mRNA_H-canaliculatus_F_contig13603.2907.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13603.2907.1
Unique NamemRNA_H-canaliculatus_F_contig13603.2907.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13603.2907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13603contigH-canaliculatus_F_contig13603:33..803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size772
Cds size564
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929102.9839742-UTR-H-canaliculatus_F_contig13603:32..2391622929102.9839742-UTR-H-canaliculatus_F_contig13603:32..239Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13603 33..239 +
1696845679.8315496-UTR-H-canaliculatus_F_contig13603:32..2391696845679.8315496-UTR-H-canaliculatus_F_contig13603:32..239Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13603 33..239 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929103.0037494-CDS-H-canaliculatus_F_contig13603:239..8031622929103.0037494-CDS-H-canaliculatus_F_contig13603:239..803Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13603 240..803 +
1696845679.8495913-CDS-H-canaliculatus_F_contig13603:239..8031696845679.8495913-CDS-H-canaliculatus_F_contig13603:239..803Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13603 240..803 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13603.2907.1prot_H-canaliculatus_F_contig13603.2907.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13603 240..803 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13603.2907.1

>prot_H-canaliculatus_F_contig13603.2907.1 ID=prot_H-canaliculatus_F_contig13603.2907.1|Name=mRNA_H-canaliculatus_F_contig13603.2907.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=188bp
MNEHSPAGHVPTAARPGRHETFSKLPITRRSKLCQNESYPAVPTTDQPAP
IPLPPPPHTSYPTARVAHRSTCSASLSFMAGSSAVDLRPSNSSGLALSSA
SHFSPTSAAHLATAFRPLVSAAVTFARQGAWCSSRTLRATRAASSTAAAS
AFSASAAAAGSTAAAGAAAPPPPPAAPPPTSSLVFSSP
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mRNA from alignment at H-canaliculatus_F_contig13603:33..803+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13603.2907.1 ID=mRNA_H-canaliculatus_F_contig13603.2907.1|Name=mRNA_H-canaliculatus_F_contig13603.2907.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=771bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13603:33..803+ (Hapterophycus canaliculatus Oshoro5f female)
GTCAATTTTGGACTTAGACCAGTTTGGTCGCATAGGGTCCATAATTTGAA
TCCGTGTGCCCTCTTGCCCCTCCCCGCCGGCCTGCGAAACGACAGCCGCA
AAGCAACACCACACACGGCCGTCAAACCCACCTCGCTCGTAAATCCCCTC
ACTGCCAACACGTGCTAACCTCTGTCCAACGGCACGTGCACATGAACACG
CGTACACATGAACGAACACTCACCAGCCGGACACGTGCCGACGGCTGCCA
GACCGGGTCGACACGAAACATTCTCCAAACTCCCGATCACGAGACGTTCC
AAGCTTTGCCAAAACGAAAGCTATCCTGCTGTGCCAACGACGGATCAGCC
GGCCCCCATCCCCCTCCCCCCCCCTCCGCACACGTCCTACCCAACGGCTA
GGGTCGCTCACCGTTCCACATGCTCCGCCTCCCTCTCCTTCATGGCCGGC
TCCAGCGCCGTCGACTTGCGCCCCTCCAACTCCTCCGGCCTCGCGCTCTC
CTCCGCGTCCCACTTTTCTCCCACGAGCGCGGCACACCTGGCCACCGCCT
TCCGCCCCTTGGTGTCAGCGGCGGTAACCTTCGCCAGGCAGGGCGCGTGG
TGCTCGTCCAGGACGCTCAGGGCCACCCGTGCTGCTTCTTCGACGGCGGC
CGCTTCGGCCTTCTCCGCTTCGGCGGCAGCGGCGGGGTCGACAGCGGCGG
CGGGAGCGGCGGCCCCTCCGCCGCCACCTGCCGCGCCGCCACCGACGTCC
TCGTTGGTCTTCTCGTCTCCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13603:33..803+

>mRNA_H-canaliculatus_F_contig13603.2907.1 ID=mRNA_H-canaliculatus_F_contig13603.2907.1|Name=mRNA_H-canaliculatus_F_contig13603.2907.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1128bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13603:33..803+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAACGAACACTCACCAGCCGGACACGTGCCGACGGCTGCCAGACCGGG
TCGACACGAAACATTCTCCAAACTCCCGATCACGAGACGTTCCAAGCTTT
GCCAAAACGAAAGCTATCCTGCTGTGCCAACGACGGATCAGCCGGCCCCC
ATCCCCCTCCCCCCCCCTCCGCACACGTCCTACCCAACGGCTAGGGTCGC
TCACCGTTCCACATGCTCCGCCTCCCTCTCCTTCATGGCCGGCTCCAGCG
CCGTCGACTTGCGCCCCTCCAACTCCTCCGGCCTCGCGCTCTCCTCCGCG
TCCCACTTTTCTCCCACGAGCGCGGCACACCTGGCCACCGCCTTCCGCCC
CTTGGTGTCAGCGGCGGTAACCTTCGCCAGGCAGGGCGCGTGGTGCTCGT
CCAGGACGCTCAGGGCCACCCGTGCTGCTTCTTCGACGGCGGCCGCTTCG
GCCTTCTCCGCTTCGGCGGCAGCGGCGGGGTCGACAGCGGCGGCGGGAGC
GGCGGCCCCTCCGCCGCCACCTGCCGCGCCGCCACCGACGTCCTCGTTGG
TCTTCTCGTCTCCGATGAACGAACACTCACCAGCCGGACACGTGCCGACG
GCTGCCAGACCGGGTCGACACGAAACATTCTCCAAACTCCCGATCACGAG
ACGTTCCAAGCTTTGCCAAAACGAAAGCTATCCTGCTGTGCCAACGACGG
ATCAGCCGGCCCCCATCCCCCTCCCCCCCCCTCCGCACACGTCCTACCCA
ACGGCTAGGGTCGCTCACCGTTCCACATGCTCCGCCTCCCTCTCCTTCAT
GGCCGGCTCCAGCGCCGTCGACTTGCGCCCCTCCAACTCCTCCGGCCTCG
CGCTCTCCTCCGCGTCCCACTTTTCTCCCACGAGCGCGGCACACCTGGCC
ACCGCCTTCCGCCCCTTGGTGTCAGCGGCGGTAACCTTCGCCAGGCAGGG
CGCGTGGTGCTCGTCCAGGACGCTCAGGGCCACCCGTGCTGCTTCTTCGA
CGGCGGCCGCTTCGGCCTTCTCCGCTTCGGCGGCAGCGGCGGGGTCGACA
GCGGCGGCGGGAGCGGCGGCCCCTCCGCCGCCACCTGCCGCGCCGCCACC
GACGTCCTCGTTGGTCTTCTCGTCTCCG
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