mRNA_H-canaliculatus_F_contig100.28.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig100.28.1
Unique NamemRNA_H-canaliculatus_F_contig100.28.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig100.28.1 vs. uniprot
Match: D7FQ37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ37_ECTSI)

HSP 1 Score: 310 bits (794), Expect = 4.010e-98
Identity = 155/166 (93.37%), Postives = 159/166 (95.78%), Query Frame = 1
Query: 1678 GYVTEAYDDFPDYVPNMGAWGESKPGNTPEAYPADSLDLEAFWNGGAEAVDFHDIPVVDRPCFVEMKQFIDNEGLTMLPSETELLERDIQNERRARAKARKERFADEPDEDLVDDTLDDVPLGDEIEVGVIDVPPPPVDFDDSDGYDDGYDLDEGGIQGAESEGMY 2175
            GYVTEAYDDFPDYVPNMGAWGESKPGNTPEAYPADSLDL+AFWNGGAEAVDFHDIPVVDRP FVEMKQFIDNEGLTMLPSETELLERDIQ ERRARAKARKERFADEPDEDLVDDTLDD+PL DEIEVGVIDVPPPPVDFDDSDGYDDGYD D G + GAES+GMY
Sbjct:    9 GYVTEAYDDFPDYVPNMGAWGESKPGNTPEAYPADSLDLDAFWNGGAEAVDFHDIPVVDRPVFVEMKQFIDNEGLTMLPSETELLERDIQTERRARAKARKERFADEPDEDLVDDTLDDLPLDDEIEVGVIDVPPPPVDFDDSDGYDDGYDPDTGDLGGAESDGMY 174          
BLAST of mRNA_H-canaliculatus_F_contig100.28.1 vs. uniprot
Match: A0A6H5JNX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNX0_9PHAE)

HSP 1 Score: 307 bits (787), Expect = 3.740e-96
Identity = 154/166 (92.77%), Postives = 159/166 (95.78%), Query Frame = 1
Query: 1678 GYVTEAYDDFPDYVPNMGAWGESKPGNTPEAYPADSLDLEAFWNGGAEAVDFHDIPVVDRPCFVEMKQFIDNEGLTMLPSETELLERDIQNERRARAKARKERFADEPDEDLVDDTLDDVPLGDEIEVGVIDVPPPPVDFDDSDGYDDGYDLDEGGIQGAESEGMY 2175
            GYVTEAYDDFPDYVPNMGAWGESKPG+TPEAYPADSLDL+ FWNGGAEAVDFHDIPVVDRP FVEMKQFIDNEGLTMLPSETELLERDIQNERRARAKARKERFADEPDEDLVDDTLDD+PL DEIEVGVIDVPPPPVDFDDSDGYDDGYD D GG+  AES+GMY
Sbjct:   71 GYVTEAYDDFPDYVPNMGAWGESKPGSTPEAYPADSLDLDDFWNGGAEAVDFHDIPVVDRPVFVEMKQFIDNEGLTMLPSETELLERDIQNERRARAKARKERFADEPDEDLVDDTLDDLPLDDEIEVGVIDVPPPPVDFDDSDGYDDGYDPDMGGLGEAESDGMY 236          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig100.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQ37_ECTSI4.010e-9893.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JNX0_9PHAE3.740e-9692.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig100contigH-canaliculatus_F_contig100:45100..49820 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_007610.1
Exons5
Model size2299
Cds size675
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928627.926292-UTR-H-canaliculatus_F_contig100:45099..452201622928627.926292-UTR-H-canaliculatus_F_contig100:45099..45220Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig100 45100..45220 -
1696845500.8794773-UTR-H-canaliculatus_F_contig100:45099..452201696845500.8794773-UTR-H-canaliculatus_F_contig100:45099..45220Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig100 45100..45220 -
1622928627.9944773-UTR-H-canaliculatus_F_contig100:48289..491941622928627.9944773-UTR-H-canaliculatus_F_contig100:48289..49194Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig100 48290..49194 -
1696845500.9337091-UTR-H-canaliculatus_F_contig100:48289..491941696845500.9337091-UTR-H-canaliculatus_F_contig100:48289..49194Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig100 48290..49194 -
1622928628.004518-UTR-H-canaliculatus_F_contig100:49222..498201622928628.004518-UTR-H-canaliculatus_F_contig100:49222..49820Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig100 49223..49820 -
1696845500.946179-UTR-H-canaliculatus_F_contig100:49222..498201696845500.946179-UTR-H-canaliculatus_F_contig100:49222..49820Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig100 49223..49820 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928627.9411407-CDS-H-canaliculatus_F_contig100:45220..453971622928627.9411407-CDS-H-canaliculatus_F_contig100:45220..45397Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig100 45221..45397 -
1696845500.891476-CDS-H-canaliculatus_F_contig100:45220..453971696845500.891476-CDS-H-canaliculatus_F_contig100:45220..45397Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig100 45221..45397 -
1622928627.9515204-CDS-H-canaliculatus_F_contig100:46288..463921622928627.9515204-CDS-H-canaliculatus_F_contig100:46288..46392Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig100 46289..46392 -
1696845500.8993204-CDS-H-canaliculatus_F_contig100:46288..463921696845500.8993204-CDS-H-canaliculatus_F_contig100:46288..46392Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig100 46289..46392 -
1622928627.966875-CDS-H-canaliculatus_F_contig100:47436..475681622928627.966875-CDS-H-canaliculatus_F_contig100:47436..47568Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig100 47437..47568 -
1696845500.907306-CDS-H-canaliculatus_F_contig100:47436..475681696845500.907306-CDS-H-canaliculatus_F_contig100:47436..47568Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig100 47437..47568 -
1622928627.981423-CDS-H-canaliculatus_F_contig100:48027..482891622928627.981423-CDS-H-canaliculatus_F_contig100:48027..48289Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig100 48028..48289 -
1696845500.921113-CDS-H-canaliculatus_F_contig100:48027..482891696845500.921113-CDS-H-canaliculatus_F_contig100:48027..48289Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig100 48028..48289 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig100.28.1prot_H-canaliculatus_F_contig100.28.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig100 45221..48289 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig100.28.1

>prot_H-canaliculatus_F_contig100.28.1 ID=prot_H-canaliculatus_F_contig100.28.1|Name=mRNA_H-canaliculatus_F_contig100.28.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=225bp
MLRSFFKIFVNYSPPMNMGVSIMKKVPFRMNKCNGTYTRNTAVRIIPHTN
TPISRRSWGYVTEAYDDFPDYVPNMGAWGESKPGNTPEAYPADSLDLEAF
WNGGAEAVDFHDIPVVDRPCFVEMKQFIDNEGLTMLPSETELLERDIQNE
RRARAKARKERFADEPDEDLVDDTLDDVPLGDEIEVGVIDVPPPPVDFDD
SDGYDDGYDLDEGGIQGAESEGMY*
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mRNA from alignment at H-canaliculatus_F_contig100:45100..49820-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig100.28.1 ID=mRNA_H-canaliculatus_F_contig100.28.1|Name=mRNA_H-canaliculatus_F_contig100.28.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4721bp|location=Sequence derived from alignment at H-canaliculatus_F_contig100:45100..49820- (Hapterophycus canaliculatus Oshoro5f female)
GCCCACCAATCTGGTCAGCGAAGGCACAGACGGGCAGCTCTTATGCAGCA GTATCGTAATACGCGGAGAAAGTTGACGCATAGCCAAGGCGAGTGGAATG GTAGGGAAAATCATTTTCGAGATACAGGATCGATCGTGAAATCGGGGACA CACAGAAGTCAACCCCACGCGCAACGGCGGCTGTACACTGAAACGCTTCC ATGGACGCCGATTGTTTATGGTTGACGAAAAGCTTCGACCAACTCCTCAA GTTAGCCAGGAGTTCGAGGTACACGAGAGGAGTTGTCCGCTGTCCTGTGG GCTGCAGGCCACAGCTGGCTTCGCCATTTGTGCAGCCTTATGGTTTGATG AAAAATAATTGGCGTTTTACACCCATGTTTATGGTCTCAGAATCTTACAA AGATATCTTGCAAGATTTTCGTTCCACTTTGTGTTGGAGGAAAACTTCGC GGAATTCTTCTCCACGATTTTCATGTCGTTCGAAATCGGCCATTTCGAGC AAATCCTCGGCCAAGATGCGCTTTTCCGGCACCTCGTGAAAATATTGTCA AGAGGCGGCGAGATTGTGTTGCTCTGTAGACTGCAGTCCACAACACTCGT CGTTCCACCCCCACTACTCAACGCAGCGAGCTCGTAAAGGGCTCCGGACA ACCCTAAATACTTTATCCCAGCATATCAGCCGCTGTGGCGTGGCGGGAGC TCGTCAGTCGTGCGGAAACTACGCATTTGGGGAGGGTGGCTTGGGGAAAG AGGAATCGTGTTCATTTGCGGCTCCAACCAGCGAAGAGTTCGCTGTTTGC TTGTAGACGACACCATACCGCCACTCAGTCCTCACCCCCTAGCCCATGTA TTCATACCAAACCTCCTGCGTTATCCTCTGCAGAGATGTGTCTCATCCGG GCGCGCGAGTGTTGGCATAGGGTACCACCAATCGGCAGAGAGACGCGCGT TCCGTGTACTCAATGTGTGCTGTTGGTTCCTCTTTGAAGCGGGTGAACAT CTGTGGCTCTAGAGCGAAGTAGGAAAAAAACCCGATCCCATCACGTGCAC GTGACATCTTCCAATCTTCCAGTACACAAGGCATGCGTCTCCCCGCTGAT TGAAGAAGCCAACTGCTGATCTACGCCCACCCAGATCAGAAACGCTCGCG GAAGTGATAGCGAAGGAGGTTCCACGTAAATGCGCATTCTCAAAAGACGA GAGCGGGCGTGCGATGTAGAGTTGTCTCCTCTCCGGCAGATTCTCTTTTT CCGTCGGGTTTCGAAATGTACTTCTACTGCTGAAGACACTTTGGTTTGCA TGACTGGCGTGCATTTACTACTGCGAACGGCCAACACTTCGCAAGACGGT ATGTTCAGGAGTGTCCGGAGGTCTTTTCGGGCTGCCTACATCCACAGTTC ATGGCGCATCCGTAGTTACTGTACCATATGTCGTTGACAACCCTTAGACC AAATTCCGCCGCCTGCTCGAACGTTTGAGATATCAACGATTTTTCTCCCA AAGTAGCCGGAACGAAATCTTCGCTTGCAAAATGTTAAGATCATTTTTCA AGATATTTGTGAATTATTCACCCCCCATGAACATGGGTGTTAGTATTATG AAAAAAGTTCCCTTCCGCATGAACAAGTGCAACGGAACCTATACTCGCAA CACTGCTGTGCGCATCATCCCCCATACGAACACGCCCATTTCGCGCCGCA GTTGGGGGTACGTAACGGAAGCCTACGACGACTTCCCAGACTACGTGCCC AACATGGGCGCTTGGGGGGAATCGAAGCCAGGAAACACTCCTGGTGAGAG TTATGGAAATAACCATGTGTCCATGAACGTATGCATGAGCTAGGGATATG AAAGAACACGTGCAAGAAAGATGGGAAATCGGAGCAGGGGGTGAGAGGGG AGAGGGGGACATGACGTGCAGTCCTGGTCCTGTTGTCGTGGCCTTGCCTG CGTTGGTTTTGCGATGAAAACGGATAATAGGCGTGGTCACAATTCCATAT CGAGCAGGGGCGCGAGTGTTGATGTGAATTTAATCTCGATGACTCTAGGT CAAGATGAGCACAGGCGGAAAGGATGTTCCTGGATGGGCGTAGCAGCAAG CTTGGCGGCATTTGTATCGACGTACACAAGAAAGTTTCCATGCCAACCAA AACGGGCCACAAGCAAGTGATCTGTTCCCACGCCAGGCGCACCACAACAC GCCTCGTTTTGACGTAGAGCAATGTATTTCCCGTGGGTCTTGGCCATTGC AGAGGCTTACCCAGCGGACTCGCTGGATTTGGAGGCGTTCTGGAACGGGG GGGCGGAGGCGGTTGACTTTCACGACATTCCTGTCGTCGACCGGCCTTGC TTCGTGGAGATGAAGCAGTTCATCGACAACGAAGGTCAGTCAGCGAATCC GTCCGGGAGGCGCTCGTGATCTTGCTAATTTTTATCGTACCGCGCGTTTT CGACGTGGTAGGATGCTCGCGACAAATGCAGGACGCTTATGGGCCTGCGA AGGCGCTCAAATATGGAACGCAAGTCAAATTTCGGATCCAGCCACAAGCA GTTGCTCTTATTTCGACGCGCACATCGTGTGTAAGTAGTTGATTGTATCG CCAGATCGCTACTACATTTCAAGTTCAGCTTCACGTGAGGGCAAGCTTCA TGTGTGAGCTGCATGTACGCTACACATGCTGAATCCACGGCTTTCTGCAC TGTTTAACCTGCATTCTGGTGTTGCCAGAGTTGCAAAGCAGTACAAGCGA CTCAACAACCCAACGTCAACACCGACGGTGGCGCTAGACCTCCAAGCCCC AACCCGCCAACCCTCGAACCATACCGTTACCCCTTTGGAACATCGCCCAC ACGCCCACCCGTGTTTTTAAAACCTAAGACCCCTCTGCCCACGTTGAAAT TCTCCGCTTGGAATTCGCCCCCAGACTCCCTCCCAAATACTTTTGGCCAT GACCTCGCTACCCGGTCACCATGGGTCGAATGGACATCGAATCGACAGTC CAGCAATAAAAGTTCACTCCCTACCCGACTCTTTCACAAACCCCGATAAC CGGTCAGCAGTGCTCCGTGTTGTTGTAGATAGCAACGCCAACGTTCACGT TGATTGGTAGCTATTGGCGTGGAAAAATAAGAAGCCACGTGGGTGGAGCG GAGTCGGTTCGATCAGGAAGAACGCAAGTGGTGGCCTCGTTCCCGTGGGC AGTGCAAGTTTGTTGAAGTGTTGTGTCGCTTTTTTCACGCTTGGGCTCAT CAGGACGAGGGATCACTCCTCCAAAAGCGACGGCGACCGTCAACGGCCCG GGGAGCTATCAAGTTTGAGTCGCCATCGCTTGCCTGGCTAGCGTGCGAAA TCAGAAAGAATGCTGTGCGGCGCTCACCAGTTGGACGTTCCGTGTTTTTT CTGCCCCACACACGTGACGAAAGCACAGGCCTTACGATGCTGCCGTCAGA GACGGAACTGTTGGAGCGTGATATCCAAAACGAGCGAAGAGCTCGGGCGA AAGCTAGGAAAGAGCGCTTCGCTGATGAACCGGTGAGTGCGCGGTGGGGG CTACGTGAGGTGCTTGCGTTCAGCGGGATCCCGATAGGCTGATGCAGCCG GCGAGCTTTCTACCTTATACTCCAATAAGTGTAGTTCGCTTATCGGGCCG CGATTGCTGTGCGTGGTGTACAAGTAGGGCTTTCACTTCCCTAATGGAAC GGGCTCGATATGTCCTACAAGGCTGTCGAGTCGGTAGGGTGGGTTGTTGG CCGACAGAGCAACATCCTGGCCGTCTTGGCCTTGCATATACTTGCCTTTG ATTGAATGCCCGGATTGTAAATCGAAAGGGCCAGGGAGCACGCTCTGTTT ATCCGCATGGAGCTACCTTGCCTGACCCTTATCCGCTATTGCGACGCAGT AAGCGGAGTGATGCATCTTGCGGGCACCTGACGACAGTGGTTGAGGTATC AATATTTCACCCGATACTTCAACGAAGTCAAGCCTCAAATAGATCACGTT TACCAGTCGGCATGTTGTCTGCGCTTCGCGTAAGCCGCGCAATAAGTCTA AACCTTCTCCCGAGCCGCCCCTCGCTGAATTCTCGATTTTCTCTTTTTCA GCCGAAATGTATTTTCGATACGAGTGAAACCCCCATGCCTGTTTCATTTG CACCCTTCACGAGTCTCATGTGCGTAAGATACAAGCAGTAGTTTTGCAAC GCTCTTCGGCCCCAAAACACATTACTTTCCCCTCATATCCTTGTGCGCGC CAGACCTTGGCACGCCAAACGCCTCTCCATCCCCCCACGCTTCTTTATCT TTTTCAATGCACCCTCTCTTGTCCGTTCGATCATCCGATGTCATCGTGTT TTCGTGTTTCGTTTTCATGTGTGTGGTGGTGCAAACGTTCCTCGAAACGG CGCGTGAACCACGACCGTATCAGGATGAGGACCTGGTTGACGACACACTG GACGACGTGCCCCTGGGCGACGAAATTGAGGTCGGCGTCATCGACGTGCC GCCACCGCCCGTCGATTTCGACGACAGCGATGGTTACGATGACGGATACG ATTTAGACGAGGGTGGTATTCAAGGAGCTGAGAGCGAAGGAATGTACTAG GCGAAAGCGCCGGCTCAACTTCGAGGTGATATGGTTGTAGAATCGGTTAG CTTCTCCTTGGTTACCTCGAGGCAGCAGTTATTCCTCGCTATGCAGAACA CTTATGATCGGTTTTGACGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig100:45100..49820-

>mRNA_H-canaliculatus_F_contig100.28.1 ID=mRNA_H-canaliculatus_F_contig100.28.1|Name=mRNA_H-canaliculatus_F_contig100.28.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1350bp|location=Sequence derived from alignment at H-canaliculatus_F_contig100:45100..49820- (Hapterophycus canaliculatus Oshoro5f female)
ATGTTAAGATCATTTTTCAAGATATTTGTGAATTATTCACCCCCCATGAA
CATGGGTGTTAGTATTATGAAAAAAGTTCCCTTCCGCATGAACAAGTGCA
ACGGAACCTATACTCGCAACACTGCTGTGCGCATCATCCCCCATACGAAC
ACGCCCATTTCGCGCCGCAGTTGGGGGTACGTAACGGAAGCCTACGACGA
CTTCCCAGACTACGTGCCCAACATGGGCGCTTGGGGGGAATCGAAGCCAG
GAAACACTCCTGATGTTAAGATCATTTTTCAAGATATTTGTGAATTATTC
ACCCCCCATGAACATGGGTGTTAGTATTATGAAAAAAGTTCCCTTCCGCA
TGAACAAGTGCAACGGAACCTATACTCGCAACACTGCTGTGCGCATCATC
CCCCATACGAACACGCCCATTTCGCGCCGCAGTTGGGGGTACGTAACGGA
AGCCTACGACGACTTCCCAGACTACGTGCCCAACATGGGCGCTTGGGGGG
AATCGAAGCCAGGAAACACTCCTGAGGCTTACCCAGCGGACTCGCTGGAT
TTGGAGGCGTTCTGGAACGGGGGGGCGGAGGCGGTTGACTTTCACGACAT
TCCTGTCGTCGACCGGCCTTGCTTCGTGGAGATGAAGCAGTTCATCGACA
ACGAAGAGGCTTACCCAGCGGACTCGCTGGATTTGGAGGCGTTCTGGAAC
GGGGGGGCGGAGGCGGTTGACTTTCACGACATTCCTGTCGTCGACCGGCC
TTGCTTCGTGGAGATGAAGCAGTTCATCGACAACGAAGGCCTTACGATGC
TGCCGTCAGAGACGGAACTGTTGGAGCGTGATATCCAAAACGAGCGAAGA
GCTCGGGCGAAAGCTAGGAAAGAGCGCTTCGCTGATGAACCGGCCTTACG
ATGCTGCCGTCAGAGACGGAACTGTTGGAGCGTGATATCCAAAACGAGCG
AAGAGCTCGGGCGAAAGCTAGGAAAGAGCGCTTCGCTGATGAACCGGATG
AGGACCTGGTTGACGACACACTGGACGACGTGCCCCTGGGCGACGAAATT
GAGGTCGGCGTCATCGACGTGCCGCCACCGCCCGTCGATTTCGACGACAG
CGATGGTTACGATGACGGATACGATTTAGACGAGGGTGGTATTCAAGGAG
CTGAGAGCGAAGGAATGTACTAGGATGAGGACCTGGTTGACGACACACTG
GACGACGTGCCCCTGGGCGACGAAATTGAGGTCGGCGTCATCGACGTGCC
GCCACCGCCCGTCGATTTCGACGACAGCGATGGTTACGATGACGGATACG
ATTTAGACGAGGGTGGTATTCAAGGAGCTGAGAGCGAAGGAATGTACTAG
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