mRNA_H-canaliculatus_F_contig1360.2905.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1360.2905.1
Unique NamemRNA_H-canaliculatus_F_contig1360.2905.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1360.2905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1360contigH-canaliculatus_F_contig1360:23119..23657 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size539
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1360.2905.1prot_H-canaliculatus_F_contig1360.2905.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1360 23184..23492 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929102.4753504-UTR-H-canaliculatus_F_contig1360:23118..231831622929102.4753504-UTR-H-canaliculatus_F_contig1360:23118..23183Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1360 23119..23183 +
1696845679.5921369-UTR-H-canaliculatus_F_contig1360:23118..231831696845679.5921369-UTR-H-canaliculatus_F_contig1360:23118..23183Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1360 23119..23183 +
1622929102.5082338-UTR-H-canaliculatus_F_contig1360:23492..236571622929102.5082338-UTR-H-canaliculatus_F_contig1360:23492..23657Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1360 23493..23657 +
1696845679.6121519-UTR-H-canaliculatus_F_contig1360:23492..236571696845679.6121519-UTR-H-canaliculatus_F_contig1360:23492..23657Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1360 23493..23657 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929102.492645-CDS-H-canaliculatus_F_contig1360:23183..234921622929102.492645-CDS-H-canaliculatus_F_contig1360:23183..23492Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1360 23184..23492 +
1696845679.6020117-CDS-H-canaliculatus_F_contig1360:23183..234921696845679.6020117-CDS-H-canaliculatus_F_contig1360:23183..23492Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1360 23184..23492 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1360.2905.1

>prot_H-canaliculatus_F_contig1360.2905.1 ID=prot_H-canaliculatus_F_contig1360.2905.1|Name=mRNA_H-canaliculatus_F_contig1360.2905.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=103bp
MAILLPSFLTGKKGERGEYHVSPQGVAATGVTRPPRTRELEDDKGISYPR
HGMYAVDRYVVYEVHDEGRHASFTPPLPPLSSPRGCTRLEADIKLVDAEH
PR*
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mRNA from alignment at H-canaliculatus_F_contig1360:23119..23657+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1360.2905.1 ID=mRNA_H-canaliculatus_F_contig1360.2905.1|Name=mRNA_H-canaliculatus_F_contig1360.2905.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=539bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1360:23119..23657+ (Hapterophycus canaliculatus Oshoro5f female)
TTTATTCGACGATCCTTGACGATCCTCGTAAGGACACACCAAGCAGATGG
GATCCAGTGCAGGATATGGCGATACTACTGCCGTCTTTCCTCACAGGAAA
AAAGGGGGAAAGGGGGGAATATCACGTATCGCCGCAGGGGGTGGCAGCAA
CAGGGGTAACGCGTCCCCCGCGAACTCGCGAACTCGAGGACGACAAAGGA
ATCTCGTACCCGCGGCACGGTATGTACGCCGTCGATAGATATGTAGTCTA
CGAAGTACATGATGAGGGACGACACGCGAGTTTCACGCCTCCACTGCCGC
CGTTGTCCAGCCCCAGAGGGTGTACGAGACTCGAGGCTGACATCAAGCTC
GTTGATGCCGAACATCCACGGTAGGGTAAATCCGGATAGTAGGGCGGATC
GACCTGTGCTCGAGGAAGTGTGGATTCGGACTGCGCAACAGCCGGGGTAT
GAGAGAAGTCTACCCGGATATATTCCTCCATACTCTTCTGAACTCCACAC
TCTCTAGAAGGCGTGTCGTTGACGCTTTCGCATGCGGTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1360:23119..23657+

>mRNA_H-canaliculatus_F_contig1360.2905.1 ID=mRNA_H-canaliculatus_F_contig1360.2905.1|Name=mRNA_H-canaliculatus_F_contig1360.2905.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=618bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1360:23119..23657+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGATACTACTGCCGTCTTTCCTCACAGGAAAAAAGGGGGAAAGGGG
GGAATATCACGTATCGCCGCAGGGGGTGGCAGCAACAGGGGTAACGCGTC
CCCCGCGAACTCGCGAACTCGAGGACGACAAAGGAATCTCGTACCCGCGG
CACGGTATGTACGCCGTCGATAGATATGTAGTCTACGAAGTACATGATGA
GGGACGACACGCGAGTTTCACGCCTCCACTGCCGCCGTTGTCCAGCCCCA
GAGGGTGTACGAGACTCGAGGCTGACATCAAGCTCGTTGATGCCGAACAT
CCACGGTAGATGGCGATACTACTGCCGTCTTTCCTCACAGGAAAAAAGGG
GGAAAGGGGGGAATATCACGTATCGCCGCAGGGGGTGGCAGCAACAGGGG
TAACGCGTCCCCCGCGAACTCGCGAACTCGAGGACGACAAAGGAATCTCG
TACCCGCGGCACGGTATGTACGCCGTCGATAGATATGTAGTCTACGAAGT
ACATGATGAGGGACGACACGCGAGTTTCACGCCTCCACTGCCGCCGTTGT
CCAGCCCCAGAGGGTGTACGAGACTCGAGGCTGACATCAAGCTCGTTGAT
GCCGAACATCCACGGTAG
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