mRNA_H-canaliculatus_F_contig13618.2917.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13618.2917.1
Unique NamemRNA_H-canaliculatus_F_contig13618.2917.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13618.2917.1 vs. uniprot
Match: D7FNQ2_ECTSI (Guanylate-binding protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNQ2_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 7.770e-53
Identity = 102/190 (53.68%), Postives = 128/190 (67.37%), Query Frame = 1 
Query:    1 MKTRLLRGLFLVGACCA*GAGGVDDVGAPADTD-----PAACVSDMSGTLLRWQPVAVEG-----GXXXXXESSETELALDEDALEALAQVHGKIAVASISGPYRTGKSYFLNYVANQILARATDPPRDPGTFSFTRAFQTSPGIDSDGGSG-GGDCFFQLLPACANPLPDQPGTALLLLDTPGLMAPRR 537
            MKTRLLRG+ L G  C   +  VDDV    D       P++C +  SGTL +W+ V VE      G     ES+  EL +DE AL+AL+Q+  K+AV SI+GPYR+GKSYFLN++AN +LA   DPP++PG+F F R F TSP ++++GG G  G C FQL+PAC  PLPDQ GTALLLLDTPGLM PRR
Sbjct:    1 MKTRLLRGVLLAGIFCGWTSVAVDDVPTADDGQEQAGAPSSCAAPSSGTLFQWKRVPVEVAADGVGPEGGEESTRMELTVDEGALQALSQIDTKLAVVSIAGPYRSGKSYFLNFLANHVLANGFDPPKEPGSFDFERPFPTSPTLNAEGGGGEAGLCRFQLVPACGKPLPDQEGTALLLLDTPGLMTPRR 190
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BLAST of mRNA_H-canaliculatus_F_contig13618.2917.1 vs. uniprot
Match: A0A6H5L2D9_9PHAE (GBP domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2D9_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 1.520e-51
Identity = 101/193 (52.33%), Postives = 123/193 (63.73%), Query Frame = 1 
Query:    1 MKTRLLRGLFLVGACCA*GAGGVDDVGAPADTD-----PAACVSDMSGTLLRWQPVAVEG-----GXXXXXESSETELALDEDALEALAQVHGKIAVASISGPYRTGKSYFLNYVANQILARATDPPRDPGTFSFTRAFQTSPGIDSDGGSG----GGDCFFQLLPACANPLPDQPGTALLLLDTPGLMAPRR 537
            MKTRLLRG+ L G  C      VDDV    D       P++C +  SGTL +W  V +E      G     E +   L  DE ALEAL+Q+  K+AV SI+GPYR+GKSYFLN++AN +LA   DPP+DPG+F F R F TSP ++++GG       G C FQL+PACA PLPDQ GTALLLLDTPGLM PRR
Sbjct:    1 MKTRLLRGVLLAGIFCGWTTVAVDDVPTAHDGQEQAGAPSSCAASSSGTLFQWNRVPIEAAAEGVGPEGGKEGTRMALTADEGALEALSQIDSKLAVVSIAGPYRSGKSYFLNFLANHVLANGFDPPKDPGSFDFERMFPTSPTLNTEGGXXXXXEAGLCRFQLVPACAKPLPDQEGTALLLLDTPGLMTPRR 193
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13618.2917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNQ2_ECTSI7.770e-5353.68Guanylate-binding protein, putative n=1 Tax=Ectoca... [more]
A0A6H5L2D9_9PHAE1.520e-5152.33GBP domain-containing protein (Fragment) n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13618contigH-canaliculatus_F_contig13618:161..2614 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.8
Seed ortholog evalue7.3e-39
Seed eggNOG ortholog2880.D7FNQ2
KEGG koko:K20899
KEGG Pathwayko04621,map04621
EggNOG free text desc.GTPase activity
EggNOG OGsKOG2037@1,KOG2037@2759
Ec32 ortholog descriptionGuanylate-binding protein, N-terminal
Ec32 orthologEc-01_004670.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons3
Model size540
Cds size420
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13618.2917.1prot_H-canaliculatus_F_contig13618.2917.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13618 161..1298 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929104.1087894-CDS-H-canaliculatus_F_contig13618:160..4481622929104.1087894-CDS-H-canaliculatus_F_contig13618:160..448Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13618 161..448 -
1696845680.3524733-CDS-H-canaliculatus_F_contig13618:160..4481696845680.3524733-CDS-H-canaliculatus_F_contig13618:160..448Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13618 161..448 -
1622929104.1192033-CDS-H-canaliculatus_F_contig13618:1166..12981622929104.1192033-CDS-H-canaliculatus_F_contig13618:1166..1298Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13618 1167..1298 -
1696845680.3650815-CDS-H-canaliculatus_F_contig13618:1166..12981696845680.3650815-CDS-H-canaliculatus_F_contig13618:1166..1298Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13618 1167..1298 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929104.1300116-UTR-H-canaliculatus_F_contig13618:1298..13661622929104.1300116-UTR-H-canaliculatus_F_contig13618:1298..1366Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13618 1299..1366 -
1696845680.3773696-UTR-H-canaliculatus_F_contig13618:1298..13661696845680.3773696-UTR-H-canaliculatus_F_contig13618:1298..1366Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13618 1299..1366 -
1622929104.2402356-UTR-H-canaliculatus_F_contig13618:2562..26141622929104.2402356-UTR-H-canaliculatus_F_contig13618:2562..2614Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13618 2563..2614 -
1696845680.3876328-UTR-H-canaliculatus_F_contig13618:2562..26141696845680.3876328-UTR-H-canaliculatus_F_contig13618:2562..2614Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13618 2563..2614 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13618.2917.1

>prot_H-canaliculatus_F_contig13618.2917.1 ID=prot_H-canaliculatus_F_contig13618.2917.1|Name=mRNA_H-canaliculatus_F_contig13618.2917.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=140bp
MSGTLLRWQPVAVEGGGGGDDESSETELALDEDALEALAQVHGKIAVASI
SGPYRTGKSYFLNYVANQILARATDPPRDPGTFSFTRAFQTSPGIDSDGG
SGGGDCFFQLLPACANPLPDQPGTALLLLDTPGLMAPRR*
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mRNA from alignment at H-canaliculatus_F_contig13618:161..2614-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13618.2917.1 ID=mRNA_H-canaliculatus_F_contig13618.2917.1|Name=mRNA_H-canaliculatus_F_contig13618.2917.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2454bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13618:161..2614- (Hapterophycus canaliculatus Oshoro5f female)
ATGAAGACTCGCCTGCTGCGAGGCTTGTTCCTTGTCGGCGCCTGCTGCGC
TTGTCGAGTTGCTGGTTCGGATGATCCACCGGTGAGCTCCCCGCCAACAC
ACCAAGACGCCTTCTTGTCTCTTCTGTCTCTCTCATTCATCGGTTCGGGA
GCCCAAGAAATAATGATGGTCGTGCGTTTAGGTGTTGAGGGTTACAAGTT
TCTGTACACTTACAGTTGTTATTAGGATTTTGCCTTATGTGGATGGGACC
GTCGTCTCAAGCAAAAGCCGGAGCTAAGCGCGTTCCGTCAAATCCACGCG
TCTACATCGAGGTGCCCCTGGCTGTACATGATGGCTGCTGTTTACAAGTA
GAGTGTCGTAAACCCCTTCTACGCACTCATACTGTACAAGGGTGTTTCTC
TCCGCACCTGCTTGTGGCCAGCGTACAGACAGCAGCAACAGTAGATCGAC
AGGAGTCAGTATCGGGTTGAGCTTCCCTGCTGTGATAACCTTAGGCCGAC
GGTGTCGGGGTTGGCACCGGCCGATAGGCTGTGCATCCTTGCCAAAGTGT
TGACATGCTGGTTTATTCAGTAAACATGTCTGGCTTACAAGTACAAGTAC
GAGTATTGTATCCGCTGCGCTCTTTTTCCTGTACCAACGCTCGTCGCCTC
GTAGCTCGGTATACGCTCCTTGTACATGCGAGAGTGCGCTGTTTGCACCG
CGGTTTGGATCCTATGATGCCTGTTTCGACGATACTGCTGTTTGGCTGTG
TCCGCCGTTGACTCGCATTCAGGGGCGTCAAAACGCAAGCGTCTGGAAGG
ACCCGACCTCCCCTGAGAAGTCGGGGTAGAGCCCCTGTCTCGGATTCTTG
TAGAGTACTCCGTATCTTTTATCTTCTCGACAAGAGCATTGTCCGCCTGT
GTGCTGTGTTCGCTAGCCCTCGACGTCAGCTCTCATCTGCTGCGGCTACT
GCTGCGGCTGCCGCCAAACTTTCGTACTCCTTCGTCGAGGGCTGATTTTC
TGCCACTGCAGTAGTATCCAGAGGACTCCTGTCGTTCCCTGTTCTATCAT
ACGAGTATTTCGTCGCGTGCAACTCGCCAGGGATTACTACCGTCCCCCCG
TATGCTCGGCACGAGCAGCGCTTGATTCACTCCCGCCCAAACCTACAACT
TCCCCTGATCCTATGCGTCTTCCCGCTTGTTCCCTCCAAAACCGAGCCGC
AGGCCGGTGACAACGACGTGCCGGGGGCAGCAGCGGCGGAGAAGGGAGAA
GGAGCAGGAGGAGTCGACGACGTTGGAGCGCCAGCGGACACGGACCCCGC
TGCCTGCGTCTCGGATATGTCAGGAACCCTTCTCAGGTGGCAGCCAGTTG
CGGTGGAGGGAGGGGGAGGGGGCGATGACGAAAGCTCCGAGACGGAGCTA
GCCTTGGACGAGGACGCTCTTGAGGCACTGGCTCAGGTCCACGGCAAGGT
GTGCTTGATGTGCATGTAGTCTCTTCGCGCTGCGTTTTCGCAGGTCGAGG
AAGAGAGCCTGGGTAAGGCGAAGGAAGGCAGATCTGCATGGTGCTGGATT
TCTCTCGCCCCTGCGTTTGGAGTCGACCGCGACAAGAGGAAAAAAAAACA
AAAGAAAGCAAAAGAAAGCAAAAGAAAGCAGCCTACCTGTACAGCAGCAG
TCTATGCTCCCACTCGCGTATCGCACCCTCTTTTCTTCCCCTGCATGTGT
GGGTGGCCGGAAAGCGTAGAACGTTGCCTCGTCGCAACACACACCGCTCC
GCAGTGCGCCGCGACGCGTGGCGCGTGGTTCTTGAGCGGTGCCCAAGAGT
CCTCGCTGCGTCGCGTCCCCGTGTTCCTGGTGCGTGTTCGAACGTCGCAC
TCGAATGAGAAACAGACACAGAGCGAGGAAGCTCGTTTCACTCACCACCC
TAACCCGGCTGTTGTTTTTGTTTTTGTTGATGTTGTTGTCGATGTTGTTT
TTGTTGATGATCCAACTCGGCACTCGTCAAGCCAGCTCGTGGCCACACCC
ACCATGCACACCGTACGCGCCAGAGAAAAAAGAAGAAAGGTAAGTATACC
GCTGAAACCACCCCCTCCCTTTTCCATCATAACCCCCCGCCGACCCTCCC
CCATCCCGTCTCTTGCGCTGGGGTATCATACCATACCTGTCTCACGCACC
TCCCGCGCAAACGCAGATCGCCGTCGCCTCCATTTCCGGACCGTACCGCA
CGGGCAAGTCCTACTTCCTCAACTACGTCGCCAACCAAATCCTGGCTCGC
GCGACCGACCCGCCCAGAGATCCGGGAACTTTCTCGTTCACGCGGGCGTT
CCAAACGTCGCCAGGCATCGACAGCGACGGCGGTAGCGGCGGAGGAGACT
GCTTCTTCCAGCTGCTGCCGGCTTGCGCGAATCCTCTGCCCGATCAGCCA
GGAACGGCGCTGCTTCTGTTGGACACGCCGGGGCTGATGGCGCCGCGCAG
GTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13618:161..2614-

>mRNA_H-canaliculatus_F_contig13618.2917.1 ID=mRNA_H-canaliculatus_F_contig13618.2917.1|Name=mRNA_H-canaliculatus_F_contig13618.2917.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=840bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13618:161..2614- (Hapterophycus canaliculatus Oshoro5f female)
ATGTCAGGAACCCTTCTCAGGTGGCAGCCAGTTGCGGTGGAGGGAGGGGG
AGGGGGCGATGACGAAAGCTCCGAGACGGAGCTAGCCTTGGACGAGGACG
CTCTTGAGGCACTGGCTCAGGTCCACGGCAAGATGTCAGGAACCCTTCTC
AGGTGGCAGCCAGTTGCGGTGGAGGGAGGGGGAGGGGGCGATGACGAAAG
CTCCGAGACGGAGCTAGCCTTGGACGAGGACGCTCTTGAGGCACTGGCTC
AGGTCCACGGCAAGATCGCCGTCGCCTCCATTTCCGGACCGTACCGCACG
GGCAAGTCCTACTTCCTCAACTACGTCGCCAACCAAATCCTGGCTCGCGC
GACCGACCCGCCCAGAGATCCGGGAACTTTCTCGTTCACGCGGGCGTTCC
AAACGTCGCCAGGCATCGACAGCGACGGCGGTAGCGGCGGAGGAGACTGC
TTCTTCCAGCTGCTGCCGGCTTGCGCGAATCCTCTGCCCGATCAGCCAGG
AACGGCGCTGCTTCTGTTGGACACGCCGGGGCTGATGGCGCCGCGCAGGT
GAATCGCCGTCGCCTCCATTTCCGGACCGTACCGCACGGGCAAGTCCTAC
TTCCTCAACTACGTCGCCAACCAAATCCTGGCTCGCGCGACCGACCCGCC
CAGAGATCCGGGAACTTTCTCGTTCACGCGGGCGTTCCAAACGTCGCCAG
GCATCGACAGCGACGGCGGTAGCGGCGGAGGAGACTGCTTCTTCCAGCTG
CTGCCGGCTTGCGCGAATCCTCTGCCCGATCAGCCAGGAACGGCGCTGCT
TCTGTTGGACACGCCGGGGCTGATGGCGCCGCGCAGGTGA
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