mRNA_H-canaliculatus_F_contig1363.2922.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1363.2922.1
Unique NamemRNA_H-canaliculatus_F_contig1363.2922.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1363.2922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1363contigH-canaliculatus_F_contig1363:8768..11148 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size924
Cds size924
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1363.2922.1prot_H-canaliculatus_F_contig1363.2922.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1363 8768..11148 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929104.9824595-CDS-H-canaliculatus_F_contig1363:8767..89591622929104.9824595-CDS-H-canaliculatus_F_contig1363:8767..8959Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1363 8768..8959 +
1696845680.7398515-CDS-H-canaliculatus_F_contig1363:8767..89591696845680.7398515-CDS-H-canaliculatus_F_contig1363:8767..8959Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1363 8768..8959 +
1622929104.996162-CDS-H-canaliculatus_F_contig1363:9346..95431622929104.996162-CDS-H-canaliculatus_F_contig1363:9346..9543Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1363 9347..9543 +
1696845680.7502086-CDS-H-canaliculatus_F_contig1363:9346..95431696845680.7502086-CDS-H-canaliculatus_F_contig1363:9346..9543Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1363 9347..9543 +
1622929105.0080204-CDS-H-canaliculatus_F_contig1363:10099..102381622929105.0080204-CDS-H-canaliculatus_F_contig1363:10099..10238Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1363 10100..10238 +
1696845680.7604742-CDS-H-canaliculatus_F_contig1363:10099..102381696845680.7604742-CDS-H-canaliculatus_F_contig1363:10099..10238Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1363 10100..10238 +
1622929105.02399-CDS-H-canaliculatus_F_contig1363:10543..106961622929105.02399-CDS-H-canaliculatus_F_contig1363:10543..10696Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1363 10544..10696 +
1696845680.7691202-CDS-H-canaliculatus_F_contig1363:10543..106961696845680.7691202-CDS-H-canaliculatus_F_contig1363:10543..10696Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1363 10544..10696 +
1622929105.0418725-CDS-H-canaliculatus_F_contig1363:10905..111481622929105.0418725-CDS-H-canaliculatus_F_contig1363:10905..11148Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1363 10906..11148 +
1696845680.7781224-CDS-H-canaliculatus_F_contig1363:10905..111481696845680.7781224-CDS-H-canaliculatus_F_contig1363:10905..11148Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1363 10906..11148 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1363.2922.1

>prot_H-canaliculatus_F_contig1363.2922.1 ID=prot_H-canaliculatus_F_contig1363.2922.1|Name=mRNA_H-canaliculatus_F_contig1363.2922.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=308bp
MKQAFLNLQEFPGFTSVRPSLVRHVSTVVPYECHVFTEAKGQRLVVRRKE
IAFFSHRWDLPPDQCPPRPSLLDGPHPDTPDRAKLRHMKACLQEAPASIR
YVWIDMLCVPMGESRRRRAAGRTVPFFVQNSGSFYVLASDSAGLERHKKR
AWCRLEAFYAACPFQPCQVASAFSAKPAWNSKAARFVYDSTDCFVSTWEQ
GSRDETRIRNGDDLEAAGFLGDPVAGKMSDPSDRQIVAEAALGAIDAMEL
CGRMYPAIAKPLRLSCKRVLYGSQGWEGQGVDEEELLSLSSEKTGGGTRL
ASADGRFS
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mRNA from alignment at H-canaliculatus_F_contig1363:8768..11148+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1363.2922.1 ID=mRNA_H-canaliculatus_F_contig1363.2922.1|Name=mRNA_H-canaliculatus_F_contig1363.2922.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2381bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1363:8768..11148+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAAGCAGGCATTCCTCAACTTGCAAGAGTTTCCTGGCTTCACATCTGT
ACGCCCCAGCCTGGTCCGTCATGTATCTACCGTTGTTCCTTACGAGTGCC
ATGTCTTTACCGAAGCGAAGGGGCAGCGGCTTGTTGTCCGCAGGAAGGAA
ATAGCTTTTTTCTCCCATCGCTGGGACTTGCCGCCAGACCAGGTGTGCAT
ATAGTCTAGGGGATGTTGATCGAGGGGTAAACAGCTGCAGCACGATGCCG
AAATTTACCCTTCTTGTTACTTCGTAGTGCCGGACATGAAAGGTCAAGCG
TGCGAACTATGATTTTATGAACCTGTCGCCTTCGTGTCTCCACTGGATGA
AAATATGAAGAATTCCGAAGCGTGAGTGTGGCTAGGTGGAGGTGATCCCG
AGACCTAGGGCGCACCACGATGAACGGAAAGGACGCCGGGTGCATCGAGT
CGCTCAAACATATCCCCCGTCGATGAAAAATGCGCTGAACAAAACGCACA
TCTTTGGACCAAACGTGTCTAGGGAGCCCCCCCTGACGCTCGCCCACGAC
CGAAAGCTCCCAATGAAAACTCACGACAGTGTCCCCCAAGACCCAGCCTT
TTGGATGGGCCGCATCCGGATACGCCAGATCGAGCCAAGCTCCGGCATAT
GAAGGCGTGTCTGCAGGAAGCCCCGGCGAGCATACGGTATGTTTGGATCG
ACATGCTTTGCGTGCCCATGGGAGAATCCCGACGACGGAGAGCCGCCGGA
CGAACGGTTCCCTTCTTCGTTCAAAAGTGAGACAAAATGATGATTATTAA
TAGCTGCACAACGAGCGGGAAAACCCCTCAGCGTAGGACTGAGCTTAGGC
GGGAGATGGCACCATGAGCCAACGTACACGTCGGTGTCGCCGCCTGCAGC
GGAAGAGTGAGAGGAGGAGAGGCCCACGTGGGCCCTGTTGTGTTCAGAGT
CCGATCTGCCAGAATGTCAGAGAACAGCGAGAGGTTCTCAACTTGTGCGA
AACGAACGTGACACTGATTTGCGGTGCAGCCAGATGCTACCACAGAAGAT
CTCGCTCCGGAAACATCCTACTCCTTTCGCTTTCGTCCGAATGCCCCGTT
GCATTTTACAACGACGAAGAAAGCAATTGCATGAACATTCGACCTCGATC
GTCAGGTACCTTGCGACTTCTCCCAGAAGTAACGTTGACCGGATCAAGCA
TTGTTGGAGAGGAAAGCATTTGTGGCACGCAGTTATCTGATCCCGTCGAA
AAACAACCCTAACACCATCTGGTCGTCCACCATTTGCTCGGTCGGTATCG
TGAACGGGCGGGTGGGCGTGTGACGCACAAAGCTCTGGAAGTTTTTACGT
ATTGGCGTCGGACAGCGCCGGTCTCGAACGCCATAAAAAGCGCGCTTGGT
GCCGCCTCGAAGCTTTCTACGCCGCTTGCCCGTTCCAGCCCTGTCAAGTC
GCATCCGCCTTCTCCGCGAAGGTGAACTGTCCTAATGATTGGCTTCTTAA
CGAAAACGCTGAGTCAGCTCGTGCTGCACATCCTGCGGTTGCGTTGGTGC
AGAACTTGATGCAGGTGGAATGGCAATACGATGGCATGAAAATACACCTA
GTATGTGACTAGAGTGGGCGACGAAACCCGGCTCCGTCTAAACGTTTCTT
GTATACCCGAACATTCGACAAATAAGCCATCCGAAATTGCACCAGAAGCC
ATTTCCTGAGTATTTATTTATATATGTGTGACGCTGTCCGTAGACCATCA
TCGCCCTCCGCCATTCATCGAAGCAGCCAGCATGGAATTCCAAGGCAGCG
CGGTTTGTGTACGACTCCACGGATTGCTTCGTCAGTACTTGGGAACAAGG
GTCGAGAGACGAGACGCGGATAAGAAATGGAGATGATTTGGAGGCAGCAG
GGTTTCTTGGGGACCCGGTGGCGGGAAAGGTAAGCGCAGGGCGTGGCGCC
GTGCCTCGTGTCGTTAGAGGTGCCTCAACTTTCCTTTGCCTCTCGAGTCC
AGGACTTTTCTCTTTCAACAGAGACATCCTCATGTCTAGTGCCGACAGAA
AGGTTGGTCAAAGGGTATCGACGACCCATCCCGAATCCTTGTCCGATAAA
CAACTCTCCTGTGGTATCACATCGATCACGACAACCAGATGAGTGATCCG
TCGGACCGCCAGATCGTAGCAGAGGCCGCCTTGGGAGCGATCGACGCTAT
GGAGCTGTGTGGCAGAATGTACCCAGCCATCGCCAAGCCCTTGCGGCTGT
CCTGCAAGAGAGTCCTTTACGGTTCGCAAGGCTGGGAGGGACAAGGAGTA
GACGAAGAGGAGCTACTATCTCTTTCGTCGGAAAAAACCGGAGGGGGGAC
TCGTCTCGCCAGCGCCGACGGCCGCTTCAGT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1363:8768..11148+

>mRNA_H-canaliculatus_F_contig1363.2922.1 ID=mRNA_H-canaliculatus_F_contig1363.2922.1|Name=mRNA_H-canaliculatus_F_contig1363.2922.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1848bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1363:8768..11148+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAAGCAGGCATTCCTCAACTTGCAAGAGTTTCCTGGCTTCACATCTGT
ACGCCCCAGCCTGGTCCGTCATGTATCTACCGTTGTTCCTTACGAGTGCC
ATGTCTTTACCGAAGCGAAGGGGCAGCGGCTTGTTGTCCGCAGGAAGGAA
ATAGCTTTTTTCTCCCATCGCTGGGACTTGCCGCCAGACCAGATGAAGCA
GGCATTCCTCAACTTGCAAGAGTTTCCTGGCTTCACATCTGTACGCCCCA
GCCTGGTCCGTCATGTATCTACCGTTGTTCCTTACGAGTGCCATGTCTTT
ACCGAAGCGAAGGGGCAGCGGCTTGTTGTCCGCAGGAAGGAAATAGCTTT
TTTCTCCCATCGCTGGGACTTGCCGCCAGACCAGTGTCCCCCAAGACCCA
GCCTTTTGGATGGGCCGCATCCGGATACGCCAGATCGAGCCAAGCTCCGG
CATATGAAGGCGTGTCTGCAGGAAGCCCCGGCGAGCATACGGTATGTTTG
GATCGACATGCTTTGCGTGCCCATGGGAGAATCCCGACGACGGAGAGCCG
CCGGACGAACGGTTCCCTTCTTCGTTCAAAATGTCCCCCAAGACCCAGCC
TTTTGGATGGGCCGCATCCGGATACGCCAGATCGAGCCAAGCTCCGGCAT
ATGAAGGCGTGTCTGCAGGAAGCCCCGGCGAGCATACGGTATGTTTGGAT
CGACATGCTTTGCGTGCCCATGGGAGAATCCCGACGACGGAGAGCCGCCG
GACGAACGGTTCCCTTCTTCGTTCAAAACTCTGGAAGTTTTTACGTATTG
GCGTCGGACAGCGCCGGTCTCGAACGCCATAAAAAGCGCGCTTGGTGCCG
CCTCGAAGCTTTCTACGCCGCTTGCCCGTTCCAGCCCTGTCAAGTCGCAT
CCGCCTTCTCCGCGAAGCTCTGGAAGTTTTTACGTATTGGCGTCGGACAG
CGCCGGTCTCGAACGCCATAAAAAGCGCGCTTGGTGCCGCCTCGAAGCTT
TCTACGCCGCTTGCCCGTTCCAGCCCTGTCAAGTCGCATCCGCCTTCTCC
GCGAAGCCAGCATGGAATTCCAAGGCAGCGCGGTTTGTGTACGACTCCAC
GGATTGCTTCGTCAGTACTTGGGAACAAGGGTCGAGAGACGAGACGCGGA
TAAGAAATGGAGATGATTTGGAGGCAGCAGGGTTTCTTGGGGACCCGGTG
GCGGGAAAGCCAGCATGGAATTCCAAGGCAGCGCGGTTTGTGTACGACTC
CACGGATTGCTTCGTCAGTACTTGGGAACAAGGGTCGAGAGACGAGACGC
GGATAAGAAATGGAGATGATTTGGAGGCAGCAGGGTTTCTTGGGGACCCG
GTGGCGGGAAAGATGAGTGATCCGTCGGACCGCCAGATCGTAGCAGAGGC
CGCCTTGGGAGCGATCGACGCTATGGAGCTGTGTGGCAGAATGTACCCAG
CCATCGCCAAGCCCTTGCGGCTGTCCTGCAAGAGAGTCCTTTACGGTTCG
CAAGGCTGGGAGGGACAAGGAGTAGACGAAGAGGAGCTACTATCTCTTTC
GTCGGAAAAAACCGGAGGGGGGACTCGTCTCGCCAGCGCCGACGGCCGCT
TCAGTATGAGTGATCCGTCGGACCGCCAGATCGTAGCAGAGGCCGCCTTG
GGAGCGATCGACGCTATGGAGCTGTGTGGCAGAATGTACCCAGCCATCGC
CAAGCCCTTGCGGCTGTCCTGCAAGAGAGTCCTTTACGGTTCGCAAGGCT
GGGAGGGACAAGGAGTAGACGAAGAGGAGCTACTATCTCTTTCGTCGGAA
AAAACCGGAGGGGGGACTCGTCTCGCCAGCGCCGACGGCCGCTTCAGT
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