mRNA_H-canaliculatus_F_contig13592.2899.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13592.2899.1
Unique NamemRNA_H-canaliculatus_F_contig13592.2899.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13592.2899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13592contigH-canaliculatus_F_contig13592:322..675 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size354
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929102.1867235-CDS-H-canaliculatus_F_contig13592:321..6751622929102.1867235-CDS-H-canaliculatus_F_contig13592:321..675Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13592 322..675 -
1696845679.468552-CDS-H-canaliculatus_F_contig13592:321..6751696845679.468552-CDS-H-canaliculatus_F_contig13592:321..675Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13592 322..675 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13592.2899.1prot_H-canaliculatus_F_contig13592.2899.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13592 322..675 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13592.2899.1

>prot_H-canaliculatus_F_contig13592.2899.1 ID=prot_H-canaliculatus_F_contig13592.2899.1|Name=mRNA_H-canaliculatus_F_contig13592.2899.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=118bp
ALQLHNNRRGGCCLCSLLCSSLPDRREHCARCWHGAANAALSAALGRRGL
AASCSSRTSASRSFRGYILSSSTNNSKPSSTFSRSGRRNMSSSRKPCATS
SRRAYPRGGRPFACNRRS
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mRNA from alignment at H-canaliculatus_F_contig13592:322..675-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13592.2899.1 ID=mRNA_H-canaliculatus_F_contig13592.2899.1|Name=mRNA_H-canaliculatus_F_contig13592.2899.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=354bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13592:322..675- (Hapterophycus canaliculatus Oshoro5f female)
GCTTTACAGCTCCACAACAATAGACGTGGAGGCTGCTGCCTCTGCTCTCT
GCTCTGCAGCTCCCTCCCCGATCGCCGTGAGCACTGTGCACGCTGCTGGC
ACGGAGCTGCCAACGCTGCCTTGTCCGCTGCCTTGGGCCGACGCGGTCTG
GCCGCCTCCTGCAGCAGCAGGACCTCTGCTTCCCGAAGCTTCCGGGGCTA
CATCCTCAGCAGCAGCACGAACAATAGCAAGCCCTCCAGCACCTTCAGCA
GGAGCGGCAGGAGGAACATGTCCTCCAGCCGCAAGCCCTGTGCCACCTCC
AGCAGGAGGGCCTACCCCCGAGGCGGCAGGCCCTTCGCCTGCAATAGGAG
GAGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13592:322..675-

>mRNA_H-canaliculatus_F_contig13592.2899.1 ID=mRNA_H-canaliculatus_F_contig13592.2899.1|Name=mRNA_H-canaliculatus_F_contig13592.2899.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=708bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13592:322..675- (Hapterophycus canaliculatus Oshoro5f female)
GCTTTACAGCTCCACAACAATAGACGTGGAGGCTGCTGCCTCTGCTCTCT
GCTCTGCAGCTCCCTCCCCGATCGCCGTGAGCACTGTGCACGCTGCTGGC
ACGGAGCTGCCAACGCTGCCTTGTCCGCTGCCTTGGGCCGACGCGGTCTG
GCCGCCTCCTGCAGCAGCAGGACCTCTGCTTCCCGAAGCTTCCGGGGCTA
CATCCTCAGCAGCAGCACGAACAATAGCAAGCCCTCCAGCACCTTCAGCA
GGAGCGGCAGGAGGAACATGTCCTCCAGCCGCAAGCCCTGTGCCACCTCC
AGCAGGAGGGCCTACCCCCGAGGCGGCAGGCCCTTCGCCTGCAATAGGAG
GAGCGCTTTACAGCTCCACAACAATAGACGTGGAGGCTGCTGCCTCTGCT
CTCTGCTCTGCAGCTCCCTCCCCGATCGCCGTGAGCACTGTGCACGCTGC
TGGCACGGAGCTGCCAACGCTGCCTTGTCCGCTGCCTTGGGCCGACGCGG
TCTGGCCGCCTCCTGCAGCAGCAGGACCTCTGCTTCCCGAAGCTTCCGGG
GCTACATCCTCAGCAGCAGCACGAACAATAGCAAGCCCTCCAGCACCTTC
AGCAGGAGCGGCAGGAGGAACATGTCCTCCAGCCGCAAGCCCTGTGCCAC
CTCCAGCAGGAGGGCCTACCCCCGAGGCGGCAGGCCCTTCGCCTGCAATA
GGAGGAGC
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