATGGGCTCCATGACTTCACGG
ACCAACTACAGACCAACCCAACGGCAGCATCAACAGCACCAGCGCCGTGG
TACAGGAATACGCAGAGCAAGTGCCCGGGCACAGCTTGCGGAAATAGATG
TCAAGCGCAAGAACGTTTTCCTGGTCGAGAAAATGGTTCATATCCACCGC
ATTGGAGGCTTTCAGAGGAGGTTTCTACACGAATTCCAAGATTGCAAGGC
GGCATTGCAGTTCGGGAAAACAAACGTAGGCGTCTCACGGGCGGTTCACG
AACACAGGCGAGTTTCTACACGAATTCCAAGATTGCAAGGCGGCATTGCA
GTTCGGGAAAACAAACGTAGGCGTCTCACGGGCGGTTCACGAACACAGGC
GAAAGAAGCAAGAGCTCCTTCGAAGCGAGAACGCCAGGCTGTTCACGCGG
CTGAAGAAGCAAGAGCTCCTTCGAAGCGAGAACGCCAGGCTGTTCACGCG
GCTGGCAAGCCCCGCACGCAGCGGTATAGACTTCAAAAAGTTCGAGGCCG
ACTTCGCACAGAGCCGCAAGTACCATCAATTGGCGCAGTGTGACCGCACA
GTGGGGTACACGTCAGTATATTCGTCCCCTGTCAAGGCTGACTGCCCCGC
AGGCAATCCAACAATAGCCCGCCAAAAGGAGCACCAGCCTACTGACGGAC
GCCGCTTGATACGTCAACGCCCCGCATCCGCGGGGAGGGGCTCAGATACC
CCGCCAACACCTTGTGGAAGCAACAACCTCAAACGGAACGACGGCACTGA
GGCCCACCATGATGTTCACGTCGGGGTAAACAGAGAGAGCACCGACGCAA
CATCAAGTGTGGCTCCGTCCAGGCCGCACAAGTCCGGTAGAGATGGGTGT
CGATCGACAACGGATCGACCTCAAACGGCTCTGGGGTTGCGACGGAGCAG
CAACCATGGCGACCTCTTCGACGCTCGGGCCGCGGATCCCGGGTGGGGAA
GCGTGGGTGCTAGCGCAGCACGGTGCCGCCCCCCGTCCGCTCCGGAAAGG
ATGGAGTGGGGAAGATGGTCAGCGGATATTGGCCACTCTACTGCTCGCAG
GCGAGGGGACCCGCCATCTTTCAGAAATCTTTCCGGTGGTAAGGGCTGCA
TTGTGGGAGGAACTCGTCGATCGAGGAGGCCCGCCGCAAGAGCTCACAGA
GGGAGGCGAACTTTTTTCGTCAGGAAATCAAGGGATGATGAAGAAGGAAC
ACCAGCGGCGTCAACGGAGGGGGGGGGTCCAGCTGGACTCCAAGGCTACA
AAAGCGGAGGCGGGCGTGATGGTGAAGAGCCTTATTTCCTCGGGCAGACC
CTGCTCGCCGAAGCAAACGTCGTCATCTTCGGCGTCGACACGACCGCCAC
CGAAAGAAAGAAGAACGACGCTCGGGGACGGACCCGCACGCAGGTGGCCC
TCAGACTCTCGAGCCTGGATGGGTTAGTCAGGGAAAGCGACGGCGTTCGA
AAAACCCTGCGAGGTTTCGTGGTCGAGGCTGTGCCGCTCACGGAGGAGGG
CAAGCACCCGGCGAGGAGCTGTGGCGGGCGAACAGGGTCCACTGCTTTTG
CCGTGCCGACCGTCCAAGAATATTTGGAGAACAAGACAGGGCCAGCTACA
GGAGGCGATGAATTGAAGTTACCGTCAGCTGCCCTTGCCCCGTTCCGCGA
GGCACACCCTCTAGACGATCGAGGAAATTACCCCGAAATTAACGCGCTGC
TCGGACCATCGGGCCGGCGCGGACTCTTCCAAGCCCTGCTCGGGAGCTGC
CGTGTCGTCGTTCCGGGCGACCCCGGCGGAAAGATCGGCGTGCAGCCTCT
CAGGATAGAAGGCGGCGACGGATTGTCGGTATCTTTCACCGACGCGGCGT
CCCAGAGAATCTCGGCACGCCCCCGTCCCCCGTCCCGAACATGCTAGGCA
AGCCCCGCACGCAGCGGTATAGACTTCAAAAAGTTCGAGGCCGACTTCGC
ACAGAGCCGCAAGTACCATCAATTGGCGCAGTGTGACCGCACAGTGGGGT
ACACGTCAGTATATTCGTCCCCTGTCAAGGCTGACTGCCCCGCAGGCAAT
CCAACAATAGCCCGCCAAAAGGAGCACCAGCCTACTGACGGACGCCGCTT
GATACGTCAACGCCCCGCATCCGCGGGGAGGGGCTCAGATACCCCGCCAA
CACCTTGTGGAAGCAACAACCTCAAACGGAACGACGGCACTGAGGCCCAC
CATGATGTTCACGTCGGGGTAAACAGAGAGAGCACCGACGCAACATCAAG
TGTGGCTCCGTCCAGGCCGCACAAGTCCGGTAGAGATGGGTGTCGATCGA
CAACGGATCGACCTCAAACGGCTCTGGGGTTGCGACGGAGCAGCAACCAT
GGCGACCTCTTCGACGCTCGGGCCGCGGATCCCGGGTGGGGAAGCGTGGG
TGCTAGCGCAGCACGGTGCCGCCCCCCGTCCGCTCCGGAAAGGATGGAGT
GGGGAAGATGGTCAGCGGATATTGGCCACTCTACTGCTCGCAGGCGAGGG
GACCCGCCATCTTTCAGAAATCTTTCCGGTGGTAAGGGCTGCATTGTGGG
AGGAACTCGTCGATCGAGGAGGCCCGCCGCAAGAGCTCACAGAGGGAGGC
GAACTTTTTTCGTCAGGAAATCAAGGGATGATGAAGAAGGAACACCAGCG
GCGTCAACGGAGGGGGGGGGTCCAGCTGGACTCCAAGGCTACAAAAGCGG
AGGCGGGCGTGATGGTGAAGAGCCTTATTTCCTCGGGCAGACCCTGCTCG
CCGAAGCAAACGTCGTCATCTTCGGCGTCGACACGACCGCCACCGAAAGA
AAGAAGAACGACGCTCGGGGACGGACCCGCACGCAGGTGGCCCTCAGACT
CTCGAGCCTGGATGGGTTAGTCAGGGAAAGCGACGGCGTTCGAAAAACCC
TGCGAGGTTTCGTGGTCGAGGCTGTGCCGCTCACGGAGGAGGGCAAGCAC
CCGGCGAGGAGCTGTGGCGGGCGAACAGGGTCCACTGCTTTTGCCGTGCC
GACCGTCCAAGAATATTTGGAGAACAAGACAGGGCCAGCTACAGGAGGCG
ATGAATTGAAGTTACCGTCAGCTGCCCTTGCCCCGTTCCGCGAGGCACAC
CCTCTAGACGATCGAGGAAATTACCCCGAAATTAACGCGCTGCTCGGACC
ATCGGGCCGGCGCGGACTCTTCCAAGCCCTGCTCGGGAGCTGCCGTGTCG
TCGTTCCGGGCGACCCCGGCGGAAAGATCGGCGTGCAGCCTCTCAGGATA
GAAGGCGGCGACGGATTGTCGGTATCTTTCACCGACGCGGCGTCCCAGAG
AATCTCGGCACGCCCCCGTCCCCCGTCCCGAACATGCTAG
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