mRNA_H-canaliculatus_F_contig1359.2897.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1359.2897.1
Unique NamemRNA_H-canaliculatus_F_contig1359.2897.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1359.2897.1 vs. uniprot
Match: D7FQU2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQU2_ECTSI)

HSP 1 Score: 210 bits (534), Expect = 9.070e-60
Identity = 169/440 (38.41%), Postives = 196/440 (44.55%), Query Frame = 1 
Query:  196 DAPSIHTYNFTGINKKRGSITSKSGVRRQKRRYDWRPVNYLPTSHGRFSSSPGIRRPALPSERSWRDTSSDCVMNRWTASYDADCTRFQSISVMCEQRLRRACVMTEHAPMPDEFRTMAACEALGTMLPVFERYDSLVTLVLKELLRSVYEDSDLLIGQFFAWLHPGSSDQPIRTPAEVMLLKSKPHFVRCRELQSQIDELKGALEQKEKHEGTLLNNLTSARNSMRSVLGKDSLLITRFIFANWKCVVENSTTLRRRFQRARLRIWFNGLRTRLTRRMNQEAKYQLGLRERELMLHASVKEDEARNDGQPASESVAEKSQITRAASTCELIVASLLEQAHAFMAEVQSYGSGSAEENGVIMASATKMAVAAKLAEERIRLDVGDDISIEAEAI---HSTTGTQTDSVYFDGRSG-------PENSSSRNKAEALAYSTS 1485
            D+ S+ TYNFTGI+   GSI SKS +RR KR++DWRP N LPTSHG   S PG  + A P   S RD SSDCVMNRWTAS+DAD  RFQSISVMCEQRLR+   + E                               +LVLKE                                                                 KHEGTLLNNLTSARNSMRS+LGKDSLLITRFIF +WK V+E+++ LRRRFQR                                                                                     VQ + +GS  EN V+MAS TKMA+AAK+AE RIRLD+GDD+SIE E +   HSTTGTQTD V FD  SG          +SS +K EAL   TS
Sbjct:    7 DSSSVQTYNFTGIDNTHGSINSKSSLRR-KRKHDWRPANRLPTSHGVSPSFPGRLKAASP--WSERDMSSDCVMNRWTASFDADRARFQSISVMCEQRLRKIASLQE-------------------------------SLVLKE-----------------------------------------------------------------KHEGTLLNNLTSARNSMRSLLGKDSLLITRFIFRSWKAVMEDTSALRRRFQR-------------------------------------------------------------------------------------VQDHRNGS-RENRVLMASVTKMALAAKVAENRIRLDIGDDLSIEDEDMGVGHSTTGTQTDPVSFDNPSGGRVPGGDSHTASSGSKEEALTPKTS 261
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1359.2897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQU2_ECTSI9.070e-6038.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1359contigH-canaliculatus_F_contig1359:14898..22253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons13
Model size1719
Cds size1719
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929101.751659-CDS-H-canaliculatus_F_contig1359:14897..149871622929101.751659-CDS-H-canaliculatus_F_contig1359:14897..14987Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1359 14898..14987 +
1696845679.2554674-CDS-H-canaliculatus_F_contig1359:14897..149871696845679.2554674-CDS-H-canaliculatus_F_contig1359:14897..14987Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1359 14898..14987 +
1622929101.7681725-CDS-H-canaliculatus_F_contig1359:15700..158851622929101.7681725-CDS-H-canaliculatus_F_contig1359:15700..15885Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1359 15701..15885 +
1696845679.2676306-CDS-H-canaliculatus_F_contig1359:15700..158851696845679.2676306-CDS-H-canaliculatus_F_contig1359:15700..15885Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1359 15701..15885 +
1622929101.7853742-CDS-H-canaliculatus_F_contig1359:15996..161431622929101.7853742-CDS-H-canaliculatus_F_contig1359:15996..16143Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1359 15997..16143 +
1696845679.2855914-CDS-H-canaliculatus_F_contig1359:15996..161431696845679.2855914-CDS-H-canaliculatus_F_contig1359:15996..16143Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1359 15997..16143 +
1622929101.8055718-CDS-H-canaliculatus_F_contig1359:16647..167231622929101.8055718-CDS-H-canaliculatus_F_contig1359:16647..16723Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1359 16648..16723 +
1696845679.2946074-CDS-H-canaliculatus_F_contig1359:16647..167231696845679.2946074-CDS-H-canaliculatus_F_contig1359:16647..16723Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1359 16648..16723 +
1622929101.8207948-CDS-H-canaliculatus_F_contig1359:16996..171461622929101.8207948-CDS-H-canaliculatus_F_contig1359:16996..17146Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1359 16997..17146 +
1696845679.3057597-CDS-H-canaliculatus_F_contig1359:16996..171461696845679.3057597-CDS-H-canaliculatus_F_contig1359:16996..17146Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1359 16997..17146 +
1622929101.8360803-CDS-H-canaliculatus_F_contig1359:17387..175251622929101.8360803-CDS-H-canaliculatus_F_contig1359:17387..17525Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1359 17388..17525 +
1696845679.320909-CDS-H-canaliculatus_F_contig1359:17387..175251696845679.320909-CDS-H-canaliculatus_F_contig1359:17387..17525Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1359 17388..17525 +
1622929101.8491979-CDS-H-canaliculatus_F_contig1359:17975..181001622929101.8491979-CDS-H-canaliculatus_F_contig1359:17975..18100Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1359 17976..18100 +
1696845679.3309515-CDS-H-canaliculatus_F_contig1359:17975..181001696845679.3309515-CDS-H-canaliculatus_F_contig1359:17975..18100Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1359 17976..18100 +
1622929101.8672228-CDS-H-canaliculatus_F_contig1359:18518..185851622929101.8672228-CDS-H-canaliculatus_F_contig1359:18518..18585Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1359 18519..18585 +
1696845679.3403134-CDS-H-canaliculatus_F_contig1359:18518..185851696845679.3403134-CDS-H-canaliculatus_F_contig1359:18518..18585Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1359 18519..18585 +
1622929101.8879535-CDS-H-canaliculatus_F_contig1359:18732..189871622929101.8879535-CDS-H-canaliculatus_F_contig1359:18732..18987Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1359 18733..18987 +
1696845679.3536966-CDS-H-canaliculatus_F_contig1359:18732..189871696845679.3536966-CDS-H-canaliculatus_F_contig1359:18732..18987Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1359 18733..18987 +
1622929101.9188755-CDS-H-canaliculatus_F_contig1359:19306..194491622929101.9188755-CDS-H-canaliculatus_F_contig1359:19306..19449Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1359 19307..19449 +
1696845679.3620827-CDS-H-canaliculatus_F_contig1359:19306..194491696845679.3620827-CDS-H-canaliculatus_F_contig1359:19306..19449Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1359 19307..19449 +
1622929101.9345272-CDS-H-canaliculatus_F_contig1359:20209..202991622929101.9345272-CDS-H-canaliculatus_F_contig1359:20209..20299Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1359 20210..20299 +
1696845679.3703985-CDS-H-canaliculatus_F_contig1359:20209..202991696845679.3703985-CDS-H-canaliculatus_F_contig1359:20209..20299Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1359 20210..20299 +
1622929101.9477417-CDS-H-canaliculatus_F_contig1359:21678..218561622929101.9477417-CDS-H-canaliculatus_F_contig1359:21678..21856Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1359 21679..21856 +
1696845679.378512-CDS-H-canaliculatus_F_contig1359:21678..218561696845679.378512-CDS-H-canaliculatus_F_contig1359:21678..21856Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1359 21679..21856 +
1622929101.9649613-CDS-H-canaliculatus_F_contig1359:22178..222531622929101.9649613-CDS-H-canaliculatus_F_contig1359:22178..22253Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1359 22179..22253 +
1696845679.3953757-CDS-H-canaliculatus_F_contig1359:22178..222531696845679.3953757-CDS-H-canaliculatus_F_contig1359:22178..22253Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1359 22179..22253 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1359.2897.1prot_H-canaliculatus_F_contig1359.2897.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1359 14898..22253 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1359.2897.1

>prot_H-canaliculatus_F_contig1359.2897.1 ID=prot_H-canaliculatus_F_contig1359.2897.1|Name=mRNA_H-canaliculatus_F_contig1359.2897.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=573bp
KVLPELDGTSQANDPASTKMGLVDASVFSQVTGTASARSSSVRYASHTEE
RAAMPFTPSYPGGQCDAPSIHTYNFTGINKKRGSITSKSGVRRQKRRYDW
RPVNYLPTSHGRFSSSPGIRRPALPSERSWRDTSSDCVMNRWTASYDADC
TRFQSISVMCEQRLRRACVMTEHAPMPDEFRTMAACEALGTMLPVFERYD
SLVTLVLKELLRSVYEDSDLLIGQFFAWLHPGSSDQPIRTPAEVMLLKSK
PHFVRCRELQSQIDELKGALEQKEKHEGTLLNNLTSARNSMRSVLGKDSL
LITRFIFANWKCVVENSTTLRRRFQRARLRIWFNGLRTRLTRRMNQEAKY
QLGLRERELMLHASVKEDEARNDGQPASESVAEKSQITRAASTCELIVAS
LLEQAHAFMAEVQSYGSGSAEENGVIMASATKMAVAAKLAEERIRLDVGD
DISIEAEAIHSTTGTQTDSVYFDGRSGPENSSSRNKAEALAYSTSSKFWH
GDPFHEFPPELQECPLCSSFMDRSIRNLSKLSRYALQAIIIPDFYTRKVM
ADASDDLRGGRRLEPREAIEAS*
back to top

mRNA from alignment at H-canaliculatus_F_contig1359:14898..22253+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1359.2897.1 ID=mRNA_H-canaliculatus_F_contig1359.2897.1|Name=mRNA_H-canaliculatus_F_contig1359.2897.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=7356bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1359:14898..22253+ (Hapterophycus canaliculatus Oshoro5f female)
AAGGTGTTGCCAGAGCTCGACGGGACCTCGCAGGCGAACGATCCAGCCTC
CACCAAGATGGGATTGGTGGATGCATCAGTCTTTTCCCAGGTATATGTTT
TCAGTCGTTCCTAGTGGTCGAGCATAGACGAGTACTATACAGGTTCTTGT
ACCGGGTCTGGGAAAGACCGATGGTGCGTGTTCTTGTACGACTGAGGCAG
GCTGCTGCTCTTCTTGCTGTGGTCTCGCGAGCGCCTTGAGTTTGACGCGT
CTCTGCCTGACATTGTCCAGAAAGCGCAGTTGTCCAGACTGCTTCTTTCT
TGTTGATCCAAAGAGCTCGAGGTTGTTGGGTAAGCGCTTGATGTGCGTCA
GACCATTATTTCATTTGAAAACCAAGAAGGTCTTGGTAAGTGGGGCTCCA
AGCGCGAAATTCAAAAAATAATTTGGCAAGGAGCAGCACCGCAAATATTT
GCTTGCAATACAAGTTGAAGAGAACGGCGGCAGAGGAAGGGCGGAGGAGC
CCGAGAGACAGATATGTTTAGCCTCCATCCGTCCGCCCAAACGCCTACCC
GAAGTAGGTACGTATTGAGAGTGGGAGAAGCTAACAACTAAAATGGAGTT
GGTAGCCAGGATGGCACGGTCGATGTAGACCACAAAAGACGCCGACATGA
AAACGATGGACTTTCGGTACATTCAGTGGAAGCTTGCCCATTCAAGGATC
AAGCTTCTTGGACGTCGACGAACTAGCACGCTACAGAGGTCGCTATATTC
TGGTTCTACCGGCTTGCTGTATCTCAGCGGATCCATGCGGGTGCGGTCAT
CAGGTGACGGGTACGGCCAGCGCTCGAAGCAGCAGTGTCCGCTATGCGTC
ACATACTGAGGAAAGGGCTGCGATGCCATTCACCCCGAGCTACCCCGGCG
GGCAGTGCGATGCCCCTTCGATTCACACTTATAATTTCACCGGAATTAAC
AAGAAGCGCGGGAGCATCACTTCCAAATCCGGCGTGCGGTAAGACACACT
ATGTTGTACTCAAATATGACAGTAATATGATACGAGATTAACAAACGAGT
GGAACCCTTCCAAGTGCAACATGGAGATTCTACCGGCGACCCTTTGAAGC
AGGCAGAAGAGGAGGTACGACTGGCGACCTGTCAACTACCTTCCAACTTC
GCACGGCAGATTCTCGTCTTCGCCTGGTATACGCCGACCAGCCTTGCCGT
CGGAGCGTTCTTGGCGCGACACAAGCTCGGACTGCGTGATGAATAGGTGC
ACCTAGAGGCTTTTTGGCCGAGTCCACATCAGCCAGTCGTGGCATCACAC
TTTGTAATGAAATGCTTGAAGACTCATGCGTTGGATGGCCTGTGAGCTTC
GAGAGGAAGGGGTGCGCCAACAGATTCCGACATATGGGCAGGGACACAGA
GGAAAATATTGCCAAAATATTTGCGTTACCTTCTAGTGTTCTGATTGCCG
CAATTGTCGCGAGCAAATCAATCCAGACAAAAATGAAGGCAAGTACCGCA
GGACGTATTCTCATGTGTGACCCCGGCTGGTATGTCTATCGTGAGTTGTA
GAGAGATTGTACACCGCAACGTATATGTGAACCTACACCGATGTATGATT
GCACTGGAAGAGGAGAAGGCAGATTAAGCCAGAATACATGGGATGAAGAA
AAACAAAATCCAGGGCGAAAATCATCAAAGTATCGAAACCCTTTGCAACC
AAATGATAGACACGGCGGCTGTCTAAGCATTCCAATGACAATCACCGCAG
GTGGACTGCGAGCTACGACGCGGACTGTACTCGATTCCAGTCTATTTCAG
TGATGTGCGAGCAACGACTTCGAAGGGTAGGTTCACAAGAGCGGGGAGCA
CCTTGTCTAGTAACCGGAGAAGCTGGTCGCCGAACCGTAGAAGATGATTT
GCCACGGTACTCTTTTCGCTGGTTCGCACGTTGAAGTGTGTGCGTGCCTC
CTTTGAACTGCAGAGATGCTATGTGCCGTAGCGTCGTGATGAACGCCGTC
TTCCTTCCACGTGGTGAGCAACGGCTGAGGGTTCTTGGCCCTGTCCATTC
GAGTGTAGCCAAACGAAGCTTTTGAACTGTCCTTAACGACCCAGTGCAGG
CATGCGTGATGACGGAGCACGCACCCATGCCGGATGAGTTCAGGACGATG
GCAGCGTGTGAAGCTCTTGGAACTATGCTCCCTGTATTCGAACGATACGA
CTCCCTCGTGACGCTCGTACTGAAGGAACTCCTGCGCTCAGTTTATGAGG
TATTCTCGGAGTTGATAGAACGGTATCCATCGGCGACCGGTCCCTCTCTT
AGTCCGCGATTAACGTGCTATGATCTAGCCAAATCTATCGGAAAGTTACT
TCAAGCTGTTGTCACGATTTATCCGGACAAACTCGAACTCATTTGCACTC
TAGAAACCATCGGACCCATTTCCATCTGATTTTCGATCGAGGCTTAACCC
CTGAACGGCACATAACAAATAAGTCACATGTGTTTTGCAGGATTCAGACT
TGCTGATCGGCCAGTTCTTTGCGTGGCTCCACCCGGGCTCTTCGGATCAA
CCCATCCGGACTCCAGCAGAGGTCATGCTCCTAAAAAGCAAACCTCATTT
CGTTCGGTGTCGAGAACTTCAATCGCAAGTGAGCGACCCACTCTGATTCT
GTAATATCCTGTAAGAACTGCCCGGTCCGTGACAGCCCCTTTCCCCTCCC
TCAAATATGGCATCTCAACTGCTTTGAAAAGCCCCGGGCTGATGAGTTTT
AAGATCTTCCCAAACGAGCCTCTTAGCTTCGAGAACGCCCCGGAATGATC
GTTTCATTCTCAAATATTTTGGCCCCAGACGGGGGATTACCAAGGATATC
ATAGTTGTGGTTCACGATTTTTCACTATACGCTTGCGCCTGCATTTGAGG
AGTTCAGAAAAGAAGGTTACTAAGGAGAACTCTGCTTGAGATAAAATCTT
GTGGAGCGAAGCCCCGCCCTGCACAATTTAAGAAGGGATACGCATGTACA
ATATCTTTACTTATCGAAACATACAACCTCACTCCCGCCAACGCTCGAAC
GCTCGGATATCTTCTGGTTATGGGATAGATTGACGAGTTGAAAGGCGCGC
TGGAGCAGAAAGAGAAGCACGAAGGAACCTTGCTCAACAACCTCACAAGT
GCTAGAAATTCCATGAGATCCGTACTCGGCAAGGACTCCTTACTCATCAC
GAGGTAAGCAATGAAGTTGACAAACAAGGAGGAAGCGAAAAATCTCTCGA
TTCTTTGAGAGGAAGGGCTCTCAAAAGTTGACAAACATCGAGGACGTGAA
AATCTCTCGATGCTTTGAGAAGAAGGGCTATCAAAATGTATGTTGATTTG
GAGTTTTTCGTGATGATGTTCAGTTATTTCGCGCCAATCTTTATTTACTC
CCTGACATAATGCGGTTGTTGCGAAAAAACGCTACGAGTATGTTTTCTTC
TTCGCTAGTCCAGGCTTACCTGCATAGGCATATCCAACGTAAAACTCGAA
CGCAGTGTACTACATCGCAGGCTCAATGAGGTCCCGTCGGTGCAAACGCC
ACCGAGGCAAGTTGACATAATGGAAAATGGCTGTCGTTAACTATTATCTA
CAAGGACCTTCTCACCTGCAGGTTCATATTCGCCAACTGGAAATGCGTGG
TGGAAAATAGCACCACGCTACGGAGGCGATTCCAACGAGTGAGTGCACTC
AGGCTCTCTACCTACTGGCGTGTAAATATCATTGCCGTTGAATATTGTCT
TATGAATCCGATCATCGTTGTGGCTCAAGATTACCTAATCCGACAGCGCT
ATGCCGACTGTGTCATACGTTCTGACGAGTGGCAGGCTCGACTCCGTATT
TGGTTCAACGGCTTGCGCACGCGCCTGACGAGGAGGATGAATCAGGAGGC
AAAGTATCAGCTAGGCCTGCGGGAACGTGAACTGATGCTCCACGCCTCGG
TAAAGGAAGACGAAGCGCGGAACGATGGACAGCCTGCTTCGGAATCAGTA
GCAGAGAAGTCACAGATCACGCGAGCTGCCAGCACGTGCGAGTTGATTGT
CGCGTCCTTGCTGGAGCAAGCCCACGCTTTCATGGCTGAGGTGACAGACG
TCAGTCATACGTTGCGTGCTGCAGCAACGGATGAGGGTCTAGATCGTACA
GTTTTGGGCTTAATGCAACGAGTCATTTTTCTGTTCTCGCAGGAGACTGT
GTGATGAGCAGGTTAGAGGATATAGTCCGATCCATTTTTACGGGACAATG
TTGGATGAATAACACTCCATCGTCTTCCCATATTTCACTATCGAAATTCA
GTACGTGGAACGTCGAAGGTAGCATTCGCTAGAAAAAGTACATGAGCACA
CTGAGCGTACTGGCAATTAATTTCTTGACAGAGTCGCCAGCCTGGTATGC
CCCTCTCAGGTGCAATCGTACGGAAGCGGCTCGGCAGAAGAGAATGGAGT
GATTATGGCATCGGCAACCAAAATGGCTGTGGCTGCCAAGCTAGCAGAGG
AACGGATTCGGTTGGACGTCGGCGATGACATATCCATCGAAGCAGAGGCA
ATGTTCAGAATGATTCGCATAATTGAGTGTGAGCCAACCCGTCAAACGTA
AGCGGTTATTGGTTGTTGTTATTGTCTTCGCGCTTAAATTCCATCGCAGG
AGACATTATTCCGTGGTCACAAGTTACCCACGGAAAAAACAAAGTGTACC
CTCTTTCGTGTGAAAGGGAGAGGAAAATTCACACAGACATCTCGCACACA
ACAATCCCCTCGTATCGCTCTGCGGACTCGCTGACAGTGGTGAAAAGCCC
AGTGCTTGTCTTTTTTTCACAGATAGATTCAACCCTCCTACTCCCTTCGA
TTCTTTTCCTTTGTCGCTAGTTCTGTGCGCACCCACGTTATGTGCGGCTC
CTCCACTCCTGTCTTCAGTTTTCCGCCATGCGCTCTCCGCTACTGTTTCT
CCCCGGTTTCCATTCCGGGGCATTGTGATTTAGGCCCATGTTTCAGCTGA
CAGAGTCAGATCCGCGTGAAATACCCCGATCTCGCAATCGCGTTACCCCT
CGCCGTCCAACTCAGGGTTCCCATTTCCCATAAGGCCAGGGCTCGTGTAT
TTGCTGTAGTTGGGTGTCCTTTGGTGGTAAGTCCACAAGTAGACCCCAGC
CCGCCCCGGCAGGGGGGCAAGCCAGGGGGGAAGAGATTACTCATTGAAAT
GGACGTAAAATTTGCAACAGACGTTTCGTTCACAGACCAATGGCGATATA
CTCACCAAGGTTTCCATCTGTCCAATTATCGATTCTACTGTTTGTCAGGA
TGTTGGCATTAGCCACTCAACGACAGGTACCCAGACAGACTCAGTATACT
TCGACGGCCGGTCTGGACCAGAAAATAGCTCTTCACGGAACAAGGCGGAA
GCGTCGGTGGCGAATCCCTGGTGAGATGCGAGTATCGCCATTAATGTTTT
GGGATGATTCGCAGGTAGCAACCTCAAGGGTGCCACGCTACCTGATGCAA
AGGCTCTCCTGCTGTGTTCCCGAAATGACGAGTGGAATCTGACTGATGCA
AGAATAATTCTTCGATTCCCAGCGATATTTCGTTCATAACAGAATGCGCA
TAGAAACAGATGGACGCACACGTTATATAACCCACAGCCCGCATTTTGGA
TGGGACCGTTGGTCGACATGTGTGTCGTGCCGACTGTGTTCAAATATAAC
GCCAGATGAACGAACACGACTTTCCCTCTTCGTGTCGCACACGACTGCGA
CAGTGAGCTGACCAACAACAGGGAAAGTGGAGATCTGAGGCAGGTCCAGA
ATACTACAGAGGAAGGCCGGTTTGAATTCAAGGTCAGTCCAGGGTCCTGA
CGGTGTACAGAAAACGTGTACAAATTATGTTGACTTTTGTTTTCGCCATC
GAGCCTTGGTATATGCTGCTCCACTTGCTTCCAAATTTTTATTGTGGACT
TTCAAAGCGTCCCCTTTTCGCGGATGGATCGATTCCAGGATTCGGTCGTT
GGCCTTGGACTGCGGACTTTGGTCGTGGCAGATTTGGCTTGTACCAGAAA
AAATGATAGCGGTGAGAACACAAGCGGTAGCAGCAGCAGCACGAAGCACA
ATTATGATGCCGACCCTCGAATATATTGGTGGTTGTTCGTGGCCGTGGGC
AGGCTGAAGTGGAAAGCGACGCTGGTTCTGCGAAGGACGGTGGGGCACAA
TTGAAGGCGAAAGGGTAAGGGAAGAAAATGTTTTGGCCAACACTGTTGCT
GTTCCCTGGCACAACAAACGCGCTTCTGCACAGATACAACGCAACTCAAT
GTGCCACAGGCTCACGCTAGTGGATGCAGCTTTCAACGACAAAGCACACC
ATAGATGTCTACGCAGAAACAGGCCAGGGGGAATACAAATAACAAAGCAA
CCGCCCGTGGGACCCTCTCGGTACGAAAATTCTTTGCCAGCTGAAAAGAC
AAGAATACATTGTCCGTCGAGTATGTGAAAACACTCCCGCCCTTTGTGCG
GCTTTTGGCGTGCCCGGGTCAACAGAAAAAAGACGAAAAATTGCGGCAAC
CGGGTTGGAACCGGTTGTCATTGAACTTTGGTGTTTCAAAGAGAAATACC
GGGTAGTCAACAGCACCGAAGGAATACCTTCCGAGCCACGTCTCAGCAAG
CGTCTCGGGAGATTTGAATCCTTAGGAGAGATTGCCAGACGAGCTAGAGA
CGTAGAACTTCACTGCAGGCGTTTGAACGAGCTTGATCGGCTATCCTGAA
CTCTACTGCGAAGGCCTACATTTTGCTGAAGGCTTGCCTACTCTACTTCT
TCAAAATTCTGGCACGGCGATCCTTTTCACGAATTTCCTCCGGAGTTACA
AGAATGCCCCCTTTGTTCGTCCTTCATGGACAGGTCTATACGCAATCTCT
CGAAGCTGAGCCGGTATGCACTGCAAGCCATCATTATCCCAGACTTTTAC
ACCAGAAAGGTCAGCCATGCGACAGTCCTTTGTCGCCATTCTCTGTGTAC
GTGTCATCTGTTATTCTCCGTCGGTTAAAAGTGGAAAGCTGCGAATGATC
GATGCTTGGGGCGAACTCTACATCAGGTGGCTTAAGAACACTGTTTTCCA
CACAGGAGGGTTTTGCCGCAGACATCGATGAATTCCACCTAAGGCAAACC
TCTCCATCAATAGTCTTCGGTTGCTTCATGACCGCGTGTCTAGCAATAGT
TGAATCTACCGGGCACTGGCTTTCTCTCGTGGATCATGTGCTTTTCATCT
ACGCTTAATCTGCATACCTTGTGTGAGGCAGGTGATGGCTGACGCAAGCG
ACGACCTCAGAGGAGGGAGACGGCTGGAGCCAAGGGAAGCAATCGAGGCA
AGTTGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1359:14898..22253+

>mRNA_H-canaliculatus_F_contig1359.2897.1 ID=mRNA_H-canaliculatus_F_contig1359.2897.1|Name=mRNA_H-canaliculatus_F_contig1359.2897.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3438bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1359:14898..22253+ (Hapterophycus canaliculatus Oshoro5f female)
AAGGTGTTGCCAGAGCTCGACGGGACCTCGCAGGCGAACGATCCAGCCTC
CACCAAGATGGGATTGGTGGATGCATCAGTCTTTTCCCAGAAGGTGTTGC
CAGAGCTCGACGGGACCTCGCAGGCGAACGATCCAGCCTCCACCAAGATG
GGATTGGTGGATGCATCAGTCTTTTCCCAGGTGACGGGTACGGCCAGCGC
TCGAAGCAGCAGTGTCCGCTATGCGTCACATACTGAGGAAAGGGCTGCGA
TGCCATTCACCCCGAGCTACCCCGGCGGGCAGTGCGATGCCCCTTCGATT
CACACTTATAATTTCACCGGAATTAACAAGAAGCGCGGGAGCATCACTTC
CAAATCCGGCGTGCGGTGACGGGTACGGCCAGCGCTCGAAGCAGCAGTGT
CCGCTATGCGTCACATACTGAGGAAAGGGCTGCGATGCCATTCACCCCGA
GCTACCCCGGCGGGCAGTGCGATGCCCCTTCGATTCACACTTATAATTTC
ACCGGAATTAACAAGAAGCGCGGGAGCATCACTTCCAAATCCGGCGTGCG
CAGGCAGAAGAGGAGGTACGACTGGCGACCTGTCAACTACCTTCCAACTT
CGCACGGCAGATTCTCGTCTTCGCCTGGTATACGCCGACCAGCCTTGCCG
TCGGAGCGTTCTTGGCGCGACACAAGCTCGGACTGCGTGATGAATAGCAG
GCAGAAGAGGAGGTACGACTGGCGACCTGTCAACTACCTTCCAACTTCGC
ACGGCAGATTCTCGTCTTCGCCTGGTATACGCCGACCAGCCTTGCCGTCG
GAGCGTTCTTGGCGCGACACAAGCTCGGACTGCGTGATGAATAGGTGGAC
TGCGAGCTACGACGCGGACTGTACTCGATTCCAGTCTATTTCAGTGATGT
GCGAGCAACGACTTCGAAGGGTGGACTGCGAGCTACGACGCGGACTGTAC
TCGATTCCAGTCTATTTCAGTGATGTGCGAGCAACGACTTCGAAGGGCAT
GCGTGATGACGGAGCACGCACCCATGCCGGATGAGTTCAGGACGATGGCA
GCGTGTGAAGCTCTTGGAACTATGCTCCCTGTATTCGAACGATACGACTC
CCTCGTGACGCTCGTACTGAAGGAACTCCTGCGCTCAGTTTATGAGGCAT
GCGTGATGACGGAGCACGCACCCATGCCGGATGAGTTCAGGACGATGGCA
GCGTGTGAAGCTCTTGGAACTATGCTCCCTGTATTCGAACGATACGACTC
CCTCGTGACGCTCGTACTGAAGGAACTCCTGCGCTCAGTTTATGAGGATT
CAGACTTGCTGATCGGCCAGTTCTTTGCGTGGCTCCACCCGGGCTCTTCG
GATCAACCCATCCGGACTCCAGCAGAGGTCATGCTCCTAAAAAGCAAACC
TCATTTCGTTCGGTGTCGAGAACTTCAATCGCAAGATTCAGACTTGCTGA
TCGGCCAGTTCTTTGCGTGGCTCCACCCGGGCTCTTCGGATCAACCCATC
CGGACTCCAGCAGAGGTCATGCTCCTAAAAAGCAAACCTCATTTCGTTCG
GTGTCGAGAACTTCAATCGCAAATTGACGAGTTGAAAGGCGCGCTGGAGC
AGAAAGAGAAGCACGAAGGAACCTTGCTCAACAACCTCACAAGTGCTAGA
AATTCCATGAGATCCGTACTCGGCAAGGACTCCTTACTCATCACGAGATT
GACGAGTTGAAAGGCGCGCTGGAGCAGAAAGAGAAGCACGAAGGAACCTT
GCTCAACAACCTCACAAGTGCTAGAAATTCCATGAGATCCGTACTCGGCA
AGGACTCCTTACTCATCACGAGGTTCATATTCGCCAACTGGAAATGCGTG
GTGGAAAATAGCACCACGCTACGGAGGCGATTCCAACGAGTTCATATTCG
CCAACTGGAAATGCGTGGTGGAAAATAGCACCACGCTACGGAGGCGATTC
CAACGAGCTCGACTCCGTATTTGGTTCAACGGCTTGCGCACGCGCCTGAC
GAGGAGGATGAATCAGGAGGCAAAGTATCAGCTAGGCCTGCGGGAACGTG
AACTGATGCTCCACGCCTCGGTAAAGGAAGACGAAGCGCGGAACGATGGA
CAGCCTGCTTCGGAATCAGTAGCAGAGAAGTCACAGATCACGCGAGCTGC
CAGCACGTGCGAGTTGATTGTCGCGTCCTTGCTGGAGCAAGCCCACGCTT
TCATGGCTGAGGCTCGACTCCGTATTTGGTTCAACGGCTTGCGCACGCGC
CTGACGAGGAGGATGAATCAGGAGGCAAAGTATCAGCTAGGCCTGCGGGA
ACGTGAACTGATGCTCCACGCCTCGGTAAAGGAAGACGAAGCGCGGAACG
ATGGACAGCCTGCTTCGGAATCAGTAGCAGAGAAGTCACAGATCACGCGA
GCTGCCAGCACGTGCGAGTTGATTGTCGCGTCCTTGCTGGAGCAAGCCCA
CGCTTTCATGGCTGAGGTGCAATCGTACGGAAGCGGCTCGGCAGAAGAGA
ATGGAGTGATTATGGCATCGGCAACCAAAATGGCTGTGGCTGCCAAGCTA
GCAGAGGAACGGATTCGGTTGGACGTCGGCGATGACATATCCATCGAAGC
AGAGGCAATGTGCAATCGTACGGAAGCGGCTCGGCAGAAGAGAATGGAGT
GATTATGGCATCGGCAACCAAAATGGCTGTGGCTGCCAAGCTAGCAGAGG
AACGGATTCGGTTGGACGTCGGCGATGACATATCCATCGAAGCAGAGGCA
ATCCACTCAACGACAGGTACCCAGACAGACTCAGTATACTTCGACGGCCG
GTCTGGACCAGAAAATAGCTCTTCACGGAACAAGGCGGAAGCCCACTCAA
CGACAGGTACCCAGACAGACTCAGTATACTTCGACGGCCGGTCTGGACCA
GAAAATAGCTCTTCACGGAACAAGGCGGAAGCGCTTGCCTACTCTACTTC
TTCAAAATTCTGGCACGGCGATCCTTTTCACGAATTTCCTCCGGAGTTAC
AAGAATGCCCCCTTTGTTCGTCCTTCATGGACAGGTCTATACGCAATCTC
TCGAAGCTGAGCCGGTATGCACTGCAAGCCATCATTATCCCAGACTTTTA
CACCAGAAAGGCTTGCCTACTCTACTTCTTCAAAATTCTGGCACGGCGAT
CCTTTTCACGAATTTCCTCCGGAGTTACAAGAATGCCCCCTTTGTTCGTC
CTTCATGGACAGGTCTATACGCAATCTCTCGAAGCTGAGCCGGTATGCAC
TGCAAGCCATCATTATCCCAGACTTTTACACCAGAAAGGTGATGGCTGAC
GCAAGCGACGACCTCAGAGGAGGGAGACGGCTGGAGCCAAGGGAAGCAAT
CGAGGCAAGTTGAGTGATGGCTGACGCAAGCGACGACCTCAGAGGAGGGA
GACGGCTGGAGCCAAGGGAAGCAATCGAGGCAAGTTGA
back to top