mRNA_H-canaliculatus_F_contig13617.2916.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13617.2916.1
Unique NamemRNA_H-canaliculatus_F_contig13617.2916.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13617.2916.1 vs. uniprot
Match: D8LHL0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHL0_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 1.020e-28
Identity = 80/176 (45.45%), Postives = 98/176 (55.68%), Query Frame = 1 
Query:   34 EGFGPGVGALLRRSSSGAGRSLTVDTR---RXXXXXXXXXXXXXXXXXXXXSSWQTLXXXXXXXXXXRLVDGRASGA-NAIEMRVAGGQQSKGTYYSPRRRAIGQAFRPGELECECKFSRRLPLYHRLRAKKVLDTLAKYTLEGFRVRGRSGLYVCPDRVGNFFYMTLSEEGGREA 549
            +G GPG   LL ++S+ AG SLTVDTR   R                    SS   L          R+VDGRA+ + +             G    P+R  +GQAFR GEL+CECK+SRR PLYHRL+A+ VL TLA   L+G RV GRS LYVCPD++GNF YMTLSE   R+A
Sbjct: 1843 DGIGPGGEGLLSKASTWAGCSLTVDTRSVVRGVFRRENSLDAANKGSGSPCSSPTQLVLDGGGGESGRVVDGRATNSTHXXXXXXXXXXXXXGGLVLPQRE-LGQAFREGELQCECKYSRRFPLYHRLQAQMVLVTLATTALDGLRVHGRSDLYVCPDQLGNF-YMTLSESPRRDA 2016
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13617.2916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHL0_ECTSI1.020e-2845.45Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13617contigH-canaliculatus_F_contig13617:350..1715 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size559
Cds size555
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929104.0572712-CDS-H-canaliculatus_F_contig13617:351..3751622929104.0572712-CDS-H-canaliculatus_F_contig13617:351..375Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13617 352..375 -
1696845680.3229148-CDS-H-canaliculatus_F_contig13617:351..3751696845680.3229148-CDS-H-canaliculatus_F_contig13617:351..375Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13617 352..375 -
1622929104.0718427-CDS-H-canaliculatus_F_contig13617:1184..17151622929104.0718427-CDS-H-canaliculatus_F_contig13617:1184..1715Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13617 1185..1715 -
1696845680.3366246-CDS-H-canaliculatus_F_contig13617:1184..17151696845680.3366246-CDS-H-canaliculatus_F_contig13617:1184..1715Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13617 1185..1715 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13617.2916.1prot_H-canaliculatus_F_contig13617.2916.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13617 352..1715 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13617.2916.1

>prot_H-canaliculatus_F_contig13617.2916.1 ID=prot_H-canaliculatus_F_contig13617.2916.1|Name=mRNA_H-canaliculatus_F_contig13617.2916.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=185bp
RKLTSGESIGAEGFGPGVGALLRRSSSGAGRSLTVDTRRAGGGGAVLADS
RNGGNGASPSSWQTLATGGGGGGGGRLVDGRASGANAIEMRVAGGQQSKG
TYYSPRRRAIGQAFRPGELECECKFSRRLPLYHRLRAKKVLDTLAKYTLE
GFRVRGRSGLYVCPDRVGNFFYMTLSEEGGREAMR
back to top

mRNA from alignment at H-canaliculatus_F_contig13617:350..1715-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13617.2916.1 ID=mRNA_H-canaliculatus_F_contig13617.2916.1|Name=mRNA_H-canaliculatus_F_contig13617.2916.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1366bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13617:350..1715- (Hapterophycus canaliculatus Oshoro5f female)
AGGAAGTTGACCTCGGGGGAGTCGATAGGCGCGGAGGGCTTCGGGCCAGG
CGTCGGTGCCCTCTTGCGCAGATCCTCGTCCGGGGCGGGGCGATCTTTGA
CGGTCGATACCCGGCGTGCGGGTGGTGGTGGTGCCGTGCTGGCTGACAGC
CGGAACGGTGGCAACGGCGCCAGCCCTTCCTCTTGGCAGACACTAGCGAC
TGGCGGCGGCGGCGGCGGCGGCGGCAGGCTTGTTGACGGCCGCGCGAGTG
GCGCGAACGCCATCGAGATGAGGGTCGCTGGCGGGCAGCAGTCGAAGGGC
ACGTACTACTCTCCGCGGCGGCGGGCGATAGGCCAGGCCTTCCGACCGGG
GGAGCTCGAGTGCGAGTGCAAGTTCTCCAGGCGGTTACCCCTGTACCACC
GGCTGCGGGCGAAGAAGGTCCTCGACACCCTCGCCAAGTATACCCTGGAA
GGGTTCAGGGTCCGCGGGAGGAGCGGGCTGTACGTGTGCCCCGACCGTGT
CGGGAACTTTTTTTACATGACTCTCTCAGAGGTAAGGTCACCGCTGTCCC
TGAATTGACAACGTCGTGCATGCCGGCGCAAGCCGACTCCCACTCCCGCA
GCAAAGTAGCACCGTGTTCCTTACGGACGGAGCTGAAGGGCTTGCTTGTC
CTCCGGTCGGTGAAAGCTTTGGCTCGCTCCGTCCCATTCGTGTCGGAACG
CAGCGCCCGCATGGTCGAAGTTGAGACTGACGCGGGATGCATGGTGCCGG
CGCGGATGCCCCTCGAGTGTTCCCATCGGAACGGGTTGCTTGCCCCCGCA
GTCGCCAAGACGGAGTGGAGGTGGAACATCAAGCGCCATGTTATCTTTGT
TTGGGACAGTCAATGGGACGGTGGATATCTGGAGGGATATGTGTCAACCC
CGCGAGGAAGACGTCGATGCTTGATGCTGCAATGAGAGAGAGGACGAAAA
GTGGGTCCAGGAGGCTCAGGGGGGAGAGGGGGGCGACAGCAACAATGGTG
GACGTAGACCGCTCGAATCTTCGAGTAGCCCCGCCCCCCCCCCATCGCCC
AGTGACTCAGACGCAAAGGAGATCCATCGGAGCGTAAGTCGGAGCGTAAG
TGATGAACCCGCGACCCACGGATTGTCTCCCACCCTAGCACCGGCGATGT
CGTCGGCCACGGGTGCTGGATACCCCCCCCCCCGCGCATATTCGGGCGGG
CTCCGACCACCATCGCAGCTGTCGTTTCGGTTGGATTCTGAACGCGCCGA
GCTTAGACCGGTCCCCGGCTGGCGCTCCGCCTGCTTCGTACTCGCTCGGT
CGTGTGTGTTCGTGTGCGTCCTTGTGGTCTGTGTCCGCAGGAGGGCGGGA
GGGAGGCCATGCGCGG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13617:350..1715-

>mRNA_H-canaliculatus_F_contig13617.2916.1 ID=mRNA_H-canaliculatus_F_contig13617.2916.1|Name=mRNA_H-canaliculatus_F_contig13617.2916.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1110bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13617:350..1715- (Hapterophycus canaliculatus Oshoro5f female)
AGGAAGTTGACCTCGGGGGAGTCGATAGGCGCGGAGGGCTTCGGGCCAGG
CGTCGGTGCCCTCTTGCGCAGATCCTCGTCCGGGGCGGGGCGATCTTTGA
CGGTCGATACCCGGCGTGCGGGTGGTGGTGGTGCCGTGCTGGCTGACAGC
CGGAACGGTGGCAACGGCGCCAGCCCTTCCTCTTGGCAGACACTAGCGAC
TGGCGGCGGCGGCGGCGGCGGCGGCAGGCTTGTTGACGGCCGCGCGAGTG
GCGCGAACGCCATCGAGATGAGGGTCGCTGGCGGGCAGCAGTCGAAGGGC
ACGTACTACTCTCCGCGGCGGCGGGCGATAGGCCAGGCCTTCCGACCGGG
GGAGCTCGAGTGCGAGTGCAAGTTCTCCAGGCGGTTACCCCTGTACCACC
GGCTGCGGGCGAAGAAGGTCCTCGACACCCTCGCCAAGTATACCCTGGAA
GGGTTCAGGGTCCGCGGGAGGAGCGGGCTGTACGTGTGCCCCGACCGTGT
CGGGAACTTTTTTTACATGACTCTCTCAGAGAGGAAGTTGACCTCGGGGG
AGTCGATAGGCGCGGAGGGCTTCGGGCCAGGCGTCGGTGCCCTCTTGCGC
AGATCCTCGTCCGGGGCGGGGCGATCTTTGACGGTCGATACCCGGCGTGC
GGGTGGTGGTGGTGCCGTGCTGGCTGACAGCCGGAACGGTGGCAACGGCG
CCAGCCCTTCCTCTTGGCAGACACTAGCGACTGGCGGCGGCGGCGGCGGC
GGCGGCAGGCTTGTTGACGGCCGCGCGAGTGGCGCGAACGCCATCGAGAT
GAGGGTCGCTGGCGGGCAGCAGTCGAAGGGCACGTACTACTCTCCGCGGC
GGCGGGCGATAGGCCAGGCCTTCCGACCGGGGGAGCTCGAGTGCGAGTGC
AAGTTCTCCAGGCGGTTACCCCTGTACCACCGGCTGCGGGCGAAGAAGGT
CCTCGACACCCTCGCCAAGTATACCCTGGAAGGGTTCAGGGTCCGCGGGA
GGAGCGGGCTGTACGTGTGCCCCGACCGTGTCGGGAACTTTTTTTACATG
ACTCTCTCAGAGGAGGGCGGGAGGGAGGCCATGCGCGAGGGCGGGAGGGA
GGCCATGCGC
back to top