mRNA_H-canaliculatus_F_contig1362.2919.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1362.2919.1
Unique NamemRNA_H-canaliculatus_F_contig1362.2919.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1362.2919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1362contigH-canaliculatus_F_contig1362:25282..27090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_003350.1
Exons2
Model size737
Cds size735
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929104.6554446-CDS-H-canaliculatus_F_contig1362:25281..255021622929104.6554446-CDS-H-canaliculatus_F_contig1362:25281..25502Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1362 25282..25502 +
1696845680.5654578-CDS-H-canaliculatus_F_contig1362:25281..255021696845680.5654578-CDS-H-canaliculatus_F_contig1362:25281..25502Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1362 25282..25502 +
1622929104.6719072-CDS-H-canaliculatus_F_contig1362:26575..270891622929104.6719072-CDS-H-canaliculatus_F_contig1362:26575..27089Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1362 26576..27089 +
1696845680.5751176-CDS-H-canaliculatus_F_contig1362:26575..270891696845680.5751176-CDS-H-canaliculatus_F_contig1362:26575..27089Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1362 26576..27089 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1362.2919.1prot_H-canaliculatus_F_contig1362.2919.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1362 25282..27089 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1362.2919.1

>prot_H-canaliculatus_F_contig1362.2919.1 ID=prot_H-canaliculatus_F_contig1362.2919.1|Name=mRNA_H-canaliculatus_F_contig1362.2919.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=245bp
FGRVGGVIGHPAGGGSSTQSTTAEAHTMRRVRQTASTVANPIHRATSTRQ
PCQHSRVVGSPRAHRNLQLNRSTRHVGGLHERPHLLSKHGQQQRVRPLLH
LASQRGDAFGPKAQERGVTFAAMTTPSVRGDALCAGAWSQVAPADGRSAS
GRAAARAAGGGVGRANAGVLPAASLSGGGGRASSLAAPTNACAVGGRAAA
AVGVRARGVHTSAARCGKGDEGGDGDGMKPPAAAAATATPTKAGA
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mRNA from alignment at H-canaliculatus_F_contig1362:25282..27090+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1362.2919.1 ID=mRNA_H-canaliculatus_F_contig1362.2919.1|Name=mRNA_H-canaliculatus_F_contig1362.2919.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1809bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1362:25282..27090+ (Hapterophycus canaliculatus Oshoro5f female)
TTCGGGCGCGTTGGCGGTGTGATCGGGCATCCGGCCGGCGGGGGCAGCTC
AACCCAGAGTACGACCGCAGAGGCTCACACCATGAGGCGAGTAAGGCAAA
CAGCAAGCACTGTAGCGAATCCGATCCACCGGGCAACGTCGACGAGGCAA
CCATGTCAGCACAGCCGTGTTGTGGGATCACCGCGTGCGCACCGAAATCT
CCAACTCAATCGCTCCACAAGGTAGGTATTTGTGAGCCGCAGTTGGGAAG
AAGGATACGTTCTGATGACGAGACGAAAGCATTCAAACGAAAATGTGCCA
GGATATCGTGAGAGATGTGCATTTATTCAGTGCATGTTTTGCACTCCGTT
TCCGCAGCTCGGTCGAATATATTGCTTACCATCTTGGTGAAGCGGCGAGG
CCCCTTCGTCCCGCAGGCGGGCACTGGACCGCTGCGCTGTTTACGGCTGG
GTGAAGCAACAGCATACAACGAGTTGTCGTTGCAGATTGCGTGGACATCC
TCTGGTTGGCTTCGTTATCTCTTGATTGTCTCTTGCTTGTTTTGATCTGT
GGAATCACATTCCATCTCTCTGTGTCTCGCGTTTCACTCGAGATTTGAGT
CACACAGCAGTAGTCGCGCGCCCTTCATCGGAGACACGATCATAGGGCAC
GAACCCAAGCATGTTAATGCGTCTACCTCCAGCACTCATTAAGCAGCTCT
TAGCCGTGTCCAGCCGTGCGGCGCAGTTTGGAAGGTTGGTGCGATCGTTC
ATTCAGGCACGTGAGAAGCCTCAGGCAGCCATCGGTTACACTCGAGGGCA
ATCCCAGAAGTGCACAATCCAACATGTTCCGAAGAGTCGGCACTGAGTCT
AACCGCTGGGAGGATCGAGAGGTCATAAATTCTGGTTCACGCTGTACGAG
TAGAAGTGTTCCTTTAACCCTGCTGGTGTTTTGTTGCTGTACCAAGTCGT
AGGGTCGGGCTGTATCAATCTCGTTAGAAACCGAGCCACATCTTGTCTGT
CCTGCTCAGCGTTTTCGCAAGGACGTGCACCCTTCGCGCGTCATACATAA
CTGATTTGGACAAGGCGGGCGTTCGATTCAAAGAGTGGTGCCTCTCCAGC
GGTTGCGAGCCCCTTGCACACGAAGGAGCCCTCAGCGAACCCTGCGATAG
GCGCAACAATGGCTCATCTCGAGCCGTACAGTTTTCGCTAGCCGAAGGGC
CTGAGAGCGCTGTACCCCTCAACCTCGTTGGGCATACCTTTGATGCCCCT
CCCCCCGACCCCCCCCCCGACCCCCGACCCCTGCTGTTCAATAGGCATGT
CGGCGGCCTTCACGAGAGACCGCACCTCTTGTCCAAACATGGGCAACAGC
AAAGAGTGCGGCCCCTGCTGCACCTTGCGTCGCAGCGCGGCGACGCTTTC
GGACCCAAGGCGCAAGAGAGAGGCGTAACCTTCGCCGCGATGACGACACC
ATCCGTGCGAGGTGACGCCTTGTGCGCCGGCGCATGGTCTCAGGTAGCCC
CCGCCGACGGCAGGAGCGCATCGGGGAGAGCCGCCGCCAGGGCCGCAGGA
GGAGGCGTCGGCAGGGCCAACGCCGGTGTTCTCCCAGCGGCAAGCCTGAG
CGGCGGCGGGGGTAGGGCCTCGAGTTTGGCCGCACCGACGAATGCGTGCG
CTGTTGGGGGAAGGGCCGCCGCCGCCGTCGGAGTGCGGGCGCGCGGCGTG
CACACGAGCGCAGCACGGTGCGGGAAGGGCGACGAGGGCGGAGACGGAGA
CGGGATGAAACCCCCAGCGGCGGCGGCAGCAACAGCAACGCCTACCAAAG
CGGGAGCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1362:25282..27090+

>mRNA_H-canaliculatus_F_contig1362.2919.1 ID=mRNA_H-canaliculatus_F_contig1362.2919.1|Name=mRNA_H-canaliculatus_F_contig1362.2919.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1470bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1362:25282..27090+ (Hapterophycus canaliculatus Oshoro5f female)
TTCGGGCGCGTTGGCGGTGTGATCGGGCATCCGGCCGGCGGGGGCAGCTC
AACCCAGAGTACGACCGCAGAGGCTCACACCATGAGGCGAGTAAGGCAAA
CAGCAAGCACTGTAGCGAATCCGATCCACCGGGCAACGTCGACGAGGCAA
CCATGTCAGCACAGCCGTGTTGTGGGATCACCGCGTGCGCACCGAAATCT
CCAACTCAATCGCTCCACAAGTTCGGGCGCGTTGGCGGTGTGATCGGGCA
TCCGGCCGGCGGGGGCAGCTCAACCCAGAGTACGACCGCAGAGGCTCACA
CCATGAGGCGAGTAAGGCAAACAGCAAGCACTGTAGCGAATCCGATCCAC
CGGGCAACGTCGACGAGGCAACCATGTCAGCACAGCCGTGTTGTGGGATC
ACCGCGTGCGCACCGAAATCTCCAACTCAATCGCTCCACAAGGCATGTCG
GCGGCCTTCACGAGAGACCGCACCTCTTGTCCAAACATGGGCAACAGCAA
AGAGTGCGGCCCCTGCTGCACCTTGCGTCGCAGCGCGGCGACGCTTTCGG
ACCCAAGGCGCAAGAGAGAGGCGTAACCTTCGCCGCGATGACGACACCAT
CCGTGCGAGGTGACGCCTTGTGCGCCGGCGCATGGTCTCAGGTAGCCCCC
GCCGACGGCAGGAGCGCATCGGGGAGAGCCGCCGCCAGGGCCGCAGGAGG
AGGCGTCGGCAGGGCCAACGCCGGTGTTCTCCCAGCGGCAAGCCTGAGCG
GCGGCGGGGGTAGGGCCTCGAGTTTGGCCGCACCGACGAATGCGTGCGCT
GTTGGGGGAAGGGCCGCCGCCGCCGTCGGAGTGCGGGCGCGCGGCGTGCA
CACGAGCGCAGCACGGTGCGGGAAGGGCGACGAGGGCGGAGACGGAGACG
GGATGAAACCCCCAGCGGCGGCGGCAGCAACAGCAACGCCTACCAAAGCG
GGAGCAGCATGTCGGCGGCCTTCACGAGAGACCGCACCTCTTGTCCAAAC
ATGGGCAACAGCAAAGAGTGCGGCCCCTGCTGCACCTTGCGTCGCAGCGC
GGCGACGCTTTCGGACCCAAGGCGCAAGAGAGAGGCGTAACCTTCGCCGC
GATGACGACACCATCCGTGCGAGGTGACGCCTTGTGCGCCGGCGCATGGT
CTCAGGTAGCCCCCGCCGACGGCAGGAGCGCATCGGGGAGAGCCGCCGCC
AGGGCCGCAGGAGGAGGCGTCGGCAGGGCCAACGCCGGTGTTCTCCCAGC
GGCAAGCCTGAGCGGCGGCGGGGGTAGGGCCTCGAGTTTGGCCGCACCGA
CGAATGCGTGCGCTGTTGGGGGAAGGGCCGCCGCCGCCGTCGGAGTGCGG
GCGCGCGGCGTGCACACGAGCGCAGCACGGTGCGGGAAGGGCGACGAGGG
CGGAGACGGAGACGGGATGAAACCCCCAGCGGCGGCGGCAGCAACAGCAA
CGCCTACCAAAGCGGGAGCA
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