mRNA_H-canaliculatus_F_contig13590.2898.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13590.2898.1
Unique NamemRNA_H-canaliculatus_F_contig13590.2898.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13590.2898.1 vs. uniprot
Match: D8LFH3_ECTSI (Glucosylceramidase, family GH30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFH3_ECTSI)

HSP 1 Score: 297 bits (760), Expect = 9.480e-94
Identity = 126/169 (74.56%), Postives = 151/169 (89.35%), Query Frame = 1 
Query:    1 VVAWAREMMRDEETSQYVDGMGFHWYYDSGNRLMDGSVEWGAVNTTHHVL-GEDKFLLSTESCNCPNVQHSLDGGWQRAEHTAHEIIADLNTWATGWVDWNLMLSYDGGPNHLGNLCDSPVVANKDHTDVIFQPMFYFLGHISKFSQPGARRLKSHVTGVYSKGGGTPA 504
            +V WA EMM +EET+QYVDGM FHWY  S NRL+DGS+ WGA+NTTH++L G DKF+LSTESCNCPNV HSL+GGW+RAEHT HE+IAD+N+W+TGWVDWNLMLSYDGGPNH GNLCD+P+V+N++HTDVIFQPMFY +GH+SKF+QPGARRLKSHVTG+Y  GG  P+
Sbjct:  358 LVTWAEEMMSNEETAQYVDGMAFHWYVASWNRLLDGSMGWGALNTTHNLLSGRDKFILSTESCNCPNVDHSLEGGWKRAEHTLHEMIADVNSWSTGWVDWNLMLSYDGGPNHAGNLCDTPIVSNENHTDVIFQPMFYSIGHMSKFAQPGARRLKSHVTGLYQNGGSGPS 526
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BLAST of mRNA_H-canaliculatus_F_contig13590.2898.1 vs. uniprot
Match: A0A835Z8L7_9STRA (Glucosylceramidase, family GH30 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8L7_9STRA)

HSP 1 Score: 214 bits (544), Expect = 5.960e-63
Identity = 88/164 (53.66%), Postives = 116/164 (70.73%), Query Frame = 1 
Query:    1 VVAWAREMMRDEETSQYVDGMGFHWYYDSGNRLMDGSVEWGAVNTTHHVL-GEDKFLLSTESCNCPNVQHSLDGGWQRAEHTAHEIIADLNTWATGWVDWNLMLSYDGGPNHLGNLCDSPVVANKDHTDVIFQPMFYFLGHISKFSQPGARRLKSHVTGVYSKG 489
            +VAW + +M D  T++Y+DGM FHWYY   +R +DGS  WG V     +L    KF+LS+ESC+CP V H+LDG W RAEH AH+++ADL   A GWVDWN+ L YDGGPNH GNLCD P+ AN+DH+  +  PM++F+GH+S+F  PG+RR+ SH  G Y  G
Sbjct:  258 MVAWTQILMHDPATAKYLDGMAFHWYYGGMDRGLDGSYGWGNVEEAGALLLPHGKFMLSSESCHCPFVDHTLDGSWARAEHLAHDVLADLEAGAGGWVDWNIFLDYDGGPNHAGNLCDVPIYANEDHSGAVVGPMYHFMGHVSRFVPPGSRRIASHARGAYGAG 421
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BLAST of mRNA_H-canaliculatus_F_contig13590.2898.1 vs. uniprot
Match: A0A7S3HLU9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HLU9_9STRA)

HSP 1 Score: 178 bits (451), Expect = 8.920e-51
Identity = 83/169 (49.11%), Postives = 110/169 (65.09%), Query Frame = 1 
Query:    1 VVAWAREMMRDEETS---------QYVDGMGFHWYYDSGNRLMDGSVEWGAVNTTHHVLGEDKFLLSTESCNCPNVQHSLDGGWQRAEHTAHEIIADLNTWATGWVDWNLMLSYDGGPNHLGNLCDSPVVANKDHTDVIFQPMFYFLGHISKFSQPGARRLKSHVTGVY 480
            +V W   +M  +E S         +YVDGM FHWY   G R+ DG+  + AVN +HH L  + FLL+TE C+CP V+    G W RAE  AH+++ DL   A GWVDWNL+++++GGPNHLGNLCD+ +V N+D TDV+ QP F++L H SKF  PGA R+KS   G Y
Sbjct:   94 LVDWTETLMVQQEVSKKHQEKKKHEYVDGMAFHWY-SGGARVEDGTYGYDAVNASHH-LAPEAFLLATEGCSCPGVEV---GNWLRAERLAHDVMFDLQNHAQGWVDWNLLVNHEGGPNHLGNLCDAALVTNEDLTDVVVQPKFHYLAHFSKFVPPGAVRIKSTAVGNY 257
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BLAST of mRNA_H-canaliculatus_F_contig13590.2898.1 vs. uniprot
Match: A0A662Y065_9STRA (Ricin B-type lectin domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y065_9STRA)

HSP 1 Score: 182 bits (461), Expect = 9.680e-51
Identity = 79/164 (48.17%), Postives = 105/164 (64.02%), Query Frame = 1 
Query:    1 VVAWAREMMRDEETSQYVDGMGFHWYYDSGNRLMDGSVEWGAVNTTHHVLGEDKFLLSTESCNCPNVQHSLDGGWQRAEHTAHEIIADLNTWATGWVDWNLMLSYDGGPNHLGNLCDSPVVANKDHTDVIFQPMFYFLGHISKFSQPGARRLKSHVTGVYSKGG 492
            V  WA  +      SQYVDGM FHWY D G R +DG+     +N TH V  E +F+L+TESCNCP V H  D  W RA+   H+I+ADLN +  GWVDWNL+L + GGPNH GN CD+P++  +   D   QPM+YF+ H SK+   G+RR+K+HV   +++ G
Sbjct:  329 VQEWAEVIYNHPTASQYVDGMAFHWYEDGGERYLDGAEYHDHLNDTHFV-DETRFMLATESCNCPGVAHG-DDAWFRAQRYGHDIMADLNNYVVGWVDWNLLLDHTGGPNHKGNNCDAPIIVTESGKDFFVQPMYYFIQHFSKYIPVGSRRVKTHVAARFAEPG 490
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BLAST of mRNA_H-canaliculatus_F_contig13590.2898.1 vs. uniprot
Match: A0A8J4S4Y0_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A8J4S4Y0_9STRA)

HSP 1 Score: 177 bits (448), Expect = 4.060e-49
Identity = 79/161 (49.07%), Postives = 106/161 (65.84%), Query Frame = 1 
Query:   10 WAREMMRDEETSQYVDGMGFHWYYDSGNRLMDGSVEWGAVNTTHHVLGEDKFLLSTESCNCPNVQHSLDGGWQRAEHTAHEIIADLNTWATGWVDWNLMLSYDGGPNHLGNLCDSPVVANKDHTDVIFQPMFYFLGHISKFSQPGARRLKSHVTGVYSKGG 492
            WA E+      +QYVDGM FHWY D   R MDG      +N TH V    +FLL+TESCNCP+V H  D  W RA+   H+I+ DLN + +GWVDWNL+L + GGPNHL N CD+P++ ++D TD   QPM+YF+ H SK+   G+RR+K+HV   +++ G
Sbjct:  289 WAEEIYNHPTAAQYVDGMAFHWYDDE--RYMDGVEYHERLNDTHFV-DPSRFLLATESCNCPDVAHG-DEAWFRAQRYGHDILTDLNNYVSGWVDWNLLLDHKGGPNHLDNNCDAPIILSEDGTDFHIQPMYYFIQHFSKYIPVGSRRVKTHVAARFAQPG 445
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BLAST of mRNA_H-canaliculatus_F_contig13590.2898.1 vs. uniprot
Match: A0A5D6XX97_9STRA (Glyco_hydro_30 domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XX97_9STRA)

HSP 1 Score: 172 bits (435), Expect = 9.600e-49
Identity = 75/165 (45.45%), Postives = 102/165 (61.82%), Query Frame = 1 
Query:   10 WAREMMRDEETSQYVDGMGFHWYYDSGNRLMDGSVEWGAVNTTHHVLGEDKFLLSTESCNCP----NVQHSLDGGWQRAEHTAHEIIADLNTWATGWVDWNLMLSYDGGPNHLGNLCDSPVVANKDHTDVIFQPMFYFLGHISKFSQPGARRLKSHVTGVYSKGG 492
            WA  + R E  S+YVDG+ FHWY   G R          +N TH+V  E +F+L+TESCNCP    N   + D  W RA+   H+I+ D+N WA GWVDWNL+L + GGPNHLGN CD+P++ ++   D   QPM+YF+ H SKF   G+RR+ + V+  + K G
Sbjct:  189 WAETIFRHEGASKYVDGIAFHWY--DGQRXXXXXXXHDRLNDTHYV-DESRFMLATESCNCPEKGGNAIAAGDEAWMRAQRYGHDILTDINNWAVGWVDWNLILDHTGGPNHLGNNCDAPIIIDETEKDYFIQPMYYFIQHFSKFVPSGSRRVHTDVSATFKKAG 350
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BLAST of mRNA_H-canaliculatus_F_contig13590.2898.1 vs. uniprot
Match: A0A3F2RBF7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RBF7_9STRA)

HSP 1 Score: 176 bits (447), Expect = 9.860e-49
Identity = 79/161 (49.07%), Postives = 106/161 (65.84%), Query Frame = 1 
Query:   10 WAREMMRDEETSQYVDGMGFHWYYDSGNRLMDGSVEWGAVNTTHHVLGEDKFLLSTESCNCPNVQHSLDGGWQRAEHTAHEIIADLNTWATGWVDWNLMLSYDGGPNHLGNLCDSPVVANKDHTDVIFQPMFYFLGHISKFSQPGARRLKSHVTGVYSKGG 492
            WA E+      +QYVDGM FHWY D   R MDG      +N TH V    +FLL+TESCNCP+V H  D  W RA+   H+I+ DLN + +GWVDWNL+L + GGPNHL N CD+P++ ++D TD   QPM+YF+ H SK+   G+RR+K+HV   +++ G
Sbjct:  342 WAEEIYNHPTAAQYVDGMAFHWYDDE--RYMDGVEYHERLNDTHFV-DPSRFLLATESCNCPDVAHG-DEAWFRAQRYGHDILTDLNNYVSGWVDWNLLLDHRGGPNHLDNNCDAPIILSEDGTDFHIQPMYYFIQHFSKYIPVGSRRVKTHVAARFAQPG 498
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BLAST of mRNA_H-canaliculatus_F_contig13590.2898.1 vs. uniprot
Match: A0A484EE37_BRELC (Ricin B-type lectin domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EE37_BRELC)

HSP 1 Score: 176 bits (446), Expect = 1.230e-48
Identity = 78/161 (48.45%), Postives = 105/161 (65.22%), Query Frame = 1 
Query:   10 WAREMMRDEETSQYVDGMGFHWYYDSGNRLMDGSVEWGAVNTTHHVLGEDKFLLSTESCNCPNVQHSLDGGWQRAEHTAHEIIADLNTWATGWVDWNLMLSYDGGPNHLGNLCDSPVVANKDHTDVIFQPMFYFLGHISKFSQPGARRLKSHVTGVYSKGG 492
            WA+ +      S+YV GMGFHWY D   R MDG V++    +  H++  ++FLLSTESCNCP V    D  W RA+   HEI++DLN +A GWVDWNL+L + GGPNH GNLCD+P++  +D  D   QPM+YF+ H SK+  PG+RR+   +   Y+K G
Sbjct:  325 WAQVIYNHPTASKYVSGMGFHWYQDGAARKMDG-VDYPEHLSDIHLMDPNRFLLSTESCNCPGVAVG-DDAWFRAQRYGHEIMSDLNNFAVGWVDWNLLLDHMGGPNHKGNLCDAPIILTEDGKDFRLQPMYYFIQHFSKYLLPGSRRVSVQIAAHYAKPG 483
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13590.2898.1 vs. uniprot
Match: A0A225X206_9STRA (GH30 glucocerebrosidase/glucosylceramidase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X206_9STRA)

HSP 1 Score: 176 bits (446), Expect = 1.340e-48
Identity = 77/161 (47.83%), Postives = 101/161 (62.73%), Query Frame = 1 
Query:   10 WAREMMRDEETSQYVDGMGFHWYYDSGNRLMDGSVEWGAVNTTHHVLGEDKFLLSTESCNCPNVQHSLDGGWQRAEHTAHEIIADLNTWATGWVDWNLMLSYDGGPNHLGNLCDSPVVANKDHTDVIFQPMFYFLGHISKFSQPGARRLKSHVTGVYSKGG 492
            WA  +      S+YVDGM FHWY D G R MDG      +N TH++  + +F+L+TESCNCP V    D  W RA+   H+I+ DLN    GWVDWNL+L + GGPNH GNLCD+P++  +D TD   QPM+YF+ H SKF   G+RR+   V   ++K G
Sbjct:  333 WAEVIYNHPTASKYVDGMAFHWYEDGGERYMDGVEYPEHLNDTHYI-DQSRFMLATESCNCPGVATGKDA-WFRAQRYGHDILTDLNNHVVGWVDWNLLLDHKGGPNHKGNLCDAPIILTEDETDFKIQPMYYFIQHFSKFIPAGSRRVNVKVAAQFAKPG 491
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13590.2898.1 vs. uniprot
Match: A0A5D6YHP6_9STRA (Ricin B-type lectin domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YHP6_9STRA)

HSP 1 Score: 174 bits (440), Expect = 1.900e-48
Identity = 77/166 (46.39%), Postives = 107/166 (64.46%), Query Frame = 1 
Query:   10 WAREMMRDEETSQYVDGMGFHWYYDSGNRLMDGSVEWGAVNTTHHVLGEDKFLLSTESCNCPN-----VQHSLDGGWQRAEHTAHEIIADLNTWATGWVDWNLMLSYDGGPNHLGNLCDSPVVANKDHTDVIFQPMFYFLGHISKFSQPGARRLKSHVTGVYSKGG 492
            WA  + RD + +QYVDG+ FHWY  +  R MDG      +N TH+V  E +F+L+TESCNCP      V H  +  W R +  AH+II D+N W  GWVDWNL+L + GGPNHLGN CD+P++ ++   D   QPM+YF+ H SKF   G+RR+ + V+ +++K G
Sbjct:  208 WAETIFRDPKANQYVDGIAFHWY--NYERYMDGVEFHERLNDTHYV-DESRFMLATESCNCPEIGGTAVAHGSEA-WFRGQRYAHDIITDINNWVVGWVDWNLILDHRGGPNHLGNNCDAPIIIDESEKDYFIQPMYYFIQHFSKFVPSGSRRVHTDVSAMFTKSG 369
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13590.2898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFH3_ECTSI9.480e-9474.56Glucosylceramidase, family GH30 n=1 Tax=Ectocarpus... [more]
A0A835Z8L7_9STRA5.960e-6353.66Glucosylceramidase, family GH30 n=1 Tax=Tribonema ... [more]
A0A7S3HLU9_9STRA8.920e-5149.11Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A662Y065_9STRA9.680e-5148.17Ricin B-type lectin domain-containing protein n=2 ... [more]
A0A8J4S4Y0_9STRA4.060e-4949.07Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A5D6XX97_9STRA9.600e-4945.45Glyco_hydro_30 domain-containing protein (Fragment... [more]
A0A3F2RBF7_9STRA9.860e-4949.07Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A484EE37_BRELC1.230e-4848.45Ricin B-type lectin domain-containing protein n=1 ... [more]
A0A225X206_9STRA1.340e-4847.83GH30 glucocerebrosidase/glucosylceramidase n=1 Tax... [more]
A0A5D6YHP6_9STRA1.900e-4846.39Ricin B-type lectin domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13590contigH-canaliculatus_F_contig13590:162..2886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score284.3
Seed ortholog evalue3.8e-74
Seed eggNOG ortholog2880.D8LFH3
KEGG rclassRC00059,RC00451
KEGG koko:K01201
KEGG ReactionR01498
KEGG Pathwayko00511,ko00600,ko01100,ko04142,map00511,map00600,map01100,map04142
GOsGO:0000323,GO:0003008,GO:0003674,GO:0003824,GO:0004348,GO:0004553,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005773,GO:0006629,GO:0006643,GO:0006664,GO:0006665,GO:0006672,GO:0006677,GO:0006678,GO:0006680,GO:0006687,GO:0006807,GO:0006950,GO:0006986,GO:0007275,GO:0007568,GO:0007610,GO:0007611,GO:0007613,GO:0007626,GO:0008150,GO:0008152,GO:0008340,GO:0008344,GO:0009056,GO:0009987,GO:0010033,GO:0010259,GO:0016042,GO:0016787,GO:0016798,GO:0019377,GO:0019725,GO:0030149,GO:0030534,GO:0032501,GO:0032502,GO:0033554,GO:0034620,GO:0034641,GO:0035966,GO:0035967,GO:0042221,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044424,GO:0044444,GO:0044464,GO:0046466,GO:0046477,GO:0046479,GO:0046514,GO:0048856,GO:0050877,GO:0050890,GO:0050896,GO:0051716,GO:0060249,GO:0065007,GO:0065008,GO:0070050,GO:0070887,GO:0071310,GO:0071704,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575,GO:1903509
EggNOG free text desc.glucosylceramidase activity
EggNOG OGsCOG5520@1,KOG2566@2759
EC3.2.1.45
COG Functional cat.M
CAZyGH30
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBeta-glucosidase, family GH30
Ec32 orthologEc-04_002190.2
Exons4
Model size525
Cds size504
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13590.2898.1prot_H-canaliculatus_F_contig13590.2898.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13590 183..2886 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929102.0174646-UTR-H-canaliculatus_F_contig13590:161..1821622929102.0174646-UTR-H-canaliculatus_F_contig13590:161..182Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13590 162..182 +
1696845679.4068449-UTR-H-canaliculatus_F_contig13590:161..1821696845679.4068449-UTR-H-canaliculatus_F_contig13590:161..182Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13590 162..182 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929102.037622-CDS-H-canaliculatus_F_contig13590:182..2951622929102.037622-CDS-H-canaliculatus_F_contig13590:182..295Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13590 183..295 +
1696845679.4175897-CDS-H-canaliculatus_F_contig13590:182..2951696845679.4175897-CDS-H-canaliculatus_F_contig13590:182..295Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13590 183..295 +
1622929102.0490773-CDS-H-canaliculatus_F_contig13590:831..9841622929102.0490773-CDS-H-canaliculatus_F_contig13590:831..984Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13590 832..984 +
1696845679.426178-CDS-H-canaliculatus_F_contig13590:831..9841696845679.426178-CDS-H-canaliculatus_F_contig13590:831..984Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13590 832..984 +
1622929102.065129-CDS-H-canaliculatus_F_contig13590:1937..20221622929102.065129-CDS-H-canaliculatus_F_contig13590:1937..2022Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13590 1938..2022 +
1696845679.4431813-CDS-H-canaliculatus_F_contig13590:1937..20221696845679.4431813-CDS-H-canaliculatus_F_contig13590:1937..2022Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13590 1938..2022 +
1622929102.0826595-CDS-H-canaliculatus_F_contig13590:2733..28861622929102.0826595-CDS-H-canaliculatus_F_contig13590:2733..2886Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13590 2734..2886 +
1696845679.4583383-CDS-H-canaliculatus_F_contig13590:2733..28861696845679.4583383-CDS-H-canaliculatus_F_contig13590:2733..2886Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13590 2734..2886 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13590.2898.1

>prot_H-canaliculatus_F_contig13590.2898.1 ID=prot_H-canaliculatus_F_contig13590.2898.1|Name=mRNA_H-canaliculatus_F_contig13590.2898.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=168bp
MMRDEETSQYVDGMGFHWYYDSGNRLMDGSVEWGAVNTTHHVLGEDKFLL
STESCNCPNVQHSLDGGWQRAEHTAHEIIADLNTWATGWVDWNLMLSYDG
GPNHLGNLCDSPVVANKDHTDVIFQPMFYFLGHISKFSQPGARRLKSHVT
GVYSKGGGTPAGTQPGL*
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mRNA from alignment at H-canaliculatus_F_contig13590:162..2886+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13590.2898.1 ID=mRNA_H-canaliculatus_F_contig13590.2898.1|Name=mRNA_H-canaliculatus_F_contig13590.2898.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2725bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13590:162..2886+ (Hapterophycus canaliculatus Oshoro5f female)
GTGGTGGCATGGGCGAGGGAGATGATGCGCGACGAGGAGACTTCCCAGTA
CGTGGACGGCATGGGCTTCCACTGGTACTACGACAGCGGCAACCGCCTGA
TGGACGGGAGCGTGGAATGGGGCGCCGTCAACACGTGAGGGAGAAAGATT
GATGGCCTTGCTCTTTTCTTCTCTTTTTCAACGTTGGTGGTCGACGTCCT
GGGCTGGAAGACGTGATTCCTTATCAACCACCTCGTCGACGCTGTGTGTG
TGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGATGGGCGTAAGCTTC
GTGTGTCCGTGTTTCTTTTTACTTCTGGGCGTAAGCCTCGTGTGTCCGTG
TTATTTTTATACTTTATTGCAGGACCTCGTGATCCGAGTAGCTACATGCG
TTCGTGTAGGCGCACACGGCAAAAAAGGTCGATTGTGGCAACACGTTGCA
CGACAGCAGCAGCCGAAAACTTAACAGAGGGCGACCTTCGCACAACCAGA
GCTAGTTATAGTTCGCACGCGTGCGCATGGTTTTGTGGCCGATGACGGCT
ATAGTACTCATGACAGCAGCCGAAAATTCAACAGAGGGCGACCTTCACAC
AACCAGCGGTAATTTAAGAATTCGTGCGTGTGCGCGTGGGCTTGTCGTTG
TCGTTGCTCCTTCATGGCAGGACGCACCACGTGCTAGGCGAGGACAAGTT
CCTACTCTCCACAGAGAGCTGCAACTGCCCCAACGTGCAGCACTCCCTCG
ACGGAGGCTGGCAGAGAGCCGAGCACACGGCGCACGAGATCATCGCCGAC
CTCAACACCTGGGCAACGGGGTGGTGAGACGCGTCCTCCCTGATGGAACG
AAGGCATTGCTCCCATTATTTCGGCTGTGTTTTCCGGCAACGAAGCTTTC
GATCATGCTTTTTTGTGTGTGTGTTCCGTCGCGTCTCTTTCGCTCTTTCT
CTCTGCGCAACCGCAAGGGTCTAGTCTGTTGGGCACGCCTGTTAAAGCTC
GTTCAGGCGTCAGCCGTCCCTCGAGGCTCGAATCATTACGACGCCTCAAA
GAGCGTGTTTGTACCGGGTTGACAAAGCTCCGCATGTAACAGCAGCAGTC
AGAAGCGCGTCCTGCGGCCTCTGGCCTCGTGTTTTCCAGTTGTTATCTGG
CGTGTGAGTTCCTACGTGCTTTTCCCGTCGCGACTCCCAACGGGGGATGG
GCACGGACCGAAATTGGGGGAGCTCTGCCCCAAGCTTGATGAAGGAATCC
TCGGGGTGGGAAGTTGTGGGTGTACTGAAGTCCTTCCCACCAGGGAGCTA
TTAGTTCGAGGTGTCCAGCTGTCGTCCCTGGCCAGAAGGAAGAATTAAAA
TGGTGCTTGAAGGCCAGGAACGCAAAAGAGAAAAAAGAAGTGTGCGGCAT
GGGTCACAGAGCTGAGGAAATGGGTCCGTGTGCTGCCCCCTGGCGGCTCC
TTTCAGAAGAGCGGAGAGCGGATTCGTACCGGACTTTTTCGCACGAAGGT
GCACAGTCTCTTCCTCCACGCCAAATGTGAAAAGAGGGAATCGTCCTCGA
CAGACGTTGAGGAGGTGGCACCTTTCTCAGGGTGTCCTCCTCGTCGTGCG
TTTATTTTCTCATCTTTTGGGGGCTGGTCCACGTCCCCCGTCTCGCCCAT
CTCCGCCCTCTCTCGCCGGTGTCTCAAGACGTGGCACCACCTTCTCTGCA
CGGCGCGAGTCTTGAACAAACATCCGTGCTCCTCCCTCCCCTCTTGTCCC
ATCGGCCGCACGCGGGGTTTTGCCAGGGTGGACTGGAACCTGATGCTGAG
CTACGACGGCGGTCCGAACCACCTAGGAAACCTCTGCGACAGCCCCGTCG
TCGCAAACAAGGTAAACCGCGCGGGCAACATGTGGACTGTTTCTAAAGAA
AACATAACAGTATGATTCGCCGGAATCCGGACTTAGAAGCACCACAGTTC
TCCACACACGCGCACACGCTGCGTTGAGCTCCGTAGCTTTCTCCGTCCAT
GTTTTATGTCCTAACCAAACACAATGGACCCTCGCCGGTTGGAACTCTAC
AGAAACCTCCAGCAACGTCTCGCACGACGTACCTCAGGAGGTGTTCCCAC
GGTGTTCGTATGTCTTTCTTCAAAAAGCCAGAGTCCCACAAGATCTCGCA
AGATGCACCTGGCGACCTTATTTTGCGTCCACTGGTGATTTTTGTCCCGT
CCACCATGCTGAACCCTCACTGAACGGGTTTCAACCCGACCCCCCTGAGT
CGCTGTATTTTGTCTCCGAGGAGGGCATTCCCTACCTTGGTATCATTTAC
TCTTTTTCTTTAAAAGCCATGACACTGTCCATGTCGTGAGCGCTGTGCCA
TGTAAGCATGAGCGGGGTGACTCGAGTTCTTCCTGCTTACGACCGAGCAA
GAAAACGGAGTCTCGGCAGGACCTCGTAATTCCGAACCATTCGGCCGCAT
TTGCGTCTGCCCCCCAATCCCGGCAGACCCTGATCCCGTTGCTGCTTTTC
CTCCTCGCCGGCCTTCCCGGTTTTTTTTTTCTTCCCTTTTCTGGGATTTT
TTTCTCGGTTCTTCGGCGGCAGGATCACACGGACGTGATCTTCCAGCCGA
TGTTCTACTTCCTCGGACACATCTCCAAGTTCTCCCAGCCCGGCGCCAGG
CGCCTTAAGAGCCATGTCACCGGCGTGTACTCGAAGGGCGGGGGGACTCC
GGCGGGAACACAGCCGGGTTTGTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13590:162..2886+

>mRNA_H-canaliculatus_F_contig13590.2898.1 ID=mRNA_H-canaliculatus_F_contig13590.2898.1|Name=mRNA_H-canaliculatus_F_contig13590.2898.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1008bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13590:162..2886+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATGCGCGACGAGGAGACTTCCCAGTACGTGGACGGCATGGGCTTCCA
CTGGTACTACGACAGCGGCAACCGCCTGATGGACGGGAGCGTGGAATGGG
GCGCCGTCAACACATGATGCGCGACGAGGAGACTTCCCAGTACGTGGACG
GCATGGGCTTCCACTGGTACTACGACAGCGGCAACCGCCTGATGGACGGG
AGCGTGGAATGGGGCGCCGTCAACACGACGCACCACGTGCTAGGCGAGGA
CAAGTTCCTACTCTCCACAGAGAGCTGCAACTGCCCCAACGTGCAGCACT
CCCTCGACGGAGGCTGGCAGAGAGCCGAGCACACGGCGCACGAGATCATC
GCCGACCTCAACACCTGGGCAACGGGGTGGACGCACCACGTGCTAGGCGA
GGACAAGTTCCTACTCTCCACAGAGAGCTGCAACTGCCCCAACGTGCAGC
ACTCCCTCGACGGAGGCTGGCAGAGAGCCGAGCACACGGCGCACGAGATC
ATCGCCGACCTCAACACCTGGGCAACGGGGTGGGTGGACTGGAACCTGAT
GCTGAGCTACGACGGCGGTCCGAACCACCTAGGAAACCTCTGCGACAGCC
CCGTCGTCGCAAACAAGGGTGGACTGGAACCTGATGCTGAGCTACGACGG
CGGTCCGAACCACCTAGGAAACCTCTGCGACAGCCCCGTCGTCGCAAACA
AGGATCACACGGACGTGATCTTCCAGCCGATGTTCTACTTCCTCGGACAC
ATCTCCAAGTTCTCCCAGCCCGGCGCCAGGCGCCTTAAGAGCCATGTCAC
CGGCGTGTACTCGAAGGGCGGGGGGACTCCGGCGGGAACACAGCCGGGTT
TGTAAGATCACACGGACGTGATCTTCCAGCCGATGTTCTACTTCCTCGGA
CACATCTCCAAGTTCTCCCAGCCCGGCGCCAGGCGCCTTAAGAGCCATGT
CACCGGCGTGTACTCGAAGGGCGGGGGGACTCCGGCGGGAACACAGCCGG
GTTTGTAA
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