mRNA_H-canaliculatus_F_contig1361.2914.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1361.2914.1
Unique NamemRNA_H-canaliculatus_F_contig1361.2914.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1361.2914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1361contigH-canaliculatus_F_contig1361:24730..25249 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size520
Cds size420
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1361.2914.1prot_H-canaliculatus_F_contig1361.2914.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1361 24796..25215 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929103.3188758-UTR-H-canaliculatus_F_contig1361:24729..247951622929103.3188758-UTR-H-canaliculatus_F_contig1361:24729..24795Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1361 24730..24795 +
1696845679.9420443-UTR-H-canaliculatus_F_contig1361:24729..247951696845679.9420443-UTR-H-canaliculatus_F_contig1361:24729..24795Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1361 24730..24795 +
1622929103.3459036-UTR-H-canaliculatus_F_contig1361:25215..252491622929103.3459036-UTR-H-canaliculatus_F_contig1361:25215..25249Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1361 25216..25249 +
1696845679.9641242-UTR-H-canaliculatus_F_contig1361:25215..252491696845679.9641242-UTR-H-canaliculatus_F_contig1361:25215..25249Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1361 25216..25249 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929103.3318138-CDS-H-canaliculatus_F_contig1361:24795..252151622929103.3318138-CDS-H-canaliculatus_F_contig1361:24795..25215Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1361 24796..25215 +
1696845679.9537783-CDS-H-canaliculatus_F_contig1361:24795..252151696845679.9537783-CDS-H-canaliculatus_F_contig1361:24795..25215Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1361 24796..25215 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1361.2914.1

>prot_H-canaliculatus_F_contig1361.2914.1 ID=prot_H-canaliculatus_F_contig1361.2914.1|Name=mRNA_H-canaliculatus_F_contig1361.2914.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=140bp
MQATSKFGITPPLSIVPVLPRPGGSHRCSQAAAAQDERSRLRQEGPPLTA
TSLTGDVTLLRGEPVHARVEVEEVVVLPVRGRQRRRGAVDETNPAVSLST
PSAASPCVHQTPRGPRDKQHQNCCRVVFAGGRSGSRREE*
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mRNA from alignment at H-canaliculatus_F_contig1361:24730..25249+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1361.2914.1 ID=mRNA_H-canaliculatus_F_contig1361.2914.1|Name=mRNA_H-canaliculatus_F_contig1361.2914.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=520bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1361:24730..25249+ (Hapterophycus canaliculatus Oshoro5f female)
CTGCAAGACATTTTGCGTCTACGCAGCTATGTACAACGGGTTGTGCTCCG
CTTGTCTCCTTCGGGTATGCAGGCAACTTCGAAATTCGGAATTACACCGC
CGTTGTCGATCGTGCCAGTCTTGCCCCGACCGGGAGGTTCGCACCGTTGT
AGCCAAGCGGCTGCTGCGCAAGATGAAAGAAGCCGACTACGGCAGGAAGG
TCCACCGCTGACGGCCACGTCTCTTACCGGCGATGTCACGCTTTTGCGCG
GCGAACCAGTGCATGCACGTGTCGAGGTTGAGGAGGTGGTCGTTCTACCC
GTCCGTGGACGGCAGCGAAGACGGGGGGCTGTTGACGAAACGAACCCGGC
TGTTTCGCTCTCGACCCCCTCGGCGGCGTCTCCGTGCGTCCATCAGACAC
CCCGCGGCCCTCGGGATAAGCAGCATCAGAATTGCTGTCGCGTAGTGTTC
GCCGGCGGCAGAAGCGGCTCTCGACGCGAAGAGTGAAAACGATGCTGCCG
TCCCCCGGTAATCTGCCAAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1361:24730..25249+

>mRNA_H-canaliculatus_F_contig1361.2914.1 ID=mRNA_H-canaliculatus_F_contig1361.2914.1|Name=mRNA_H-canaliculatus_F_contig1361.2914.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=840bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1361:24730..25249+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCAGGCAACTTCGAAATTCGGAATTACACCGCCGTTGTCGATCGTGCC
AGTCTTGCCCCGACCGGGAGGTTCGCACCGTTGTAGCCAAGCGGCTGCTG
CGCAAGATGAAAGAAGCCGACTACGGCAGGAAGGTCCACCGCTGACGGCC
ACGTCTCTTACCGGCGATGTCACGCTTTTGCGCGGCGAACCAGTGCATGC
ACGTGTCGAGGTTGAGGAGGTGGTCGTTCTACCCGTCCGTGGACGGCAGC
GAAGACGGGGGGCTGTTGACGAAACGAACCCGGCTGTTTCGCTCTCGACC
CCCTCGGCGGCGTCTCCGTGCGTCCATCAGACACCCCGCGGCCCTCGGGA
TAAGCAGCATCAGAATTGCTGTCGCGTAGTGTTCGCCGGCGGCAGAAGCG
GCTCTCGACGCGAAGAGTGAATGCAGGCAACTTCGAAATTCGGAATTACA
CCGCCGTTGTCGATCGTGCCAGTCTTGCCCCGACCGGGAGGTTCGCACCG
TTGTAGCCAAGCGGCTGCTGCGCAAGATGAAAGAAGCCGACTACGGCAGG
AAGGTCCACCGCTGACGGCCACGTCTCTTACCGGCGATGTCACGCTTTTG
CGCGGCGAACCAGTGCATGCACGTGTCGAGGTTGAGGAGGTGGTCGTTCT
ACCCGTCCGTGGACGGCAGCGAAGACGGGGGGCTGTTGACGAAACGAACC
CGGCTGTTTCGCTCTCGACCCCCTCGGCGGCGTCTCCGTGCGTCCATCAG
ACACCCCGCGGCCCTCGGGATAAGCAGCATCAGAATTGCTGTCGCGTAGT
GTTCGCCGGCGGCAGAAGCGGCTCTCGACGCGAAGAGTGA
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