mRNA_H-canaliculatus_F_contig13605.2909.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13605.2909.1
Unique NamemRNA_H-canaliculatus_F_contig13605.2909.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13605.2909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13605contigH-canaliculatus_F_contig13605:479..982 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size496
Cds size492
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929103.084397-CDS-H-canaliculatus_F_contig13605:478..6091622929103.084397-CDS-H-canaliculatus_F_contig13605:478..609Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13605 479..609 +
1696845679.8630612-CDS-H-canaliculatus_F_contig13605:478..6091696845679.8630612-CDS-H-canaliculatus_F_contig13605:478..609Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13605 479..609 +
1622929103.1037714-CDS-H-canaliculatus_F_contig13605:619..9801622929103.1037714-CDS-H-canaliculatus_F_contig13605:619..980Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13605 620..980 +
1696845679.8731403-CDS-H-canaliculatus_F_contig13605:619..9801696845679.8731403-CDS-H-canaliculatus_F_contig13605:619..980Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13605 620..980 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13605.2909.1prot_H-canaliculatus_F_contig13605.2909.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13605 479..980 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13605.2909.1

>prot_H-canaliculatus_F_contig13605.2909.1 ID=prot_H-canaliculatus_F_contig13605.2909.1|Name=mRNA_H-canaliculatus_F_contig13605.2909.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=164bp
ETRLRILHFLSWFLRRRVGWMLALRGFLAECGGRRRQALQTGADSSSSSS
SSSSSGCAPLRGVESARLRTTDVSLSAACAKNAMCPCRLSVDAEGAGTLL
EFVVNSLRTLKRQPCRTTVGPHIPRSLAGAPVFLLLFTRSLCLSLCHRPR
ELLNTCGRGLPCWR
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mRNA from alignment at H-canaliculatus_F_contig13605:479..982+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13605.2909.1 ID=mRNA_H-canaliculatus_F_contig13605.2909.1|Name=mRNA_H-canaliculatus_F_contig13605.2909.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=504bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13605:479..982+ (Hapterophycus canaliculatus Oshoro5f female)
GAGACCCGGCTCCGTATCCTTCATTTTCTCTCGTGGTTTCTGCGGAGAAG
GGTGGGATGGATGCTTGCACTGCGGGGCTTCCTCGCCGAATGTGGAGGCA
GACGTAGACAGGCGCTTCAGACTGGTGCCGAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCGGCTGCGCCCCTCTCCGCGGCGTTG
AGTCGGCTCGTCTTCGGACCACGGATGTTTCTCTTTCGGCGGCGTGCGCG
AAGAACGCCATGTGCCCGTGTCGTTTGTCTGTCGATGCCGAAGGAGCAGG
AACCCTCCTCGAGTTCGTCGTCAACAGCCTGCGCACGCTGAAGCGGCAGC
CGTGCAGGACAACCGTGGGCCCGCACATACCCCGCTCTCTCGCTGGCGCG
CCCGTTTTTCTTCTCTTGTTCACTCGTTCTCTCTGCCTGTCACTGTGCCA
CCGCCCGCGTGAACTTTTGAACACCTGCGGCAGGGGATTGCCCTGCTGGA
GAAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13605:479..982+

>mRNA_H-canaliculatus_F_contig13605.2909.1 ID=mRNA_H-canaliculatus_F_contig13605.2909.1|Name=mRNA_H-canaliculatus_F_contig13605.2909.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=984bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13605:479..982+ (Hapterophycus canaliculatus Oshoro5f female)
GAGACCCGGCTCCGTATCCTTCATTTTCTCTCGTGGTTTCTGCGGAGAAG
GGTGGGATGGATGCTTGCACTGCGGGGCTTCCTCGCCGAATGTGGAGGCA
GACGTAGACAGGCGCTTCAGACTGGTGCCGAGAGACCCGGCTCCGTATCC
TTCATTTTCTCTCGTGGTTTCTGCGGAGAAGGGTGGGATGGATGCTTGCA
CTGCGGGGCTTCCTCGCCGAATGTGGAGGCAGACGTAGACAGGCGCTTCA
GACTGGTGCCGACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCT
GCGCCCCTCTCCGCGGCGTTGAGTCGGCTCGTCTTCGGACCACGGATGTT
TCTCTTTCGGCGGCGTGCGCGAAGAACGCCATGTGCCCGTGTCGTTTGTC
TGTCGATGCCGAAGGAGCAGGAACCCTCCTCGAGTTCGTCGTCAACAGCC
TGCGCACGCTGAAGCGGCAGCCGTGCAGGACAACCGTGGGCCCGCACATA
CCCCGCTCTCTCGCTGGCGCGCCCGTTTTTCTTCTCTTGTTCACTCGTTC
TCTCTGCCTGTCACTGTGCCACCGCCCGCGTGAACTTTTGAACACCTGCG
GCAGGGGATTGCCCTGCTGGAGACAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCGGCTGCGCCCCTCTCCGCGGCGTTGAGTCGGCTCGTCTTCGGA
CCACGGATGTTTCTCTTTCGGCGGCGTGCGCGAAGAACGCCATGTGCCCG
TGTCGTTTGTCTGTCGATGCCGAAGGAGCAGGAACCCTCCTCGAGTTCGT
CGTCAACAGCCTGCGCACGCTGAAGCGGCAGCCGTGCAGGACAACCGTGG
GCCCGCACATACCCCGCTCTCTCGCTGGCGCGCCCGTTTTTCTTCTCTTG
TTCACTCGTTCTCTCTGCCTGTCACTGTGCCACCGCCCGCGTGAACTTTT
GAACACCTGCGGCAGGGGATTGCCCTGCTGGAGA
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